Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Coccomyxa_20sp._20LA000219_20[genbank_20GCA_5F000812005.1_202015-01- 02] 106 sequences; 48,546,496 total letters Query= NC_009127.1 Length=295146 Score E Sequences producing significant alignments: (Bits) Value seq20 197 3e-45 seq57 154 3e-32 seq106 140 6e-28 seq2 118 2e-21 seq102 113 9e-20 >seq20 Length=132363 Score = 197 bits (218), Expect = 3e-45 Identities = 516/775 (67%), Gaps = 28/775 (4%) Strand=Plus/Plus Query 42284 GATCGAGCACCAGGACATCTGGTCCATGTACAAGAAGGCGCAGTTCTCCAACTGGACCGC 42343 |||| || ||| |||||||||| || ||||||| || || | | |||||||| Sbjct 119124 GATCCAGTACCCGGACATCTGGGAGATCTACAAGAGAGCCGTGTCCGCGTTCTGGACCGT 119183 Query 42344 CGAGGAGATTGACCTGGCCAAGGAC-ACGGCC--GGCTGGGAGTCACTGTCTGA----GA 42396 ||| ||||| || || |||| | ||| | | ||||||| ||| | |||| || Sbjct 119184 CGACGAGATCGATCT---CAAGAGCGACGTCGATGACTGGGAG-CACCGCCTGACGGAGA 119239 Query 42397 ACGAAAAGTTTTTCCTCAAAAACATACTGGCCTTCTTCGCCGCCTCTGACGGCATAGTCA 42456 |||| ||| |||| ||||| |||||||||||||| || || ||| ||| |||| Sbjct 119240 ACGAGCGCACGTTCATCAAGAACATCCTGGCCTTCTTCGCGGCTTCGGACTTCATCGTCA 119299 Query 42457 ATGAGAACCTGGCCACCAGGTTCATGAAAGAGGTGCAGTACTTTGAGGCGCGCTGCTTCT 42516 | ||||||||| | |||||||| ||||| || | ||||||| || |||| Sbjct 119300 ACGAGAACCTGATGGATCGCTTCATGAACGAGGTCAAGGTCCCCGAGGCGCAGTGTTTCT 119359 Query 42517 ACGGCTTCCAGATAGCCATAGAGAACGTGCACTCTGAGGTGTACGCCAAACTGCTCAACA 42576 ||| |||||| ||||||||| | ||| || || || ||| || ||| Sbjct 119360 ACGCGTTCCAGGCGGCCATAGAGTCGCTACACAGCGAAAGCTATTCCTTACTCCTGGACA 119419 Query 42577 CGTACATCCTGGATCCCGTCG---AGCGTAACGGGCTGTTCAAGGCCATGGAGACGATGC 42633 | | ||||| ||| |||| | |||| ||| ||| || || ||||||| || | Sbjct 119420 CCTTCATCCGGGACCCCGCTGAGAAGCGCCACGCCCTG---AACGCAGTGGAGACCATCC 119476 Query 42634 CCTGCATCAAGAAGAAGGCGGACTGGGCGCTCAACTGGATCGAGAGTCCCGACGCAACGT 42693 | ||||||||||||||||| | ||||||| || ||||||| | |||| | |||| Sbjct 119477 CATGCATCAAGAAGAAGGCCGCGTGGGCGCAGAAGTGGATCGCCGACCGCGACTCCACGT 119536 Query 42694 TCGGCGAGAGGCTGGTAGCCTTTACCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTTCG 42753 ||| | || | ||||| ||| || ||| |||||| || | ||||||||| ||| Sbjct 119537 