Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Coccomyxa_20sp._20LA000219_20[genbank_20GCA_5F000812005.1_202015-01- 02] 106 sequences; 48,546,496 total letters Query= NC_007921.1 Length=147544 Score E Sequences producing significant alignments: (Bits) Value seq100 122 8e-23 seq2 122 8e-23 seq106 113 4e-20 seq99 96.9 3e-15 seq20 93.3 4e-14 >seq100 Length=2336451 Score = 122 bits (134), Expect = 8e-23 Identities = 153/210 (73%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 131007 GCCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCT 131066 |||||| |||| ||||||||| | || | ||| |||||||| || |||||||| ||| Sbjct 981628 GCCACCACGCAGACGCAGCACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGC 981569 Query 131067 CATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGG 131126 || ||||| ||||| ||||||||||| || |||| | ||||||||||||||||| Sbjct 981568 CAGCGTGCGGCCATCCTCCAGCTGCTTGCCGGCAAAGATCAGGCGCTGCTGGTCCGGAGG 981509 Query 131127 GATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGAT 131186 |||||| || ||||| ||| || ||| | | ||| | || || | |||||| | Sbjct 981508 GATTCCCTCCTTGTCCTGGATCTTGCTCTTCACATTCTCGATGGTGTCAGAGGACTCCAC 981449 Query 131187 GTCGACGGTAACGGTTTTACCGGTTAGAGT 131216 || | ||| | ||| || || || || || Sbjct 981448 CTCCAGGGTGATGGTCTTGCCAGTGAGGGT 981419 Score = 116 bits (128), Expect = 3e-21 Identities = 151/209 (72%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 ||||| |||| |||||||| | || | ||| |||||||| || |||||||| ||| | Sbjct 982033 CCACCACGCAGGCGCAGCACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGCC 981974 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | ||||| |||||| ||||||||||| || |||| | |||||||||||||| ||| Sbjct 981973 AGCGTGCGGCCGTCCTCCAGCTGCTTGCCGGCAAAGATCAGGCGCTGCTGGTCCGGGGGG 981914 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 ||||| || ||||| ||| || ||| | | ||| | || || | |||||| | Sbjct 981913 ATTCCCTCCTTGTCCTGGATCTTGCTCTTCACGTTCTCGATGGTGTCAGAGGACTCCACC 981854 Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGT 131216 || | ||| | ||| || || || || || Sbjct 981853 TCCAGGGTGATGGTCTTGCCAGTGAGGGT 981825 Score = 113 bits (124), Expect = 4e-20 Identities = 151/210 (72%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 131007 GCCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCT 131066 |||||| |||| ||||||||| | || | ||| |||||||| || |||||||| ||| Sbjct 981221 GCCACCACGCAGACGCAGCACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGC 981162 Query 131067 CATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGG 131126 || ||||| ||||| ||||||||||| || |||| | ||||||||||||||||| Sbjct 981161 CAGCGTGCGGCCATCCTCCAGCTGCTTGCCGGCAAAGATCAGGCGCTGCTGGTCCGGAGG 981102 Query 131127 GATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGAT 131186 || || || ||||| ||| || ||| | | ||| | || || | |||||| | Sbjct 981101 AATGCCCTCCTTGTCCTGGATCTTGCTCTTCACGTTCTCGATGGTGTCAGAGGACTCCAC 981042 Query 131187 GTCGACGGTAACGGTTTTACCGGTTAGAGT 131216 || | || | ||| || || || ||||| Sbjct 981041 CTCCAGTGTGATGGTCTTGCCAGTGAGAGT 981012 Score = 109 bits (120), Expect = 5e-19 Identities = 105/135 (78%), Gaps = 0/135 (0%) Strand=Plus/Minus Query 131007 GCCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCT 131066 ||| || |||| |||||||| | || | ||| |||||||| || |||||||| ||| Sbjct 980819 GCCTCCACGCAGGCGCAGCACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGC 980760 Query 131067 CATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGG 131126 || ||||| ||||| ||||||||||| || |||| | |||||||||||||||||| Sbjct 980759 CAGTGTGCGGCCATCCTCCAGCTGCTTGCCGGCAAAGATCAGACGCTGCTGGTCCGGAGG 980700 Query 131127 GATTCCTTCTTTGTC 131141 ||| || || ||||| Sbjct 980699 GATGCCCTCCTTGTC 980685 >seq2 Length=534433 Score = 122 bits (134), Expect = 8e-23 Identities = 124/162 (77%), Gaps = 0/162 (0%) Strand=Plus/Minus Query 145625 GCGATCGACGCCAAATTACAAACTGCCGTCTCCTCGGCGTCGCTGTATTGTACGATCTCG 145684 || || || |||||||| || || || ||||| || || |||| | || ||||| Sbjct 280806 GCAATTGATGCCAAATTGCATACAGCTGTCTCTTCAGCAGATGTGTACTCCACAATCTCA 280747 Query 145685 GCGCACAAATTGCTACATTTGATGGTTCCCAGATTTTGCTGATTACTTTTCCTGTTGCAC 145744 | ||| | |||||| || |||||||| |||||||| |||||||| ||||||||||| Sbjct 280746 GTGCAGAGATTGCTGCACTTGATGGTGCCCAGATTCTGCTGATTTGACTTCCTGTTGCAG 280687 Query 145745 GCGTCCTTGTAGAGCATGTACGGTCCGCCAGTCTCCACCTGC 145786 | |||||||||||||||||| || ||| ||||| |||||| Sbjct 280686 GAGTCCTTGTAGAGCATGTATGGGTTGCCTGTCTCAACCTGC 280645 >seq106 Length=3132237 Score = 113 bits (124), Expect = 4e-20 Identities = 151/210 (72%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 131007 GCCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCT 131066 |||||| |||| |||||||| | || | ||| |||||||| || |||||||| ||| Sbjct 2288514 GCCACCACGCAGGCGCAGCACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGC 2288573 Query 131067 CATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGG 131126 || |||||| ||||| ||||||||||| || |||| | |||||||||||||| || Sbjct 2288574 CAGGGTGCGGCCATCCTCCAGCTGCTTGCCGGCAAAGATCAGGCGCTGCTGGTCCGGGGG 2288633 Query 131127 GATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGAT 131186 ||| || || ||||| ||| || ||| | | ||| | || || | |||||| | Sbjct 2288634 GATGCCCTCCTTGTCCTGGATCTTGGACTTCACGTTCTCGATGGTGTCAGAGGACTCCAC 2288693 Query 131187 GTCGACGGTAACGGTTTTACCGGTTAGAGT 131216 || | || | ||| || || || ||||| Sbjct 2288694 CTCCAGCGTGATGGTCTTGCCAGTGAGAGT 2288723 Score = 109 bits (120), Expect = 5e-19 Identities = 150/210 (71%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 131007 GCCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCT 131066 |||||| |||| |||||||| | || | ||| |||||||| || |||||||| || Sbjct 2288061 GCCACCACGCAGGCGCAGCACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCTGC 2288120 Query 131067 CATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGG 131126 || |||||| ||||| ||||||||||| || |||| | |||||||||||||| || Sbjct 2288121 CAGGGTGCGGCCATCCTCCAGCTGCTTGCCGGCAAAGATCAGGCGCTGCTGGTCCGGGGG 2288180 Query 131127 GATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGAT 131186 ||| || || ||||| ||| || ||| | | ||| | || || | |||||| | Sbjct 2288181 GATGCCCTCCTTGTCCTGGATCTTGGACTTCACGTTCTCGATGGTGTCAGAGGACTCCAC 2288240 Query 131187 GTCGACGGTAACGGTTTTACCGGTTAGAGT 131216 || | || | ||| || || || ||||| Sbjct 2288241 CTCCAGCGTGATGGTCTTGCCAGTCAGAGT 2288270 Score = 109 bits (120), Expect = 5e-19 Identities = 150/210 (71%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 131007 GCCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCT 131066 |||||| |||| |||||||| | || | ||| |||||||| || |||||||| ||| Sbjct 2288913 GCCACCACGCAGGCGCAGCACCAGGTGGAGGGTAGACTCCTTCTGGATGTTGTAGTCGGC 2288972 Query 131067 CATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGG 131126 || |||||| ||||| ||||||||||| ||| |||| | ||||||||||| || || Sbjct 2288973 CAGGGTGCGGCCATCCTCCAGCTGCTTGCCGGCGAAGATGAGGCGCTGCTGGTCTGGGGG 2289032 Query 131127 GATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGAT 131186 || || || ||||| ||| || ||||| | || | || || | ||||| | Sbjct 2289033 AATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTTTCGATGGTGTCAGAAGACTCCAC 2289092 Query 131187 GTCGACGGTAACGGTTTTACCGGTTAGAGT 131216 || | ||| | ||| || || || ||||| Sbjct 2289093 CTCAAGGGTGATGGTCTTGCCAGTCAGAGT 2289122 Score = 96.9 bits (106), Expect = 3e-15 Identities = 161/228 (71%), Gaps = 5/228 (2%) Strand=Plus/Minus Query 46085 TGCCGTGCGTGCGCAAGAAAACCGACTGGGCGATGAAGTGGATCAACAGCAGCACCGCGA 46144 |||| |||||| |||||| | | |||||| | | |||||| |||| || || Sbjct 1548107 TGCCATGCGTGGCCAAGAAGGCGCAGTGGGCGCAGCACTGGATCGGCAGCGCCA--GCAG 1548050 Query 46145 CTTTCGCCGAGCGTATGGTGGCCTTTGCGATTGTGGAGGGCGTCtttttttCTGGCAGTT 46204 |||| || ||||| ||||||| || || ||||||||| || || ||| | Sbjct 1548049 CTTT-GCGGAGCGCCTGGTGGCGTTCGCCTGCGTGGAGGGCATCCACTTCAGCGGCTCCT 1547991 Query 46205 TTGCCGCCATCTTTTACATCAA-AACCAAGGGCATCATGCCCGGCCTGACGTTTAGCAAC 46263 | ||||||||| | |||| || | || ||||||||||||| || || |||| Sbjct 1547990 TCTGCGCCATCTTCTGGCTCAAGAAGCGCCTGC-TCATGCCCGGCCTCACCTTCTCCAAC 1547932 Query 46264 GAGCTGATATCGCGCGACGAGGGCCTGCATACGGACTTTGCGTGTCTC 46311 ||||| || |||||||||||||||||||| || ||||| || || ||| Sbjct 1547931 GAGCTCATCTCGCGCGACGAGGGCCTGCACACCGACTTCGCCTGCCTC 1547884 >seq99 Length=2590953 Score = 96.9 bits (106), Expect = 3e-15 Identities = 150/213 (70%), Gaps = 1/213 (0%) Strand=Plus/Minus Query 131004 TGAGCCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATC 131063 || ||||||||||| |||||||| | || | | | ||||| || || ||||| || || Sbjct 315590 TGTGCCACCGCGCAGGCGCAGCACCAGGTGGAGGATGGACTC-TTCTGGATGTTATAGTC 315532 Query 131064 GCTCATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGG 131123 | || || ||| ||||||||||||||| || || |||| | |||| ||||||||| Sbjct 315531 GGCCAGGGGGCGGCTGTCCTCTAGCTGCTTACCGGCAAAGATCAGGCGCTACTGGTCCGG 315472 Query 131124 AGGGATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTC 131183 ||||| || || ||||| || || ||||| | ||| | || || | ||||| Sbjct 315471 GGGGATGCCCTCCTTGTCCTGGACCTTGGACTTGACGTTCTCGATGGTGTCAGATGACTC 315412 Query 131184 GATGTCGACGGTAACGGTTTTACCGGTTAGAGT 131216 | || | ||| | ||| || ||||| || || Sbjct 315411 CACCTCCAAGGTGATGGTCTTGCCGGTGAGGGT 315379 >seq20 Length=132363 Score = 93.3 bits (102), Expect = 4e-14 Identities = 298/452 (66%), Gaps = 19/452 (4%) Strand=Plus/Plus Query 46099 AAGAAAACCGACTGGGCGATGAAGTGGATCAACAGCAGCACCGCGACTTTCGCCGAGCGT 46158 ||||| ||| |||||| |||||||||| | | || | | || |||||| |||| Sbjct 119488 AAGAAGGCCGCGTGGGCGCAGAAGTGGATCGCCGACCGCGACTCCACGTTCGCCAAGCGC 119547 Query 46159 ATGGTGGCCTTTGCGATTGTGGAGGGCGTCtttttttCTGGCAGTTTTGCCGCCATCTTT 