Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Coccomyxa_20sp._20LA000219_20[genbank_20GCA_5F000812005.1_202015-01- 02] 106 sequences; 48,546,496 total letters Query= NC_006882.2 Length=45176 Score E Sequences producing significant alignments: (Bits) Value seq18 580 3e-161 >seq18 Length=145863 Score = 580 bits (642), Expect = 3e-161 Identities = 729/991 (74%), Gaps = 10/991 (1%) Strand=Plus/Minus Query 19290 TTTTGTGAGTGGGTCACAAGTACCGAGAACCGCCTTTATGTAGGTTGGTTTGGAGTACTT 19349 || ||||| ||||| || || || || ||||||||||| | ||||||||||| || || Sbjct 120631 TTCTGTGAATGGGTTACTAGCACTGAAAACCGCCTTTACATTGGTTGGTTTGGTGTTCTA 120572 Query 19350 ATGATTCCTTGCTTACTAGCTGCTACTACTTGCTTTATACTCGCCTTTATCGCAGCACCG 19409 ||||| ||| | || |||| ||| || || || |||| ||| | || ||||| Sbjct 120571 ATGATCCCTACTCTTTTAACTGCAACTTCTGTGTTCATTATCGCATTTGTTGCTGCACCT 120512 Query 19410 CCTGTAGATATAGATGGCATACGTGAGCCAGTTTCCGGCTCGTTAATGTACGGAAACAAT 19469 |||||||| || ||||| || |||||||| || || || || || | ||||| ||||| Sbjct 120511 CCTGTAGACATCGATGGTATCCGTGAGCCTGTATCAGGTTCTCTACTTTACGGTAACAAC 120452 Query 19470 ATTATTTCTGGAGCAGTAGTTCCAAGCTCCAATGCAATAGGACTGCACTTTTATCCGATC 19529 || |||||||| || || ||||| | || || ||||| || |||||||| || || || Sbjct 120451 ATCATTTCTGGTGCTGTTGTTCCTACATCAAACGCAATTGGTCTGCACTTCTACCCAATT 120392 Query 19530 TGGGAAGCCGG--CACTTTAGATGAGTGGTTATACAACGGCGGTCCATATCAACTTGTTG 19587 |||||||| | ||||| || || ||| | |||||||| ||||| || ||||| | | Sbjct 120391 TGGGAAGCTGCTTCACTT--GACGAATGGCTTTACAACGGTGGTCCTTACCAACTAATCG 120334 Query 19588 TCTTCCACTTCTTAATAGG-AGTAGCAGCATACGCTGGTAGACAGTGGGAACTATCTTAC 19646 | | |||||||| |||| | | || || ||| ||| | |||||||||| |||| | Sbjct 120333 TATGTCACTTCTTCCTAGGCATTTGCTGC-TACATGGGTCGTGAGTGGGAACTTTCTTTC 120275 Query 19647 AGATTAGGAATGAGACCATGGATATTCGTAGCATATACAGCACCACTATCAGCAGCTCTT 19706 | ||||||||| | |||||||| ||||| || | |||||| | |||| ||| | Sbjct 120274 CGTTTAGGAATGCGTCCATGGATCGCTGTAGCTTACTCTGCACCAGTTGCAGCTGCTACT 120215 Query 19707 GCTGTGTTTCTCGTTTACCCATTTGGGCAAGGGAGTTTTAGTGATGGTATGCCTCTTGGT 19766 ||||| || || | ||||| | || ||||| || |||||||||||| | ||| Sbjct 120214 GCTGTATTCATCATCTACCCTATCGGTCAAGGTTCATTCTCAGATGGTATGCCTTTGGGT 120155 Query 19767 ATCTCTGGTACTTTTAACTTTATGTTCGTATTCCAAGCAGAACACAATATCCTTATGCAT 19826 || || || ||||| ||||| ||| | || |||||||| || ||||| ||||||||||| Sbjct 120154 ATTTCAGGAACTTTCAACTTCATGATTGTTTTCCAAGCTGAGCACAACATCCTTATGCAC 120095 Query 19827 CCGTTCCACATGCTCGGTGTTGCTGGCGTATTCGGTGGATCTCTTTTCTCTGCTATGCAC 19886 || ||||||||||| ||||||||||| || |||||||| || |||||||| ||||||||| Sbjct 120094 CCATTCCACATGCTTGGTGTTGCTGGTGTGTTCGGTGGTTCACTTTTCTCAGCTATGCAC 120035 Query 19887 GGAAGTTTGGTTACTTCCTCGATCATCAAGGAAACAACTGAGGATGTATC-GCAGAACTA 19945 || | | || ||||| || | ||| ||||| |||||| | | ||| ||| ||| Sbjct 120034 GGTTCTCTAGTAACTTCTTCACTTATCCGTGAAACTACTGAGAACGAATCAGCA-AACGC 119976 Query 19946 TGGCTATAAGTTCGGGCAAGATGAAGAGACATATAATATTGTCGCTGCACACGGGTACTT 20005 ||| || || ||||| ||||| ||||| || || || ||||| ||||||||||| ||||| Sbjct 119975 TGGTTACAAATTCGGTCAAGAAGAAGAAACTTACAACATTGTTGCTGCACACGGTTACTT 119916 Query 20006 TGGGAGATTGATATTTCAATATGCTTCTTTCAATAATTCTCGTTCTTTACATTTCTTTCT 20065 ||| | | || || ||||| ||||| ||||| || |||||||| | || ||||| || Sbjct 119915 TGGTCGTCTAATCTTCCAATACGCTTCATTCAACAACTCTCGTTCACTTCACTTCTTCCT 119856 Query 20066 TGCTACTTTCCCCGTGGTTGGCATATGGCTTACCTCCATGGGAATCTGCACTATGGCTTT 20125 |||| ||| || || ||||| || ||| |||| | | || |||| |||||||| || Sbjct 119855 TGCTGCTTGGCCTGTAGTTGGTATCTGGTTTACTGCTCTTGGTATCTCTACTATGGCATT 119796 Query 20126 CAACCTTAATGGTTTTAACTTTAACCAGTCAGTAGTTGA-TGTCAACGGAAAGATAATCC 20184 ||||||||| || || ||||| ||||||||||| || || | |||| || | ||| Sbjct 119795 CAACCTTAACGGATTCAACTTCAACCAGTCAGTTGTAGACTCTCAA-GGTCGCGTTATCA 119737 Query 20185 CAACATGGGCTGATGTATTAAATAGAGCTAACCTCGGATTTGAAGTTATGCACGAGCGCA 20244 || |||| ||| | | || | || ||||| || | ||||| |||||||| | | Sbjct 119736 ACACTTGGGGTGACATCATCAACCGTGCCAACCTTGGTATGGAAGTAATGCACGAAAGAA 119677 Query 20245 ATGCTCATAACTTCCCACTTGATTTAGCTTC 20275 | || || ||||||||||| || | ||||| Sbjct 119676 ACGCACACAACTTCCCACTAGACCTTGCTTC 119646 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 144441418184136