TCGCCAAGCGCCTGGTCTGCTTCGCCATCGTGGAGGGCGTCATGTTCTCGGGCAGTTTCT 119596 Query 42754 CCTCCATCTTCTGGCT---CAAGCAGAAGGTGTCGATGCCCGGACTCACCTTCTCGAACG 42810 | | ||| |||||| ||||| || | || ||| || ||||| ||||| ||| Sbjct 119597 GCGCGCTCTACTGGCTCCGCAAGCGCAA--TCTC-ATGAAGGGCCTCACGTTCTCCAACT 119653 Query 42811 AACTCATCAGC-AGGGACGAGGGGCTGCATAGGGACTTTGCCTGCCTCCTGTTCTCGAGC 42869 ||||| ||| | |||||||| ||||| | || |||||| |||||| ||| Sbjct 119654 CCCTCAT-AGCGCGCGACGAGGGCCTGCACACCGAGCACGCCTGCATCCTGTACTC---T 119709 Query 42870 CACCTCAGGCACAAGCCCTCGAAGGAGCGGGTCCGGGCCATCATCACGGAGGCCGTGGAG 42929 ||| || |||| | | | ||| | ||| |||||| |||||| || | Sbjct 119710 CACGTCGTCAACAAACTGACCGACGAGGAGATCCACCGCATCATGGAGGAGGCTGTCGCC 119769 Query 42930 ATCGAGAAGGAGTTCCTCACGCAGTCGCTGCCCGTGTCCCTGGTCGGCATGAACCACGAC 42989 ||||||| |||||| || || | ||| || || ||||||||||| | | Sbjct 119770 ATCGAGACCGAGTTCATCTGCTCCTCCATTCCCTGCGCCATGCTCGGCATGAACTCCAAA 119829 Query 42990 CTCATGTGCAAGTACATCCAGTACGTCGCCGACCATCTCCTGTGCCAGATGGGTC 43044 | ||| || | | ||||| | ||||||||||| ||||| |||| | |||| Sbjct 119830 CAGATGAGCGAATTCATCCGATTCGTCGCCGACCGCCTCCTCCTCCAGCTCGGTC 119884 Score = 197 bits (218), Expect = 3e-45 Identities = 516/775 (67%), Gaps = 28/775 (4%) Strand=Plus/Plus Query 42284 GATCGAGCACCAGGACATCTGGTCCATGTACAAGAAGGCGCAGTTCTCCAACTGGACCGC 42343 |||| || ||| |||||||||| || ||||||| || || | | |||||||| Sbjct 121036 GATCCAGTACCCGGACATCTGGGAGATCTACAAGAGAGCCGTGTCCGCGTTCTGGACCGT 121095 Query 42344 CGAGGAGATTGACCTGGCCAAGGAC-ACGGCC--GGCTGGGAGTCACTGTCTGA----GA 42396 ||| ||||| || || |||| | ||| | | ||||||| ||| | |||| || Sbjct 121096 CGACGAGATCGATCT---CAAGAGCGACGTCGATGACTGGGAG-CACCGCCTGACGGAGA 121151 Query 42397 ACGAAAAGTTTTTCCTCAAAAACATACTGGCCTTCTTCGCCGCCTCTGACGGCATAGTCA 42456 |||| ||| |||| ||||| |||||||||||||| || || ||| ||| |||| Sbjct 121152 ACGAGCGCACGTTCATCAAGAACATCCTGGCCTTCTTCGCGGCTTCGGACTTCATCGTCA 121211 Query 42457 ATGAGAACCTGGCCACCAGGTTCATGAAAGAGGTGCAGTACTTTGAGGCGCGCTGCTTCT 42516 | ||||||||| | |||||||| ||||| || | ||||||| || |||| Sbjct 121212 ACGAGAACCTGATGGATCGCTTCATGAACGAGGTCAAGGTCCCCGAGGCGCAGTGTTTCT 121271 Query 42517 ACGGCTTCCAGATAGCCATAGAGAACGTGCACTCTGAGGTGTACGCCAAACTGCTCAACA 42576 ||| |||||| ||||||||| | ||| || || || ||| || ||| Sbjct 121272 ACGCGTTCCAGGCGGCCATAGAGTCGCTACACAGCGAAAGCTATTCCTTACTCCTGGACA 121331 Query 42577 CGTACATCCTGGATCCCGTCG---AGCGTAACGGGCTGTTCAAGGCCATGGAGACGATGC 42633 | | ||||| ||| |||| | |||| ||| ||| || || ||||||| || | Sbjct 121332 CCTTCATCCGGGACCCCGCTGAGAAGCGCCACGCCCTG---AACGCAGTGGAGACCATCC 121388 Query 42634 CCTGCATCAAGAAGAAGGCGGACTGGGCGCTCAACTGGATCGAGAGTCCCGACGCAACGT 42693 | ||||||||||||||||| | ||||||| || ||||||| | |||| | |||| Sbjct 121389 CATGCATCAAGAAGAAGGCCGCGTGGGCGCAGAAGTGGATCGCCGACCGCGACTCCACGT 121448 Query 42694 TCGGCGAGAGGCTGGTAGCCTTTACCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTTCG 42753 ||| | || | ||||| ||| || ||| |||||| || | ||||||||| ||| Sbjct 121449 TCGCCAAGCGCCTGGTCTGCTTCGCCATCGTGGAGGGCGTCATGTTCTCGGGCAGTTTCT 121508 Query 42754 CCTCCATCTTCTGGCT---CAAGCAGAAGGTGTCGATGCCCGGACTCACCTTCTCGAACG 42810 | | ||| |||||| ||||| || | || ||| || ||||| ||||| ||| Sbjct 121509 GCGCGCTCTACTGGCTCCGCAAGCGCAA--TCTC-ATGAAGGGCCTCACGTTCTCCAACT 121565 Query 42811 AACTCATCAGC-AGGGACGAGGGGCTGCATAGGGACTTTGCCTGCCTCCTGTTCTCGAGC 42869 ||||| ||| | |||||||| ||||| | || |||||| |||||| ||| Sbjct 121566 CCCTCAT-AGCGCGCGACGAGGGCCTGCACACCGAGCACGCCTGCATCCTGTACTC---T 121621 Query 42870 CACCTCAGGCACAAGCCCTCGAAGGAGCGGGTCCGGGCCATCATCACGGAGGCCGTGGAG 42929 ||| || |||| | | | ||| | ||| |||||| |||||| || | Sbjct 121622 CACGTCGTCAACAAACTGACCGACGAGGAGATCCACCGCATCATGGAGGAGGCTGTCGCC 121681 Query 42930 ATCGAGAAGGAGTTCCTCACGCAGTCGCTGCCCGTGTCCCTGGTCGGCATGAACCACGAC 42989 ||||||| |||||| || || | ||| || || ||||||||||| | | Sbjct 121682 ATCGAGACCGAGTTCATCTGCTCCTCCATTCCCTGCGCCATGCTCGGCATGAACTCCAAA 121741 Query 42990 CTCATGTGCAAGTACATCCAGTACGTCGCCGACCATCTCCTGTGCCAGATGGGTC 43044 | ||| || | | ||||| | ||||||||||| ||||| |||| | |||| Sbjct 121742 CAGATGAGCGAATTCATCCGATTCGTCGCCGACCGCCTCCTCCTCCAGCTCGGTC 121796 >seq57 Length=1368 Score = 154 bits (170), Expect = 3e-32 Identities = 515/776 (66%), Gaps = 68/776 (9%) Strand=Plus/Plus Query 244391 TCGAGGGCGGCGTAGTAGATGGTCTCGAAGATCATCTTG-TTCATGTCGCGGGCCTTGCC 244449 || || || |||| ||| ||||||||| ||| ||| | |||| | |||| ||| Sbjct 590 TCCAGAGCAGCGTGGTACATGGTCTCGGCGATG-TCTCGATTCAGCT-----GCCTCGCC 