Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Coccomyxa_20sp._20LA000219_20[genbank_20GCA_5F000812005.1_202015-01- 02] 106 sequences; 48,546,496 total letters Query= NC_006884.2 Length=178249 Score E Sequences producing significant alignments: (Bits) Value seq18 737 0.0 seq17 526 2e-144 >seq18 Length=145863 Score = 737 bits (816), Expect = 0.0 Identities = 762/991 (77%), Gaps = 10/991 (1%) Strand=Plus/Minus Query 170666 TTTTGTGAGTGGGTAACATCCACTGACAATCGCATCTACGTTGGTTGGTTTGGTGTCTTA 170725 || ||||| ||||| || |||||| || ||| | ||| |||||||||||||||| || Sbjct 120631 TTCTGTGAATGGGTTACTAGCACTGAAAACCGCCTTTACATTGGTTGGTTTGGTGTTCTA 120572 Query 170726 ATGATCCCATGTCTTCTAACTGCTGCTGCTTGTTTCATTGTAGCATTCATCGCTGCTCCT 170785 |||||||| |||| ||||||| || || |||||| | ||||| | ||||| ||| Sbjct 120571 ATGATCCCTACTCTTTTAACTGCAACTTCTGTGTTCATTATCGCATTTGTTGCTGCACCT 120512 Query 170786 CCAGTCGATATCGACGGAATCAGAGAACCAGTTGCGGGTTCTTTCTTATATGGTAACAAC 170845 || || || ||||| || ||| | || || || | |||||| | | || ||||||||| Sbjct 120511 CCTGTAGACATCGATGGTATCCGTGAGCCTGTATCAGGTTCTCTACTTTACGGTAACAAC 120452 Query 170846 ATCATCTCTGGTGCTGTAGTTCCATCTTCAAACGCAATAGGATTACACTTCTATCCCATC 170905 ||||| ||||||||||| ||||| | ||||||||||| || | |||||||| || || Sbjct 120451 ATCATTTCTGGTGCTGTTGTTCCTACATCAAACGCAATTGGTCTGCACTTCTACCCAATT 120392 Query 170906 TGGGAAGCAGCCACTATGGACGAGTGGTTGTACAACGGAGGTCCTTACCAGTTAGTTATT 170965 |||||||| || | | ||||| ||| | |||||||| ||||||||||| || | | Sbjct 120391 TGGGAAGCTGCTTCACTTGACGAATGGCTTTACAACGGTGGTCCTTACCAACTAATCGTA 120332 Query 170966 TTCCACTTCCTTATTGGAATCT-CTGCCTACATGGGTAGACAGTGGGAACTATCATACAG 171024 | |||||| | | || || | |||| ||||||||| | |||||||||| || | | | Sbjct 120331 TGTCACTTCTTCCTAGGCATTTGCTGC-TACATGGGTCGTGAGTGGGAACTTTCTTTCCG 120273 Query 171025 ACTAGGAATGAGACCTTGGATATGTGTAGCATACTCAGCACCTGTATCTGCAGCATTTGC 171084 |||||||| | || ||||| |||||| ||||| ||||| || | || || ||| Sbjct 120272 TTTAGGAATGCGTCCATGGATCGCTGTAGCTTACTCTGCACCAGTTGCAGCTGCTACTGC 120213 Query 171085 AGTATTCCTTGTGTATCCATTCGGTCAGGGTTCATTCTCTGATGGTATGCCACTAGGTAT 171144 |||||| | | || || ||||||| ||||||||||| ||||||||||| | ||||| Sbjct 120212 TGTATTCATCATCTACCCTATCGGTCAAGGTTCATTCTCAGATGGTATGCCTTTGGGTAT 120153 Query 171145 CTCAGGTACGTTCAACTTCATGTTCGTGTTCCAAGCAGAACACAACATACTAATGCACCC 171204 ||||| || |||||||||||| | || |||||||| || |||||||| || |||||||| Sbjct 120152 TTCAGGAACTTTCAACTTCATGATTGTTTTCCAAGCTGAGCACAACATCCTTATGCACCC 120093 Query 171205 CTTCCATATGGCAGGTGTAGCAGGTATGTTCGGTGGTAGTCTCTTCAGTGCAATGCACGG 171264 ||||| ||| ||||| || ||| ||||||||||| || ||| || |||||||| Sbjct 120092 ATTCCACATGCTTGGTGTTGCTGGTGTGTTCGGTGGTTCACTTTTCTCAGCTATGCACGG 120033 Query 171265 TTCTCTAGTGACATCTTCTCTAATCAGAGAGACAACTGAGAACGAGAGTCA--AAACTAC 