Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Coccomyxa_20sp._20LA000219_20[genbank_20GCA_5F000812005.1_202015-01- 02] 106 sequences; 48,546,496 total letters Query= NC_008586.1 Length=131204 Score E Sequences producing significant alignments: (Bits) Value seq106 98.7 8e-16 seq100 96.9 3e-15 >seq106 Length=3132237 Score = 98.7 bits (108), Expect = 8e-16 Identities = 147/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 22237 ACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACCGATACCGTGGACGATATC 22296 ||| | || || || || |||| ||||| ||||| | | || ||| | || || || Sbjct 2289122 ACTCTGACTGGCAAGACCATCACCCTTGAGGTGGAGTCTTCTGACACCATCGAAAATGTC 2289063 Query 22297 AAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAACAACGTCTTATATTTGCC 22356 || || || || ||||||||||| ||||| || || || || || || || || ||| Sbjct 2289062 AAGTCCAAGATCCAGGACAAGGAGGGCATTCCCCCAGACCAGCAGCGCCTCATCTTCGCC 2289003 Query 22357 GGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAACATTCAAAAAGAATCCACC 22416 ||||| ||| | |||||| ||||||| | |||| |||||||| || || || || ||| Sbjct 2289002 GGCAAGCAGCTGGAGGATGGCCGCACCCTGGCCGACTACAACATCCAGAAGGAGTCTACC 2288943 Query 22417 ATACATTTAGTTTTGCGATTGCGCGGAGG 22445 | || | || |||| |||| || || Sbjct 2288942 CTCCACCTGGTGCTGCGCCTGCGTGGTGG 2288914 Score = 93.3 bits (102), Expect = 4e-14 Identities = 146/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 22237 ACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACCGATACCGTGGACGATATC 22296 ||| | || || || || |||| || || ||||| || | || ||| | || | | Sbjct 2288723 ACTCTCACTGGCAAGACCATCACGCTGGAGGTGGAGTCCTCTGACACCATCGAGAACGTG 2288664 Query 22297 AAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAACAACGTCTTATATTTGCC 22356 || || || || ||||||||||| || || || || || || || || || |||||| Sbjct 2288663 AAGTCCAAGATCCAGGACAAGGAGGGCATCCCCCCGGACCAGCAGCGCCTGATCTTTGCC 2288604 Query 22357 GGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAACATTCAAAAAGAATCCACC 22416 ||||| ||| | |||||| ||||||| | |||| |||||||| || || || |||||| Sbjct 2288603 GGCAAGCAGCTGGAGGATGGCCGCACCCTGGCCGACTACAACATCCAGAAGGAGTCCACC 2288544 Query 22417 ATACATTTAGTTTTGCGATTGCGCGGAGG 22445 | || | || |||| |||| || || Sbjct 2288543 CTCCACCTGGTGCTGCGCCTGCGTGGTGG 2288515 Score = 89.7 bits (98), Expect = 4e-13 Identities = 145/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 22237 ACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACCGATACCGTGGACGATATC 22296 ||| | || || || || |||| || || ||||| || | || ||| | || | | Sbjct 2288270 ACTCTGACTGGCAAGACCATCACGCTGGAGGTGGAGTCCTCTGACACCATCGAGAACGTG 2288211 Query 22297 AAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAACAACGTCTTATATTTGCC 22356 || || || || ||||||||||| || || || || || || || || || |||||| Sbjct 2288210 AAGTCCAAGATCCAGGACAAGGAGGGCATCCCCCCGGACCAGCAGCGCCTGATCTTTGCC 2288151 Query 22357 GGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAACATTCAAAAAGAATCCACC 22416 ||||| ||| | |||||| ||||||| | | || |||||||| || || || |||||| Sbjct 2288150 GGCAAGCAGCTGGAGGATGGCCGCACCCTGGCAGACTACAACATCCAGAAGGAGTCCACC 2288091 Query 22417 ATACATTTAGTTTTGCGATTGCGCGGAGG 22445 | || | || |||| |||| || || Sbjct 2288090 CTCCACCTGGTGCTGCGCCTGCGTGGTGG 2288062 >seq100 Length=2336451 Score = 96.9 bits (106), Expect = 3e-15 Identities = 107/143 (75%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 22303 AAAATTCAAGACAAGGAGGGTATTCCACCCGATCAACAACGTCTTATATTTGCCGGCAAA 22362 || || || ||||||||||| || || || || || || ||||| || ||||||||||| Sbjct 980676 AAGATCCAGGACAAGGAGGGCATCCCTCCGGACCAGCAGCGTCTGATCTTTGCCGGCAAG 980735 Query 22363 CAGTTAGAGGATCACCGCACCGTCTCCGATTACAACATTCAAAAAGAATCCACCATACAT 22422 ||| | |||||| |||||| | |||| |||||||| || || || |||||| | || Sbjct 980736 CAGCTGGAGGATGGCCGCACACTGGCCGACTACAACATCCAGAAGGAGTCCACCCTCCAC 980795 Query 22423 TTAGTTTTGCGATTGCGCGGAGG 22445 | || |||| |||| ||||| Sbjct 980796 CTGGTGCTGCGCCTGCGTGGAGG 980818 Score = 96.9 bits (106), Expect = 3e-15 Identities = 158/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 22218 GATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCAC 22277 |||||| ||||| | ||| | || || || || |||| || || ||||| || | Sbjct 980993 GATGCATTTTTTTTGCAGGACTCTCACTGGCAAGACCATCACACTGGAGGTGGAGTCCTC 981052 Query 22278 CGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCA 22337 || ||| | || | | || || || || ||||||||||| ||||| || || || Sbjct 981053 TGACACCATCGAGAACGTGAAGAGCAAGATCCAGGACAAGGAGGGCATTCCTCCGGACCA 981112 Query 22338 ACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAA 22397 || || || || ||||||||||| ||| | |||||| |||||| | |||| ||||| Sbjct 981113 GCAGCGCCTGATCTTTGCCGGCAAGCAGCTGGAGGATGGCCGCACGCTGGCCGACTACAA 981172 Query 22398 CATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGG 22445 ||| || || || |||||| | || | || |||| |||| || || Sbjct 981173 CATCCAGAAGGAGTCCACCCTCCACCTGGTGCTGCGTCTGCGTGGTGG 981220 Score = 91.5 bits (100), Expect = 1e-13 Identities = 142/203 (70%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 22243 ACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACCGATACCGTGGACGATATCAAACAA 22302 || || || || |||| || || ||||| || | || ||| | || || | || Sbjct 981425 ACTGGCAAGACCATCACCCTGGAGGTGGAGTCCTCTGACACCATCGAGAATGTGAAGAGC 981484 Query 22303 AAAATTCAAGACAAGGAGGGTATTCCACCCGATCAACAACGTCTTATATTTGCCGGCAAA 22362 || || || ||||||||||| || || || || || || || || || ||||||||||| Sbjct 981485 AAGATCCAGGACAAGGAGGGAATCCCTCCGGACCAGCAGCGCCTGATCTTTGCCGGCAAG 981544 Query 22363 CAGTTAGAGGATCACCGCACCGTCTCCGATTACAACATTCAAAAAGAATCCACCATACAT 22422 ||| | |||||| |||||| | |||| |||||||| || || || |||||| | || Sbjct 981545 CAGCTGGAGGATGGCCGCACGCTGGCCGACTACAACATCCAGAAGGAGTCCACCCTCCAC 981604 Query 22423 TTAGTTTTGCGATTGCGCGGAGG 22445 | || |||| |||| || || Sbjct 981605 CTGGTGCTGCGTCTGCGTGGTGG 981627 Score = 82.4 bits (90), Expect = 6e-11 Identities = 104/143 (73%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 22303 AAAATTCAAGACAAGGAGGGTATTCCACCCGATCAACAACGTCTTATATTTGCCGGCAAA 22362 || || || ||||||||||| || || || || || || || || || ||||||||||| Sbjct 981891 AAGATCCAGGACAAGGAGGGAATCCCCCCGGACCAGCAGCGCCTGATCTTTGCCGGCAAG 981950 Query 22363 CAGTTAGAGGATCACCGCACCGTCTCCGATTACAACATTCAAAAAGAATCCACCATACAT 22422 ||| | ||||| |||||| | |||| |||||||| || || || |||||| | || Sbjct 981951 CAGCTGGAGGACGGCCGCACGCTGGCCGACTACAACATCCAGAAGGAGTCCACCCTCCAC 982010 Query 22423 TTAGTTTTGCGATTGCGCGGAGG 22445 | || |||| |||| || || Sbjct 982011 CTGGTGCTGCGCCTGCGTGGTGG 982033 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 419727457763890