643 Query 244450 GCAGGT-----GAAGGGGATGCCCATCATCATGAAGAC---GTCGGCCAGTCCCTGCACG 244501 |||| ||||||| |||| ||| ||| ||| ||| || || ||||| || Sbjct 644 TCAGGGCTCTCGAAGGGG-TGCC--TCAGGATGCAGAACGTGTCAGCAAGCCCCTGAACC 700 Query 244502 CCGATGCCGATGGGTCTGTGTCGCTTGTTGGAGCGCATGGCTTCGGGCACGGGGTAAAAG 244561 |||||||| | |||| || || | |||||| || || |||||| || || | Sbjct 701 CCGATGCCCACCGGTCGATGGCGTCTATTGGAGAGCTCTGCCTCGGGCGTCGGATAGTAA 760 Query 244562 TTGCCGTCGATCACCTTGTTGAGGTTGCGGGTGATCATGCGGACGACGTCGGCCAGCAGC 244621 ||| ||||||||||||||| |||||||| || || | |||| | |||| | Sbjct 761 TTGATGTCGATCACCTTGTTCAGGTTGCGCATGGCCACCTTGGTCACGTTGTGCAGCCCC 820 Query 244622 TGAAAGTCGTA-CTCGTAGGGATCCTCGGCGATGGTGATCCTCACAAAC-TCGTTGAGGG 244679 | |||||| | ||| | |||||||| |||| | || ||| |||| Sbjct 821 TCGAAGTCGAAGCTCCAA----TCCTCGGC---------CCTCGCGAATGTCGGC-AGGG 866 Query 244680 CGAC---GCTGGCCAGGTTGCAGACGGCCACCTCCTCCGAGTTGGTGTACTGGACAATCT 244736 ||| |||| |||||||| || ||| ||| | | | | | |||||| | ||||| Sbjct 867 CGATCGAGCTG---AGGTTGCACACCGCCGTCTCTGCGGGGCTCGAGTACTGCAGAATCT 923 Query 244737 CGGTGCAGAGGTTACTGCACTTGATGGTGCCCAGGT-GCTGGTGATTGGACTTGGCGTTG 244795 | |||| || || || |||||| |||| || ||| || |||||||| |||| Sbjct 924 CACTGCACAGATTGGAGCTGCGGATGGTCCCCAAGTTGCTC-TGGTTGGACTTCCGGTTG 982 Query 244796 CAGGCGTCCTTGTAGAGCATGAAGGGCCCCCCGGTCTCGAGCTGGGCGACGAGGA-CGCT 244854 ||||| |||||| |||||| | | || ||||||||||| ||| | ||| |||| ||| Sbjct 983 CAGGCATCCTTGAAGAGCAGGTACGGTGTCCCGGTCTCGATCTGCGAGACCAGGATCGC- 1041 Query 244855 GTTCCAGAG-GTCCCTAGCCTTGACCGTCCTGCGAGC---CTTGCCCTCTGCCTCGTAGC 244910 |||||| || |||| | || | ||| | |||| | | | | | |||||||| | Sbjct 1042 GTTCCACAGCGTCCGT-GCGTCGAC---CTGGCGAACCCACCTACTCGACGCCTCGTAAC 1097 Query 244911 GGGTGTACAGGGCCTCGAACTCGGGGCCCCAGACCTCGTC---TAGGCCGGGGCACGACG 244967 |||||| || ||| || | ||| ||| |||| || ||||| |||| || Sbjct 1098 CCTCGTACAGCAGCTTGAAGTCCTGCCCC---ACCGCGTCAGGGAGCCCGGGACACG-CG 1153 Query 244968 C-CGGGCACATGAGACTCCACTCGCCGCCGTCCTTGACCCTCTGCATGAAGAGGTCGGGG 245026 | ||| ||| || ||||| | || || || | || |||||||||||| || Sbjct 1154 CTGGGGTCCATCAGGCTCCATTGAGTCCCTGACTGCACGCGCTCCATGAAGAGGTCCGGT 1213 Query 245027 ATCCAGAGGGCCTGGAAGAGGTCCCTGG---TCCTCTGCTCGTCCGAGCCAGTG-TTCTT 