Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Coccomyxa_20sp._20LA000219_20[genbank_20GCA_5F000812005.1_202015-01- 02] 106 sequences; 48,546,496 total letters Query= NC_008293.1 Length=135454 Score E Sequences producing significant alignments: (Bits) Value seq100 113 4e-20 seq106 104 2e-17 >seq100 Length=2336451 Score = 113 bits (124), Expect = 4e-20 Identities = 142/195 (73%), Gaps = 0/195 (0%) Strand=Plus/Plus Query 25016 GACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCTGACACTATCGAGTCACT 25075 |||| | || || || |||||||| | || |||||||| |||||||| |||||| | Sbjct 981011 GACTCTCACTGGCAAGACCATCACACTGGAGGTGGAGTCCTCTGACACCATCGAGAACGT 981070 Query 25076 GAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAACAGCGGATTATTTTTGC 25135 |||| || ||| ||||| || || ||||| || ||||| ||||| | || ||||| Sbjct 981071 GAAGAGCAAGATCCAGGACAAGGAGGGCATTCCTCCGGACCAGCAGCGCCTGATCTTTGC 981130 Query 25136 CGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAATATTCAAAAAGAATCCAC 25195 |||||| || | || |||| ||||| ||| ||| ||||| || || || || ||||| Sbjct 981131 CGGCAAGCAGCTGGAGGATGGCCGCACGCTGGCCGACTACAACATCCAGAAGGAGTCCAC 981190 Query 25196 GCTACATTTAGTGCT 25210 || || | ||||| Sbjct 981191 CCTCCACCTGGTGCT 981205 Score = 109 bits (120), Expect = 5e-19 Identities = 138/190 (73%), Gaps = 0/190 (0%) Strand=Plus/Plus Query 25021 TGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCTGACACTATCGAGTCACTGAAGC 25080 |||| || || |||||||| | || |||||||| |||||||| |||||| ||||| Sbjct 980614 TGACTGGCAAGACCATCACACTGGAGGTGGAGTCCTCTGACACCATCGAGAACGTGAAGA 980673 Query 25081 AAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAACAGCGGATTATTTTTGCCGGCA 25140 || ||| ||||| || || || || || ||||| ||||| | || |||||||||| Sbjct 980674 GCAAGATCCAGGACAAGGAGGGCATCCCTCCGGACCAGCAGCGTCTGATCTTTGCCGGCA 980733 Query 25141 AACAATTAGAAGATGATCGCACTGTGGGCGATTACAATATTCAAAAAGAATCCACGCTAC 25200 | || | || |||| ||||| ||| ||| ||||| || || || || ||||| || | Sbjct 980734 AGCAGCTGGAGGATGGCCGCACACTGGCCGACTACAACATCCAGAAGGAGTCCACCCTCC 980793 Query 25201 ATTTAGTGCT 25210 | | ||||| Sbjct 980794 ACCTGGTGCT 980803 Score = 100 bits (110), Expect = 2e-16 Identities = 129/178 (72%), Gaps = 0/178 (0%) Strand=Plus/Plus Query 25033 CCATCACAGTCGAAGTGGAGTCGTCTGACACTATCGAGTCACTGAAGCAAAAAATCACTG 25092 ||||||| | || |||||||| |||||||| |||||| ||||| || ||| | Sbjct 981435 CCATCACCCTGGAGGTGGAGTCCTCTGACACCATCGAGAATGTGAAGAGCAAGATCCAGG 981494 Query 25093 ACAAAGAAGGGATTCCACCTGACCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAG 25152 |||| || || || || || ||||| ||||| | || ||||||||||| || | || | Sbjct 981495 ACAAGGAGGGAATCCCTCCGGACCAGCAGCGCCTGATCTTTGCCGGCAAGCAGCTGGAGG 981554 Query 25153 ATGATCGCACTGTGGGCGATTACAATATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 ||| ||||| ||| ||| ||||| || || || || ||||| || || | ||||| Sbjct 