Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Coccomyxa_20sp._20LA000219_20[genbank_20GCA_5F000812005.1_202015-01- 02] 106 sequences; 48,546,496 total letters Query= NC_006883.2 Length=252401 Score E Sequences producing significant alignments: (Bits) Value seq18 758 0.0 >seq18 Length=145863 Score = 758 bits (840), Expect = 0.0 Identities = 738/947 (78%), Gaps = 2/947 (0%) Strand=Plus/Minus Query 211610 TTGGTTGGTTTGGTGTTCTTATGATCCCATGTCTTCTAGCTGCAACAACATGCTTTATCG 211669 ||||||||||||||||||| |||||||| |||| || ||||||| | || || Sbjct 120591 TTGGTTGGTTTGGTGTTCTAATGATCCCTACTCTTTTAACTGCAACTTCTGTGTTCATTA 120532 Query 211670 TAGCATTCATCGCAGCACCTCCCGTTGATATCGACGGAATCCGTGAACCAGTAGCTGGTT 211729 | ||||| | || |||||||| || || ||||| || |||||||| || ||| | |||| Sbjct 120531 TCGCATTTGTTGCTGCACCTCCTGTAGACATCGATGGTATCCGTGAGCCTGTATCAGGTT 120472 Query 211730 CATTCATGTATGGTAACAACATCATCTCTGGTGCAGTTGTTCCATCTTCAAACGCAATCG 211789 | | | || |||||||||||||| |||||||| |||||||| | ||||||||||| | Sbjct 120471 CTCTACTTTACGGTAACAACATCATTTCTGGTGCTGTTGTTCCTACATCAAACGCAATTG 120412 Query 211790 GTTTACACTTCTATCCTATCTGGGAAGCAGCAACTCTTGATGAGTGGCTCTACAATGGTG 211849 || | |||||||| || || |||||||| || | ||||| || ||||| ||||| |||| Sbjct 120411 GTCTGCACTTCTACCCAATTTGGGAAGCTGCTTCACTTGACGAATGGCTTTACAACGGTG 120352 Query 211850 GTCCTTACCAGTTGGTAATCTTCCACTTCCTTATCGGAATCT-CAGCATACATGGGAAGA 211908 |||||||||| | | | | |||||| | | || || | | || |||||||| | Sbjct 120351 GTCCTTACCAACTAATCGTATGTCACTTCTTCCTAGGCATTTGCTGC-TACATGGGTCGT 120293 Query 211909 CAGTGGGAACTTTCATACCGTTTAGGTATGCGTCCTTGGATCTGTGTTGCTTATTCAGCA 211968 ||||||||||||| | ||||||||| |||||||| |||||| ||| ||||| || ||| Sbjct 120292 GAGTGGGAACTTTCTTTCCGTTTAGGAATGCGTCCATGGATCGCTGTAGCTTACTCTGCA 120233 Query 211969 CCTGTATCAGCAGCTTTCGCTGTATTCCTTGTTTACCCATTCGGTCAGGGTTCATTCTCA 212028 || || |||| ||| ||||||||| | | ||||| ||||||| |||||||||||| Sbjct 120232 CCAGTTGCAGCTGCTACTGCTGTATTCATCATCTACCCTATCGGTCAAGGTTCATTCTCA 120173 Query 212029 GACGGTATGCCTTTAGGTATATCAGGAACATTCAACTTCATGTTCGTATTCCAAGCAGAA 212088 || ||||||||||| ||||| |||||||| |||||||||||| | || |||||||| || Sbjct 120172 GATGGTATGCCTTTGGGTATTTCAGGAACTTTCAACTTCATGATTGTTTTCCAAGCTGAG 120113 Query 212089 CATAACATCCTTATGCACCCATTCCATATGGCAGGTGTTGCAGGTATGTTCGGTGGAGCA 212148 || ||||||||||||||||||||||| ||| |||||||| ||| |||||||||| || Sbjct 120112 CACAACATCCTTATGCACCCATTCCACATGCTTGGTGTTGCTGGTGTGTTCGGTGGTTCA 120053 Query 212149 TTATTCTCTGCTATGCACGGTTCTCTTGTTACATCTTCACTTATCCGTGAAACCACTGGT 212208 | ||||| ||||||||||||||||| || || |||||||||||||||||||| |||| Sbjct 120052 CTTTTCTCAGCTATGCACGGTTCTCTAGTAACTTCTTCACTTATCCGTGAAACTACTGAG 119993 Query 212209 TTAGATTCACAGAACTATGGTTACAAGTTCGGACAAGAAGAAGAGACATATAACATCGTT 212268 || ||| ||| ||||||||| ||||| ||||||||||| || || ||||| ||| Sbjct 119992 AACGAATCAGCAAACGCTGGTTACAAATTCGGTCAAGAAGAAGAAACTTACAACATTGTT 119933 Query 212269 GCTGCACATGGATACTTCGGTAGACTTATCTTCCAGTATGCATCATTCAACAACAGCAGA 212328 |||||||| || ||||| ||| | || |||||||| || || |||||||||||| | Sbjct 119932 GCTGCACACGGTTACTTTGGTCGTCTAATCTTCCAATACGCTTCATTCAACAACTCTCGT 119873 Query 212329 AGTTTACACTTCTTCCTCGCATCATGGCCTGTTATCTGTGTATGGTTAACCTCTATGGGT 212388 | ||||||||||| || | |||||||| | || | ||||| || || | ||| Sbjct 119872 TCACTTCACTTCTTCCTTGCTGCTTGGCCTGTAGTTGGTATCTGGTTTACTGCTCTTGGT 119813 Query 212389 ATCTGCACAATGGCATTCAACCTAAATGGATTCAACTTCAACCAATCAGTTGTTGATGCA 212448 |||| || |||||||||||||| || ||||||||||||||||| |||||||| || | Sbjct 119812 ATCTCTACTATGGCATTCAACCTTAACGGATTCAACTTCAACCAGTCAGTTGTAGACTCT 119753 Query 212449 TCAGGTAAGGTTGTTCCTACTTGGGGTGATGTTCTTAACAGAGCAAACCTTGGTATGGAA 212508 |||| ||| | ||||||||||| | | ||| | || ||||||||||||||| Sbjct 119752 CAAGGTCGCGTTATCAACACTTGGGGTGACATCATCAACCGTGCCAACCTTGGTATGGAA 119693 Query 212509 GTTATGCACGAAAGAAATGCACACAACTTCCCACTTGACTTAGCATC 212555 || |||||||||||||| ||||||||||||||||| ||| | || || Sbjct 119692 GTAATGCACGAAAGAAACGCACACAACTTCCCACTAGACCTTGCTTC 119646 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 807554129989360