245082 | ||| | ||| | |||||| || | | ||||| |||||| | ||| ||||| Sbjct 1214 ACCCACATGGCGTAGAAGAGATCGCGCGCCCGCCTCTCCTCGTC----ACCGTGATTCTT 1269 Query 245083 CCTCAGCTCCAAAAAGTCAAAGACGTCGACGTGCCAGGGCTCCATGTAGACAGCGA 245138 | | || |||| ||||| |||||||| ||||||| ||||| ||||||| |||| Sbjct 1270 CTTGAGGTCCAGGAAGTCGAAGACGTCTGCGTGCCATGGCTCGATGTAGATTGCGA 1325 >seq106 Length=3132237 Score = 140 bits (154), Expect = 6e-28 Identities = 180/246 (73%), Gaps = 3/246 (1%) Strand=Plus/Minus Query 42616 AGGCCATGGAGACGATGCCCTGCATCAAGAAGAAGGCGGACTGGGCGCTCAACTGGATCG 42675 |||||| ||||| |||| ||| | ||||||||| | ||||||| ||||||||| Sbjct 1548122 AGGCCACCCAGACGCTGCCATGCGTGGCCAAGAAGGCGCAGTGGGCGCAGCACTGGATCG 1548063 Query 42676 AGAGTCCCGACGCAACGTTCGGCGAGAGGCTGGTAGCCTTTACCGCCGTCGAGGGCATCT 42735 || || ||| | || | ||| | ||||| || || || ||| ||||||||| Sbjct 1548062 GCAGCGCCA--GCAGCTTTGCG-GAGCGCCTGGTGGCGTTCGCCTGCGTGGAGGGCATCC 1548006 Query 42736 TCTTCTCGGGCGCCTTCGCCTCCATCTTCTGGCTCAAGCAGAAGGTGTCGATGCCCGGAC 42795 |||| ||| ||||| | ||||||||||||||||| || || |||||||| | Sbjct 1548005 ACTTCAGCGGCTCCTTCTGCGCCATCTTCTGGCTCAAGAAGCGCCTGCTCATGCCCGGCC 1547946 Query 42796 TCACCTTCTCGAACGAACTCATCAGCAGGGACGAGGGGCTGCATAGGGACTTTGCCTGCC 42855 |||||||||| ||||| |||||| | |||||||| ||||| | ||||| ||||||| Sbjct 1547945 TCACCTTCTCCAACGAGCTCATCTCGCGCGACGAGGGCCTGCACACCGACTTCGCCTGCC 1547886 Query 42856 TCCTGT 42861 |||||| Sbjct 1547885 TCCTGT 1547880 Score = 107 bits (118), Expect = 4e-18 Identities = 136/182 (75%), Gaps = 4/182 (2%) Strand=Plus/Minus Query 42918 GAGGCCGTGGAGATCGAGAAGGAGTTCCTCACGCAGT-CGCTGCCCGTGTCCCTGGTCGG 42976 ||||| |||||| | ||| | |||||| | |||| ||||||| ||||| ||||| || Sbjct 1547505 GAGGCGGTGGAGCTGGAGCACGAGTTCTGCT-GCAGCGCGCTGCCGGTGTCGCTGGTGGG 1547447 Query 42977 CATGAACCACGACCTCATGTGCAAGTACATCCAGTACGTCGCCGACCATCTCCTGTGCCA 43036 ||||||| | ||||||| | |||||||| ||||||| ||||||| || ||| | Sbjct 1547446 CATGAACGCGGGCCTCATGGGGCAGTACATCGAGTACGTGGCCGACCGCCTGCTGGTGGA 1547387 Query 43037 GATGG-GTCTCAGCCGCCTCTACAACACGCCGTGCCCCTTCGACTTTATGGAGAACATCT 43095 | | || ||| |||| ||||||||||| ||||||||||| ||||||| |||| Sbjct 1547386 GCTCCAGTGCGAGC-GCCTGTACAACACGCCCAACCCCTTCGACTGGATGGAGATGATCT 