Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Coccomyxa_20sp._20LA000219_20[genbank_20GCA_5F000812005.1_202015-01- 02] 106 sequences; 48,546,496 total letters Query= NC_007346.1 Length=407339 Score E Sequences producing significant alignments: (Bits) Value seq57 111 4e-19 >seq57 Length=1368 Score = 111 bits (122), Expect = 4e-19 Identities = 256/381 (67%), Gaps = 10/381 (3%) Strand=Plus/Minus Query 364110 CGCACAGAAGCTATGGTTTGCCATCATGGATTCGCAGATTGAGACAGGAACACCCTATAT 364169 ||||| || ||| ||| || ||| ||| |||||||| ||||| || ||||| || | Sbjct 1060 CGCACGGACGCTGTGGAACGCGATCCTGGTCTCGCAGATCGAGACCGGGACACCGTACCT 1001 Query 364170 GTTGTACAAAGATTCGTGCAACCGCAAGTCCAACCAGCAGCACCTT-GGTACAATTCAGC 364228 | | | ||| ||| | |||||||| |||||||||||| |||| ||| || || | || || Sbjct 1000 GCTCTTCAAGGATGCCTGCAACCGGAAGTCCAACCAG-AGCAACTTGGGGACCA-TCCGC 943 Query 364229 AG-AGCAACCTATGTACCGAGATTATTGAATACACCGCTCCCGACGAGACTGCCGTATGT 364287 || ||| || || | |||||| | | ||| | |||| ||||| || || || Sbjct 942 AGCTCCAATCTGTGCAGTGAGATTCTGCAGTACTCGAGCCCCGCAGAGACGGCGGTGTGC 883 Query 364288 AACCTTGCGTCGATCGCGCTTCCGGCGTTTGTAA------AAGATGGTACTTTTGACCAC 364341 ||||| |||||||| || ||| | || | | | ||| | | || ||| | Sbjct 882 AACCTCAGCTCGATCGCCCTGCCGACATTCGCGAGGGCCGAGGATTGGAGCTTCGACTTC 823 Query 364342 CAGCATCTTTATGACGTAACCTATCATGCTACTTGCAATCTCGACAAGGTTATCGACAAG 364401 || || | |||| ||| | || | |||| || ||||||| ||||||| Sbjct 822 GAGGGGCTGCACAACGTGACCAAGGTGGCCATGCGCAACCTGAACAAGGTGATCGACATC 763 Query 364402 AATTATTATCCAATTCCTGAAGCCGAGCGTTCTAATATGCGTCATCGCCCGATTGGTCTT 364461 ||||| ||||| | || || || |||| || |||| || ||||| ||| | || | Sbjct 762 AATTACTATCCGACGCCCGAGGCAGAGCTCTCCAATAGACGCCATCGACCGGTGGGCATC 703 Query 364462 GGTGTACAGGGCCTCGCTGAC 364482 || || ||||| || |||||| Sbjct 702 GGGGTTCAGGGGCTTGCTGAC 682 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1303351829882892