171322 ||||||||| || ||||| || ||| | || || ||||||||||| ||| |||| Sbjct 120032 TTCTCTAGTAACTTCTTCACTTATCCGTGAAACTACTGAGAACGAA--TCAGCAAACGCT 119975 Query 171323 GGCTATAAGTTCGGACAAGAAGAAGAAACATATAACATTGTTGCTGCTCATGGATACTTC 171382 || || || ||||| |||||||||||||| || |||||||||||||| || || ||||| Sbjct 119974 GGTTACAAATTCGGTCAAGAAGAAGAAACTTACAACATTGTTGCTGCACACGGTTACTTT 119915 Query 171383 GGTAGATTAATCTTCCAGTATGCATCATTCAACAACTCTCGTTCATTACACTTCTTCCTC 171442 ||| | |||||||||| || || ||||||||||||||||||||| | ||||||||||| Sbjct 119914 GGTCGTCTAATCTTCCAATACGCTTCATTCAACAACTCTCGTTCACTTCACTTCTTCCTT 119855 Query 171443 GCTGTATTCCCTGTAGTCTGTGTATGGTTAACCTCTATGGGTATCTGTACAATGGCATTC 171502 |||| | |||||||| || | ||||| || || | ||||||| ||| ||||||||| Sbjct 119854 GCTGCTTGGCCTGTAGTTGGTATCTGGTTTACTGCTCTTGGTATCTCTACTATGGCATTC 119795 Query 171503 AACCTTAACGGATTCAACTTCAACCAATCAGTTGTAGATGCAAACGGAAAGATTGTACCA 171562 |||||||||||||||||||||||||| ||||||||||| | | || | || || Sbjct 119794 AACCTTAACGGATTCAACTTCAACCAGTCAGTTGTAGACTCTCAAGGTCGCGT--TATCA 119737 Query 171563 ACA--TGGGGAGATGTTCTTAACAGAGCAAACCTTGGAATGGAAGTTATGCATGAAAGAA 171620 ||| ||||| || | | ||| | || |||||||| |||||||| ||||| ||||||| Sbjct 119736 ACACTTGGGGTGACATCATCAACCGTGCCAACCTTGGTATGGAAGTAATGCACGAAAGAA 119677 Query 171621 ATGCACACAACTTCCCACTAGACCTAGCATC 171651 | ||||||||||||||||||||||| || || Sbjct 119676 ACGCACACAACTTCCCACTAGACCTTGCTTC 119646 >seq17 Length=88650 Score = 526 bits (582), Expect = 2e-144 Identities = 742/1042 (71%), Gaps = 23/1042 (2%) Strand=Plus/Minus Query 171792 TGGTTTGACGTTCTTGATGATTGGTTAAAGAGAGATCGTTTCGTATTCATCGGATGGTCT 171851 |||||||| | | ||||| ||||| | || || || || ||| | || |||||| Sbjct 87630 TGGTTTGATGAAGTAGATGACTGGTTGCGCCGTGAACGATTTGTGTTCGTTGGCTGGTCT 87571 Query 171852 GGTCTTTTACTTTTACCTTGTGCTTACCTAGCAATCGGAGGTTGGTTCGTAGGAACTACT 171911 ||||| ||||| || ||| |||||||| ||| | || || ||||| |||||| || Sbjct 87570 GGTCTGTTACTCTTCCCTACAGCTTACCTTGCATTAGGTGGCTGGTTGACAGGAACCACA 87511 Query 171912 TTCGTGACCTCATGGTACACACATGGTATTGCATCCTCATATCTTGAGGGAGCAAACTTT 171971 ||||| || || |||||||||||||| ||||| || || | || ||| ||||| Sbjct 87510 TTCGTTACATCTTGGTACACACATGGACTTGCAAGTTCTTACTTAGAAGGATGCAACTTC 87451 Query 171972 TTAACTGCAGCAGTATCAACACCTGGTGATGCTATGGGTCATAGTCTATTGTTCCTATGG 172031 ||||| ||||| || ||||| || | | |||||||| | |||||||||||| Sbjct 87450 TTAACAGCAGCCGTTTCAACTCCAGCAAACAGCATGGGTCACTCATTGTTGTTCCTATGG 87391 Query 172032 GGACCTGAGGCACAAGGAGATCTTGTACGATGGTTTCAATTAGGTGGACTATGGAACTTT 172091 || |||||||||||||| || || || |||| ||| || ||||| || ||| || Sbjct 87390 GGGCCTGAGGCACAAGGTGACTTTACTCGCTGGTGTCAGTTGGGTGGTCTGTGGGCTTTC 87331 Query 172092 GTAGCATTACATGGAGTCTTTGGACTCATAGGTTTCATGCTTAGACAGTTTGAGATTGCA 172151 ||||| |||||||| | ||||| || || || || ||||| |||||||||| ||||| Sbjct 87330 GTAGCTTTACATGGTGCCTTTGCGCTTATTGGGTTTATGCTACGACAGTTTGAACTTGCA 87271 Query 172152 GGACTTGTTGGGATACGTCCTTACAACGCACTAGCATTCTCAGCAGTTATTGCAGTATTC 172211 || || | | |||||||||||||| | || ||||||||| |||||| || ||| Sbjct 87270 AGATCGGTAAAGCTTCGTCCTTACAACGCTATTGCCTTCTCAGCACCTATTGCTGTCTTC 87211 Query 172212 ACGAGCA-TCTTTCTAATATATCCATTAGGTCAGCATAGTTGGTTCTTCGCACCTTCATT 172270 | || |||| || || ||||| || || || | |||||||| || ||| || Sbjct 87210 GT-ATCAGTCTTCCTTATCTATCCTTTGGGACAATCAGGCTGGTTCTTTGCGCCTAGCTT 87152 Query 172271 TGGTGTCGCAGCAATCTTTCGTTATATTTTATTCATACAGGGTTTCCACAATATAACTCT 172330 |||||| || |||||||| || | |||| | ||| | || ||||||||||| || || Sbjct 87151 TGGTGTAGCGGCAATCTTCCGATTTATTCTTTTCTTCCAAGGTTTCCACAACTGGACGCT 87092 Query 172331 TAATCCATTTCATATGATGGGTGTAGCAGGTATACTTGGTGGAGCATTACTATGTGCCAT 172390 ||| || || || ||||||||||| |||||| | || |||| ||| | |||||||| || Sbjct 87091 TAACCCTTTCCACATGATGGGTGTGGCAGGTGTTCTAGGTGCTGCACTTCTATGTGCAAT 87032 Query 172391 ACATGGTGCAACAGTACAGAACACATTGTATGAAGACACATCACAATACACTGAAGGTAA 172450 || || ||||||||| ||||||| | | ||||| | ||| ||| Sbjct 87031 TCACGGAGCAACAGTAGAGAACACTCTTTTTGAAG------------ATGGTGACGGTGC 86984 Query 172451 GATTCAATCTACAACTTTCAGAGCATTCGATCCTACACAGGAAGAAGAAACTTATAGTAT 172510 || || |||||| | |||||| | || || || | ||||| || || ||| Sbjct 86983 GA--------AC-ACTTTCCGTGCATTCAACCCAACGCAAGCCGAAGAGACATACTCTAT 86933 Query 172511 GATTACTGCTAACAGATTCTGGTCACAGATATTTGGTATAGCATTTTCAAACAAAAGATT 172570 | | || |||||| | || |||||||| || |||||| |||| || ||||||||| | | Sbjct 86932 GGTAACAGCTAACCGTTTTTGGTCACAAATCTTTGGTGTAGCTTTCTCAAACAAACGTTG 86873 Query 172571 CTTACACTTCCTTATGTTGTTCGTACCTGTCATGGGTATGTGGACATCATCTATAGGTAT 172630 | || ||| ||||| | || || ||||| | ||| | |||| | || ||| | Sbjct 86872 GCTTCATTTCTTTATGCTTTTTGTCCCTGTAACTGGTCTTTGGATGAGTGCAATTGGTGT 86813 Query 172631 CGTAGGTCTTGCACTTAACCTCAGAGCATACGACTTTGTATCTCAAGAGATAAGAGCAGC 172690 | || ||||| |||||| | ||||||| |||||||| || |||||||| | ||||| Sbjct 86812 TATCGGACTTGCTCTTAACTTACGAGCATATGACTTTGTTTCACAAGAGATCCGTGCAGC 86753 Query 172691 AGAAGACCCAGAGTTTGAAACCTTCTACACTAAGAACATTCTTCTTAATGAAGGTATGAG 172750 || ||||| || || || || |||||||| || ||||||||||| || |||||||| || Sbjct 86752 TGAGGACCCTGAATTCGAGACTTTCTACACAAAAAACATTCTTCTAAACGAAGGTATTAG 86693 Query 172751 AGCATGGATGTCATCTGTCGATCAACCCCATGAGAACTTTGTGTTCCCAGAAGAAGTCTT 172810 |||||||||| | || || || || ||||| || |||| |||||||| || || || Sbjct 86692 AGCATGGATGGCGGCTCAGGACCAGCCACATGAAAAACTTGTATTCCCAGAGGAGGTTTT 86633 Query 172811 GCCACGAGGCAACGCACTATAA 172832 ||||| || ||||| || ||| Sbjct 86632 ACCACGTGGAAACGCTCTTTAA 86611 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 570268044393840