1547328 Query 43096 CG 43097 || Sbjct 1547327 CG 1547326 >seq2 Length=534433 Score = 118 bits (130), Expect = 2e-21 Identities = 103/127 (81%), Gaps = 2/127 (2%) Strand=Plus/Minus Query 244721 GTGTACTGGACAATCTCGGTGCAGAGGTTACTGCACTTGATGGTGCCCAGGTGCTGGTGA 244780 ||||||| |||||||| |||||||| || |||||||||||||||||||| | ||| ||| Sbjct 280764 GTGTACTCCACAATCTCAGTGCAGAGATTGCTGCACTTGATGGTGCCCAGATTCTGCTGA 280705 Query 244781 TTGGACTTGGCGTTGCAGGCGTCCTTGTAGAGCATGAAGGGCCCCCCGGTCTCGAGCTG- 244839 || ||||| |||||||| |||||||||||||||| | || || ||||| | ||| Sbjct 280704 TTTGACTTCCTGTTGCAGGAGTCCTTGTAGAGCATGTATGGGTTGCCTGTCTCAACCTGC 280645 Query 244840 -GGCGAC 244845 |||||| Sbjct 280644 AGGCGAC 280638 >seq102 Length=2901463 Score = 113 bits (124), Expect = 9e-20 Identities = 128/169 (76%), Gaps = 2/169 (1%) Strand=Plus/Plus Query 42699 GAGAGGCTGGTAGCCTTTACCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCCTCC 42758 ||| ||||||| || | || ||| ||||||||||||||| ||| |||| | | Sbjct 1633630 GAGCGGCTGGTGGCGTGGGCCTGCGTGGAGGGCATCTTCTTCAGCGGCAGCTTCTGCAGC 1633689 Query 42759 ATCTTCTGGCTCAAGCAG-AAGGTGTCGATGCCCGGACTCACCTTCTCGAACGAACTCAT 42817 |||||||||||||| || || || |||| ||| ||||||||||| ||||| ||||| Sbjct 1633690 GTCTTCTGGCTCAAGAAGCGCGGCCTC-ATGCACGGCCTCACCTTCTCCAACGAGCTCAT 1633748 Query 42818 CAGCAGGGACGAGGGGCTGCATAGGGACTTTGCCTGCCTCCTGTTCTCG 42866 | | | |||||||| || || | ||||| ||||||||||||| |||| Sbjct 1633749 CTCCCGCGACGAGGGCCTCCACTGCGACTTCGCCTGCCTCCTGTACTCG 1633797 Score = 102 bits (112), Expect = 2e-16 Identities = 97/124 (78%), Gaps = 0/124 (0%) Strand=Plus/Plus Query 42908 CATCATCACGGAGGCCGTGGAGATCGAGAAGGAGTTCCTCACGCAGTCGCTGCCCGTGTC 42967 |||||||| ||||| || || |||||||||||||| || || ||||||||||| Sbjct 1634115 CATCATCATCGAGGCGGTTGACATCGAGAAGGAGTTTCTGTGCGAGGCGCTGCCCGTGGG 1634174 Query 42968 CCTGGTCGGCATGAACCACGACCTCATGTGCAAGTACATCCAGTACGTCGCCGACCATCT 43027 |||| ||||||||||| | ||||||||| || |||||||| | | || ||||||| || Sbjct 1634175 CCTGATCGGCATGAACAAGGACCTCATGAGCCAGTACATCGACTTTGTGGCCGACCGCCT 1634234 Query 43028 CCTG 43031 ||| Sbjct 1634235 GCTG 1634238 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 944337948750560