Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Coccomyxa_20sp._20LA000219_20[genbank_20GCA_5F000812005.1_202015-01- 02] 106 sequences; 48,546,496 total letters Query= NC_008603.1 Length=321240 Score E Sequences producing significant alignments: (Bits) Value seq87 127 4e-24 seq99 96.9 7e-15 seq106 86.0 1e-11 seq93 86.0 1e-11 >seq87 Length=36794 Score = 127 bits (140), Expect = 4e-24 Identities = 153/203 (75%), Gaps = 5/203 (2%) Strand=Plus/Plus Query 182064 GGTGAGGGACAGAGTGGCGTTATCAATGCGAGAGAAGTTGCATGTGCCGGAGGGCTGGCG 182123 ||| ||| ||| |||||||| || ||||| ||||||||||| || |||||||||||| | Sbjct 17222 GGTCAGGTTCAGGGTGGCGTTGTCGATGCGGGAGAAGTTGCAGGTTCCGGAGGGCTGGTG 17281 Query 182124 ACCGGCGGGCTTGAGTGCGAAGGAGTACAGATACACACCGGAGGGAGCCAGGGA-GCCG- 182181 | ||||||||||| |||||||||||| | | || ||| | |||| | | Sbjct 17282 CTCCTCGGGCTTGAGTCCGAAGGAGTACACGTTGATGCC-CTTGGACCTGGGGATGTTGG 17340 Query 182182 -ATGGT-CTGGAAAGGCTGGACCTGGTTGAAGTAAGAGCCCTTGCGAGCGGCGAAACGGT 182239 |||| |||| | ||||| ||| |||||||||| |||||| || || |||| | || Sbjct 17341 TGTGGTGCTGGTAGGGCTGCACCAGGTTGAAGTACGAGCCCAGACGCTCGTCGAACCTGT 17400 Query 182240 CCTGGCCGTTCAGCTGCAGCTTG 182262 | |||||||| |||||||||||| Sbjct 17401 CGTGGCCGTTGAGCTGCAGCTTG 17423 Score = 127 bits (140), Expect = 4e-24 Identities = 97/115 (84%), Gaps = 0/115 (0%) Strand=Plus/Plus Query 182471 GGGTGGCGGTCTCGGAGCCGGTGAACTGCAGCTGCTCGATCAGGTACTCGTGGGGCAGCT 182530 ||| | ||| |||| |||||||||||||||||||||||||||||||||||||| | || Sbjct 17575 GGGAGACGGACTCGCCGCCGGTGAACTGCAGCTGCTCGATCAGGTACTCGTGGGAGACCT 17634 Query 182531 GGGCGAAGCGGGTGCGCTCCTGGGTGTCCAGGAAGATGTAGTCGACCCACACGCT 182585 ||||||| | | |||||| | |||||||||| ||| |||||| ||||||| ||| Sbjct 17635 GGGCGAACCTGCGGCGCTCGTCGGTGTCCAGGTAGACGTAGTCCACCCACAGGCT 17689 >seq99 Length=2590953 Score = 96.9 bits (106), Expect = 7e-15 Identities = 65/73 (89%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 ||| ||| |||||||||||||||||||| || ||||||| || ||||||||||||||||| Sbjct 1949062 AGCTCGGGTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 1949121 Query 142563 CCCCACATCGGGC 142575 |||||| ||| || Sbjct 1949122 CCCCACCTCGAGC 1949134 >seq106 Length=3132237 Score = 86.0 bits (94), Expect = 1e-11 Identities = 107/147 (73%), Gaps = 0/147 (0%) Strand=Plus/Plus Query 251844 GTGCAGACCCTCGTCGCGACTGATGAACTCGTTGGACAGACCCAGGCCAGGCATCACCCC 251903 |||||| ||||||||||| ||||| ||||||||| | ||||| ||||| | | Sbjct 1547902 GTGCAGGCCCTCGTCGCGCGAGATGAGCTCGTTGGAGAAGGTGAGGCCGGGCATGAGCAG 1547961 Query 251904 ACGGTTCCTGAGCCAGAAGATTGCGCAAAAGGATCCAGAGAACAGCAGACCCTCGACACA 251963 || ||| ||||||||||||| ||||| ||||| || ||| | | ||||| || || Sbjct 1547962 GCGCTTCTTGAGCCAGAAGATGGCGCAGAAGGAGCCGCTGAAGTGGATGCCCTCCACGCA 1548021 Query 251964 CACCCATGCAACAAGGCGCTCAGCAAA 251990 | | || || |||||||| ||||| Sbjct 1548022 GGCGAACGCCACCAGGCGCTCCGCAAA 1548048 >seq93 Length=1853137 Score = 86.0 bits (94), Expect = 1e-11 Identities = 100/135 (74%), Gaps = 0/135 (0%) Strand=Plus/Plus Query 280179 GGACCCAATGGTGCGGGTAAGTCTACCCTAATCAAAGTCCTGACTGGCGAGACCCAGGCC 280238 || ||||||||||| || ||||| ||| | ||||| || || || || ||| || || Sbjct 1283853 GGCCCCAATGGTGCTGGCAAGTCCACCATGATCAAGGTGCTCACCGGTGAGCTGGAGCCC 1283912 Query 280239 ACTGAGGGGTCCGTTTGGAAGCATCCCAACATGCGGATGGCTTACGTCGCTCAGCACGCT 280298 | | || |||| ||| || ||||||||||| | || ||||| || |||||||| Sbjct 1283913 TCCTACGGAACCGTGTGGCGCCACCCCAACATGCGCGTCGCCTACGTGGCGCAGCACGCC 1283972 Query 280299 TTCCACCACATCGAG 280313 ||||||||||| ||| Sbjct 1283973 TTCCACCACATTGAG 1283987 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1027835404069146