Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Coccomyxa_20sp._20LA000219_20[genbank_20GCA_5F000812005.1_202015-01- 02] 106 sequences; 48,546,496 total letters Query= NC_008296.2 Length=177300 Score E Sequences producing significant alignments: (Bits) Value seq18 865 0.0 seq17 558 4e-154 >seq18 Length=145863 Score = 865 bits (958), Expect = 0.0 Identities = 785/986 (80%), Gaps = 2/986 (0%) Strand=Plus/Minus Query 166053 CTTCTGCGAATGGGTTACCTCTACCAACAACCGTCTTTATGTTGGTTGGTTTGGCACACT 166112 |||||| ||||||||||| || | ||||| ||||| ||||||||||||| || Sbjct 120632 CTTCTGTGAATGGGTTACTAGCACTGAAAACCGCCTTTACATTGGTTGGTTTGGTGTTCT 120573 Query 166113 GATGATTCCAACTCTGTTGGCAGCAACCATCTGT-TTCATCGTCGCTTTCGTAGCGGCAC 166171 ||||| || ||||| || | ||||| ||||| ||||| |||| || || || |||| Sbjct 120572 AATGATCCCTACTCTTTTAACTGCAACT-TCTGTGTTCATTATCGCATTTGTTGCTGCAC 120514 Query 166172 CTCCTGTCGATATCGATGGGATCCGTGAGCCCGTAGCAGGCTCTCTAATGTATGGTAACA 166231 ||||||| || |||||||| ||||||||||| ||| |||| |||||| | || ||||||| Sbjct 120513 CTCCTGTAGACATCGATGGTATCCGTGAGCCTGTATCAGGTTCTCTACTTTACGGTAACA 120454 Query 166232 ACATCATCTCTGGTGCTGTTGTCCCCTCCTCCAACGCAATTGGTCTTCACTTCTATCCCA 166291 ||||||| |||||||||||||| || | || |||||||||||||| |||||||| || | Sbjct 120453 ACATCATTTCTGGTGCTGTTGTTCCTACATCAAACGCAATTGGTCTGCACTTCTACCCAA 120394 Query 166292 TCTGGGAAGCAGCATCACTTGATGAATGGCTTTATAACGGTGGTCCTTTCCAGCTCGTAG 166351 | |||||||| || |||||||| ||||||||||| ||||||||||||| ||| || | | Sbjct 120393 TTTGGGAAGCTGCTTCACTTGACGAATGGCTTTACAACGGTGGTCCTTACCAACTAATCG 120334 Query 166352 TCTTCCACTTCCTCATCGGCATCTATGCCTACATGGGTCGTGAATGGGAATTGTCTTACC 166411 | | |||||| || | ||||| | ||||||||||||||| |||||| | |||| || Sbjct 120333 TATGTCACTTCTTCCTAGGCATTTGCTGCTACATGGGTCGTGAGTGGGAACTTTCTTTCC 120274 Query 166412 GCCTCGGTATGCGTCCTTGGATTTGCGTAGCATACTCTGCACCTGTTGCAGCAGCATCCG 166471 | | || |||||||| ||||| ||||| ||||||||||| |||||||| || | | Sbjct 120273 GTTTAGGAATGCGTCCATGGATCGCTGTAGCTTACTCTGCACCAGTTGCAGCTGCTACTG 120214 Query 166472 CAGTCTTCCTGGTCTATCCTTTCGGTCAAGGTTCTTTCTCTGACGCAATGCCCCTGGGTA 166531 | || ||| | |||| ||| ||||||||||||| ||||| || | ||||| |||||| Sbjct 120213 CTGTATTCATCATCTACCCTATCGGTCAAGGTTCATTCTCAGATGGTATGCCTTTGGGTA 120154 Query 166532 TCAGTGGCACCTTCAACTACATGCTTGTCTTCCAAGCAGAGCACAACATCCTCATGCACC 166591 | || || ||||||| |||| |||| |||||||| |||||||||||||| ||||||| Sbjct 120153 TTTCAGGAACTTTCAACTTCATGATTGTTTTCCAAGCTGAGCACAACATCCTTATGCACC 120094 Query 166592 CCTTCCATATGCTGGGTGTAGCAGGTGTATTCGGTGGGTCACTTTTCTCGGCAATGCACG 166651 | ||||| ||||| ||||| || ||||| |||||||| ||||||||||| || ||||||| Sbjct 120093 CATTCCACATGCTTGGTGTTGCTGGTGTGTTCGGTGGTTCACTTTTCTCAGCTATGCACG 120034 Query 166652 