46218 |||| ||| || || |||||||||||| | || || |||||||| ||| ||| Sbjct 119548 CTGGTCTGCTTCGCCATCGTGGAGGGCGTCATGTTCTCGGGCAGTTTCTGCGCGCTCTAC 119607 Query 46219 TACATCAAAACCAAGGGCA---TCATGCCCGGCCTGACGTTTAGCAACGAGCTGATATCG 46275 | || |||| ||| ||||| ||||| ||||| |||| || ||| || Sbjct 119608 TGGCTC---CGCAAGCGCAATCTCATGAAGGGCCTCACGTTCTCCAACTCCCTCATAGCG 119664 Query 46276 CGCGACGAGGGCCTGCATACGGACTTTGCGTGTCTCTACTATAACACTCGCGTGCACGAC 46335 ||||||||||||||||| || || || || || || | || ||| ||| | || Sbjct 119665 CGCGACGAGGGCCTGCACACCGAGCACGCCTGCATC--CTGT-ACTCTCACGTCGTCAAC 119721 Query 46336 AAGCTTGCGCCCGACACCG---TGCTGAGCATGTTCAAGGAGGCGGTGGCCATTGAGAAG 46392 || || | ||||| | | | |||| | ||||||| || ||||| |||| Sbjct 119722 AAACT---GACCGACGAGGAGATCCACCGCATCATGGAGGAGGCTGTCGCCATCGAGACC 119778 Query 46393 GAGTT-TTTTACGGCCGCACTGCCCGCTGCCCTGCTGGGCATGAACGCACAGTCA-ATGT 46450 ||||| | | | | || | || || ||| |||| ||||||||| | || || ||| Sbjct 119779 GAGTTCATCTGCTCCTCCATTCCCTGC-GCCATGCTCGGCATGAACTC-CAAACAGATGA 119836 Query 46451 GCGACTACATCGAGTTTGTAGCGGACCGACTGCTCGTGCAGCTTCACCAGCCGAAGCATT 46510 |||| | |||| || || || ||||| || ||| | ||||| || || |||| | Sbjct 119837 GCGAATTCATCCGATTCGTCGCCGACCGCCTCCTCCTCCAGCTCGGTCATCCCAAGCTCT 119896 Query 46511 TTCACGCGCGCAATCCATTTGAGTTTATGAAC 46542 ||||| ||||| || || || ||| || Sbjct 119897 ACGGGGCGCGGAATCCGTTCGATTTCATGGAC 119928 Score = 93.3 bits (102), Expect = 4e-14 Identities = 298/452 (66%), Gaps = 19/452 (4%) Strand=Plus/Plus Query 46099 AAGAAAACCGACTGGGCGATGAAGTGGATCAACAGCAGCACCGCGACTTTCGCCGAGCGT 46158 ||||| ||| |||||| |||||||||| | | || | | || |||||| |||| Sbjct 121400 AAGAAGGCCGCGTGGGCGCAGAAGTGGATCGCCGACCGCGACTCCACGTTCGCCAAGCGC 121459 Query 46159 ATGGTGGCCTTTGCGATTGTGGAGGGCGTCtttttttCTGGCAGTTTTGCCGCCATCTTT 46218 |||| ||| || || |||||||||||| | || || |||||||| ||| ||| Sbjct 121460 CTGGTCTGCTTCGCCATCGTGGAGGGCGTCATGTTCTCGGGCAGTTTCTGCGCGCTCTAC 121519 Query 46219 TACATCAAAACCAAGGGCA---TCATGCCCGGCCTGACGTTTAGCAACGAGCTGATATCG 46275 | || |||| ||| ||||| ||||| ||||| |||| || ||| || Sbjct 121520 TGGCTC---CGCAAGCGCAATCTCATGAAGGGCCTCACGTTCTCCAACTCCCTCATAGCG 121576 Query 46276 CGCGACGAGGGCCTGCATACGGACTTTGCGTGTCTCTACTATAACACTCGCGTGCACGAC 46335 ||||||||||||||||| || || || || || || | || ||| ||| | || Sbjct 121577 CGCGACGAGGGCCTGCACACCGAGCACGCCTGCATC--CTGT-ACTCTCACGTCGTCAAC 121633 Query 46336 AAGCTTGCGCCCGACACCG---TGCTGAGCATGTTCAAGGAGGCGGTGGCCATTGAGAAG 46392 || || | ||||| | | | |||| | ||||||| || ||||| |||| Sbjct 121634 AAACT---GACCGACGAGGAGATCCACCGCATCATGGAGGAGGCTGTCGCCATCGAGACC 121690 Query 46393 GAGTT-TTTTACGGCCGCACTGCCCGCTGCCCTGCTGGGCATGAACGCACAGTCA-ATGT 46450 ||||| | | | | || | || || ||| |||| ||||||||| | || || ||| Sbjct 121691 GAGTTCATCTGCTCCTCCATTCCCTGC-GCCATGCTCGGCATGAACTC-CAAACAGATGA 121748 Query 46451 GCGACTACATCGAGTTTGTAGCGGACCGACTGCTCGTGCAGCTTCACCAGCCGAAGCATT 46510 |||| | |||| || || || ||||| || ||| | ||||| || || |||| | Sbjct 121749 GCGAATTCATCCGATTCGTCGCCGACCGCCTCCTCCTCCAGCTCGGTCATCCCAAGCTCT 121808 Query 46511 TTCACGCGCGCAATCCATTTGAGTTTATGAAC 46542 ||||| ||||| || || || ||| || Sbjct 121809 ACGGGGCGCGGAATCCGTTCGATTTCATGGAC 121840 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 472012174583040