Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Coccomyxa_20sp._20LA000219_20[genbank_20GCA_5F000812005.1_202015-01- 02] 106 sequences; 48,546,496 total letters Query= NC_009898.1 Length=368683 Score E Sequences producing significant alignments: (Bits) Value seq100 89.7 1e-12 seq33 84.2 5e-11 >seq100 Length=2336451 Score = 89.7 bits (98), Expect = 1e-12 Identities = 128/178 (72%), Gaps = 2/178 (1%) Strand=Plus/Minus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 || || ||||| || |||||||| || ||||| || || || | || || || || ||| Sbjct 980782 TCCTTCTGGATGTTGTAGTCGGCCAGTGTGCGGCCATCCTCCAGCTGCTTGCCGGCAAAG 980723 Query 288343 ATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCT-TTCACGTT 288401 ||||||||||| || ||||| || || || |||||||| || ||| |||||||| Sbjct 980722 ATCAGACGCTGCTGGTCCGGAGGGATGCCCTCCTTGTCCTGGATCTT-GCTCTTCACGTT 980664 Query 288402 TTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTG 288459 || || | || || || || || || ||||| ||||| || ||||| ||| || Sbjct 980663 CTCGATGGTGTCAGAGGACTCCACCTCCAGTGTGATGGTCTTGCCAGTCAGGGTCCTG 980606 >seq33 Length=59379 Score = 84.2 bits (92), Expect = 5e-11 Identities = 79/101 (78%), Gaps = 0/101 (0%) Strand=Plus/Plus Query 247062 TCGATGGCGAAGTTGGTGTAACGACGGTACACGGTCTTGAAGAAGGTGATTTGGGGGTTG 247121 ||||||||||| || ||||| | ||||||||| ||| | | ||||| |||||||| Sbjct 8619 TCGATGGCGAAATTCGTGTACCTGCGGTACACGAGCTTCCACCACGTGATCTGGGGGTTT 8678 Query 247122 CCGGTCAGGTACACGTCCTGAGCGCCGTACGCGACGAGTTG 247162 || |||||||| | ||||| || || || ||||||||||| Sbjct 8679 CCTGTCAGGTAGAGATCCTGTGCCCCATAAGCGACGAGTTG 8719 Score = 84.2 bits (92), Expect = 5e-11 Identities = 79/101 (78%), Gaps = 0/101 (0%) Strand=Plus/Plus Query 258151 TCGATGGCGAAGTTGGTGTAACGACGGTACACGGTCTTGAAGAAGGTGATCTGAGGGTTG 258210 ||||||||||| || ||||| | ||||||||| ||| | | |||||||| ||||| Sbjct 8619 TCGATGGCGAAATTCGTGTACCTGCGGTACACGAGCTTCCACCACGTGATCTGGGGGTTT 8678 Query 258211 CCGGTCAGGTACACGTCCTGAGCGCCGTACGCGACGAGTTG 258251 || |||||||| | ||||| || || || ||||||||||| Sbjct 8679 CCTGTCAGGTAGAGATCCTGTGCCCCATAAGCGACGAGTTG 8719 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1179652797881868