981555 ATGGCCGCACGCTGGCCGACTACAACATCCAGAAGGAGTCCACCCTCCACCTGGTGCT 981612 Score = 96.9 bits (106), Expect = 3e-15 Identities = 128/178 (72%), Gaps = 0/178 (0%) Strand=Plus/Plus Query 25033 CCATCACAGTCGAAGTGGAGTCGTCTGACACTATCGAGTCACTGAAGCAAAAAATCACTG 25092 ||||||| | || |||||||| |||||||| |||||| ||||| || ||| | Sbjct 981841 CCATCACCCTGGAGGTGGAGTCCTCTGACACCATCGAGAACGTGAAGAGCAAGATCCAGG 981900 Query 25093 ACAAAGAAGGGATTCCACCTGACCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAG 25152 |||| || || || || || ||||| ||||| | || ||||||||||| || | || | Sbjct 981901 ACAAGGAGGGAATCCCCCCGGACCAGCAGCGCCTGATCTTTGCCGGCAAGCAGCTGGAGG 981960 Query 25153 ATGATCGCACTGTGGGCGATTACAATATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 | | ||||| ||| ||| ||||| || || || || ||||| || || | ||||| Sbjct 981961 ACGGCCGCACGCTGGCCGACTACAACATCCAGAAGGAGTCCACCCTCCACCTGGTGCT 982018 >seq106 Length=3132237 Score = 104 bits (114), Expect = 2e-17 Identities = 140/195 (72%), Gaps = 0/195 (0%) Strand=Plus/Minus Query 25016 GACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCTGACACTATCGAGTCACT 25075 |||| |||| || || ||||||| | || |||||||| |||||||| |||||| | Sbjct 2288271 GACTCTGACTGGCAAGACCATCACGCTGGAGGTGGAGTCCTCTGACACCATCGAGAACGT 2288212 Query 25076 GAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAACAGCGGATTATTTTTGC 25135 |||| || ||| ||||| || || || || || ||||| ||||| | || ||||| Sbjct 2288211 GAAGTCCAAGATCCAGGACAAGGAGGGCATCCCCCCGGACCAGCAGCGCCTGATCTTTGC 2288152 Query 25136 CGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAATATTCAAAAAGAATCCAC 25195 |||||| || | || |||| ||||| ||| || ||||| || || || || ||||| Sbjct 2288151 CGGCAAGCAGCTGGAGGATGGCCGCACCCTGGCAGACTACAACATCCAGAAGGAGTCCAC 2288092 Query 25196 GCTACATTTAGTGCT 25210 || || | ||||| Sbjct 2288091 CCTCCACCTGGTGCT 2288077 Score = 104 bits (114), Expect = 2e-17 Identities = 140/195 (72%), Gaps = 0/195 (0%) Strand=Plus/Minus Query 25016 GACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCTGACACTATCGAGTCACT 25075 |||| | || || || ||||||| | || |||||||| |||||||| |||||| | Sbjct 2288724 GACTCTCACTGGCAAGACCATCACGCTGGAGGTGGAGTCCTCTGACACCATCGAGAACGT 2288665 Query 25076 GAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAACAGCGGATTATTTTTGC 25135 |||| || ||| ||||| || || || || || ||||| ||||| | || ||||| Sbjct 2288664 GAAGTCCAAGATCCAGGACAAGGAGGGCATCCCCCCGGACCAGCAGCGCCTGATCTTTGC 2288605 Query 25136 CGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAATATTCAAAAAGAATCCAC 25195 |||||| || | || |||| ||||| ||| ||| ||||| || || || || ||||| Sbjct 2288604 CGGCAAGCAGCTGGAGGATGGCCGCACCCTGGCCGACTACAACATCCAGAAGGAGTCCAC 2288545 Query 25196 GCTACATTTAGTGCT 25210 || || | ||||| Sbjct 2288544 CCTCCACCTGGTGCT 2288530 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433327440194390