GCAGTCTCGTTACTTCCTCGCTCGTCCGTGAGACCACTGAAACTGAGTCTCAAAACTATG 166711 | ||| || ||||| || || ||||||| || ||||| | || || |||| || Sbjct 120033 GTTCTCTAGTAACTTCTTCACTTATCCGTGAAACTACTGAGAACGAATCAGCAAACGCTG 119974 Query 166712 GTTACAAGTTTGGTCAAGAAGAAGAGACCTACAACATCGTGGCTGCTCATGGTTACTTCG 166771 ||||||| || |||||||||||||| || |||||||| || ||||| || |||||||| | Sbjct 119973 GTTACAAATTCGGTCAAGAAGAAGAAACTTACAACATTGTTGCTGCACACGGTTACTTTG 119914 Query 166772 GTCGCCTGATCTTCCAATACGCTTCCTTCAACAACTCTCGCTCGCTGCACTTCTTCCTCG 166831 |||| || ||||||||||||||||| |||||||||||||| || || ||||||||||| | Sbjct 119913 GTCGTCTAATCTTCCAATACGCTTCATTCAACAACTCTCGTTCACTTCACTTCTTCCTTG 119854 Query 166832 CAGCATGGCCTGTTGTCGGTATCTGGTTTACTGCTCTTGGTGTTAGCACCATGGCATTCA 166891 | || |||||||| || |||||||||||||||||||||||| | || |||||||||| Sbjct 119853 CTGCTTGGCCTGTAGTTGGTATCTGGTTTACTGCTCTTGGTATCTCTACTATGGCATTCA 119794 Query 166892 ACCTCAACGGTTTCAACTTCAACCAGTCCATCATCGATGGTCAGGGTCGTGTGCTCAACA 166951 |||| ||||| ||||||||||||||||| | | || ||| ||||| || |||||| Sbjct 119793 ACCTTAACGGATTCAACTTCAACCAGTCAGTTGTAGACTCTCAAGGTCGCGTTATCAACA 119734 Query 166952 CTTGGGCAGATGTCCTCAACCGTGCTGGTCTGGGTATGGAAGTAATGCACGAGCGTAATG 167011 |||||| || || |||||||||| || |||||||||||||||||||| | || | Sbjct 119733 CTTGGGGTGACATCATCAACCGTGCCAACCTTGGTATGGAAGTAATGCACGAAAGAAACG 119674 Query 167012 CTCACAACTTCCCTCTGGATCTTGCT 167037 | ||||||||||| || || |||||| Sbjct 119673 CACACAACTTCCCACTAGACCTTGCT 119648 >seq17 Length=88650 Score = 558 bits (618), Expect = 4e-154 Identities = 738/1019 (72%), Gaps = 6/1019 (1%) Strand=Plus/Minus Query 167297 TGGTTTGATGTCCTGGATGACTGGCTTAAACGCGACCGCTTTGTCTTTGTGGGCTGGTCT 167356 |||||||||| | ||||||||| | || || || ||||| || || ||||||||| Sbjct 87630 TGGTTTGATGAAGTAGATGACTGGTTGCGCCGTGAACGATTTGTGTTCGTTGGCTGGTCT 87571 Query 167357 GGATTACTTCTTTTTCCCACTGCTTATCTGGCAATTGGTGGCTGGCTTACTGGCACGACG 167416 || | | || || || || ||||| || ||| | ||||||||| | || || || || Sbjct 87570 GGTCTGTTACTCTTCCCTACAGCTTACCTTGCATTAGGTGGCTGGTTGACAGGAACCACA 87511 Query 167417 TTTGTTACGAGCTGGTATACCCACGGGTTGGCGTCTAGTTACCTTGAGGG-TGCTAATTT 167475 || ||||| ||||| || || || | || | |||| | || || ||| | || Sbjct 87510 TTCGTTACATCTTGGTACACACATGGACTTGCAAGTTCTTACTTAGAAGGATGCAACTTC 87451 Query 167476 TCTCACGGCAGCAGTGTCAACTCCTGCTGACGCTATGGGTCATTC--TCTTCTTCTACTT 167533 | | || ||||| || |||||||| || || |||||||| || | || ||| || Sbjct 87450 T-TAACAGCAGCCGTTTCAACTCCAGCAAACAGCATGGGTCACTCATTGTTGTTC--CTA 87394 Query 167534 TGGGGTCCTGAGTCTCAGGGGGATTTCATCAGGTGGTGCCAGCTTGGGGGACTCTGGGCT 167593 ||||| |||||| | || || || || | | ||||| ||| | || || || |||||| Sbjct 87393 TGGGGGCCTGAGGCACAAGGTGACTTTACTCGCTGGTGTCAGTTGGGTGGTCTGTGGGCT 87334 Query 167594 TTTGTGGCGCTCCACGGAGCCTTTGCTCTCATAGGATTTATGCTTCGGCAATTTGAGATA 167653 || || || | || || |||||||| || || || |||||||| || || ||||| | Sbjct 87333 TTCGTAGCTTTACATGGTGCCTTTGCGCTTATTGGGTTTATGCTACGACAGTTTGAACTT 87274 Query 167654 AGTAGACTAGTAGGTATCCGTCCTTACAATGCGATTGCTTTTTCTGGTCCGATTGCTGTC 167713 ||| ||| | ||||||||||| || ||||| || || | || ||||||||| Sbjct 87273 GCAAGATCGGTAAAGCTTCGTCCTTACAACGCTATTGCCTTCTCAGCACCTATTGCTGTC 87214 Query 167714 TTTGTGTCTGTTTTTCTCATCTATCCTCTCGGACAGTCCAGTTGGTTCTTTGCACCGTCG 167773 || || || || || || ||||||||| | ||||| || | ||||||||||| || Sbjct 87213 TTCGTATCAGTCTTCCTTATCTATCCTTTGGGACAATCAGGCTGGTTCTTTGCGCCTAGC 87154 Query 167774 TTTGGTGTTGCAGCGATATTTAGATTCCTACTATTCCTACAGGGTTTCCATAACTGGACG 167833 |||||||| || || || || |||| | || ||| | || |||||||| ||||||||| Sbjct 87153 TTTGGTGTAGCGGCAATCTTCCGATTTATTCTTTTCTTCCAAGGTTTCCACAACTGGACG 87094 Query 167834 CTCAACCCTTTCCATATGATGGGAGTTGCTGGTATCCTAGGCGGTGCATTGCTTTCTGCA 167893 || ||||||||||| |||||||| || || ||| | ||||| | |||| | || | |||| Sbjct 87093 CTTAACCCTTTCCACATGATGGGTGTGGCAGGTGTTCTAGGTGCTGCACTTCTATGTGCA 87034 Query 167894 ATCCATGGTGTTACAGTAGAGAATACTCTGTATGAAGATGGTGAGCAAGCAAACACTTTC 167953 || || || | ||||||||||| ||||| | |||||||||||| || ||||||||| Sbjct 87033 ATTCACGGAGCAACAGTAGAGAACACTCTTTTTGAAGATGGTGACGGTGCGAACACTTTC 86974 Query 167954 AAAGCATTTGATACGACTCAGGAAGAGGAAACTTATTCCATGGTCACTGCTAACCGATTC 168013 ||||| | | || || | || || || || || ||||| || |||||||| || Sbjct 86973 CGTGCATTCAACCCAACGCAAGCCGAAGAGACATACTCTATGGTAACAGCTAACCGTTTT 86914 Query 168014 TGGTCTCAAATTTTTGGTATTGCTTTCAGCAATAAGCGTTGGTTGCACTTCTTTATGCTT 168073 ||||| ||||| |||||| | |||||| || || |||||| | || |||||||||||| Sbjct 86913 TGGTCACAAATCTTTGGTGTAGCTTTCTCAAACAAACGTTGGCTTCATTTCTTTATGCTT 86854 Query 168074 TTCGTTCCTGTCATGGGACTTTGGACAAGTTCTATTGGTATCATCGGTCTCGCACTTAAT 168133 || || ||||| | || ||||||| ||| | |||||| | ||||| || || ||||| Sbjct 86853 TTTGTCCCTGTAACTGGTCTTTGGATGAGTGCAATTGGTGTTATCGGACTTGCTCTTAAC 86794 Query 168134 CTTCGTGCTTATGACTTTGTGTCTCAGGAAGTTAGAGCAGCAGAGGATCCAGAGTTTGAA 168193 | || || ||||||||||| || || || | | ||||| ||||| || || || || Sbjct 86793 TTACGAGCATATGACTTTGTTTCACAAGAGATCCGTGCAGCTGAGGACCCTGAATTCGAG 86734 Query 168194 ACTTTCTATACGAAAAACATCCTCCTCAATGAAGGACTCCGTGCCTGGATGGCTCCAGTA 168253 |||||||| || |||||||| || || || ||||| | | || |||||||| | Sbjct 86733 ACTTTCTACACAAAAAACATTCTTCTAAACGAAGGTATTAGAGCATGGATGGCGGCTCAG 86674 Query 168254 GACCAACCACATGAAAACTTTGTATTCCCAGAAGAAGTATTGCCAAGAGGCAACGCTCT 168312 ||||| ||||||||||| ||||||||||||| || || || ||| | || |||||||| Sbjct 86673 GACCAGCCACATGAAAAACTTGTATTCCCAGAGGAGGTTTTACCACGTGGAAACGCTCT 86615 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 567231248417600