Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Coccomyxa_20sp._20LA000219_20[genbank_20GCA_5F000812005.1_202015-01- 02] 106 sequences; 48,546,496 total letters Query= NC_010191.2 Length=186713 Score E Sequences producing significant alignments: (Bits) Value seq106 105 8e-18 seq102 95.1 1e-14 seq2 93.3 5e-14 seq87 91.5 2e-13 >seq106 Length=3132237 Score = 105 bits (116), Expect = 8e-18 Identities = 142/197 (72%), Gaps = 7/197 (4%) Strand=Plus/Plus Query 126058 GTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGTCCTGGCATGAGACC 126117 ||| || |||||||| || |||||||| || || |||||| || || |||||||| Sbjct 1547902 GTGCAGGCCCTCGTCGCGCGAGATGAGCTCGTTGGAGAAGGTGAGGCCGGGCATGAGCAG 1547961 Query 126118 CCGCTTCTTCAACCAGAAAATCGCACAAAATGAACCCGAGAAGAAGATTCCCTCCACACA 126177 |||||||| | |||||| || || || || || || |||| ||| |||||||| || Sbjct 1547962 GCGCTTCTTGAGCCAGAAGATGGCGCAGAAGGAGCCGCTGAAGTGGATGCCCTCCACGCA 1548021 Query 126178 CGCGAACGCAAAGAGACGCTCAGCAAAGGAGC--GCGACTTTGTGTCAAACCACTTCATC 126235 |||||||| | || ||||| |||||| || ||| || | | ||| | | | Sbjct 1548022 GGCGAACGCCACCAGGCGCTCCGCAAAGCTGCTGGCGC-----TGCCGATCCAGTGCTGC 1548076 Query 126236 GCCCACTGCGCCttttt 126252 |||||||||||||| || Sbjct 1548077 GCCCACTGCGCCTTCTT 1548093 >seq102 Length=2901463 Score = 95.1 bits (104), Expect = 1e-14 Identities = 112/149 (75%), Gaps = 2/149 (1%) Strand=Plus/Minus Query 126058 GTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGTCCTGGCATGAGACC 126117 |||||| |||||||| ||||||||||| || || |||||| || || ||||||| || Sbjct 1633770 GTGGAGGCCCTCGTCGCGGGAGATGAGCTCGTTGGAGAAGGTGAGGCCGTGCATGAGGCC 1633711 Query 126118 CCGCTTCTTCAACCAGAAAATCGC-ACAAAATGAACCCGAGAAGAAGATTCCCTCCACAC 126176 |||||||| | |||||| | ||| || || || ||||||||| |||||||| | Sbjct 1633710 GCGCTTCTTGAGCCAGAAGA-CGCTGCAGAAGCTGCCGCTGAAGAAGATGCCCTCCACGC 1633652 Query 126177 ACGCGAACGCAAAGAGACGCTCAGCAAAG 126205 | || |||| | || ||||| |||||| Sbjct 1633651 AGGCCCACGCCACCAGCCGCTCCGCAAAG 1633623 >seq2 Length=534433 Score = 93.3 bits (102), Expect = 5e-14 Identities = 117/161 (73%), Gaps = 0/161 (0%) Strand=Plus/Minus Query 114464 GGAAGGGCGATTGACGCCAGATTACACACAGAGGTCTCATCCTTATCAGTGTACTCTATA 114523 || || || ||||| |||| ||| || |||| ||||| || | |||||||| | | Sbjct 280812 GGGAGAGCAATTGATGCCAAATTGCATACAGCTGTCTCTTCAGCAGATGTGTACTCCACA 280753 Query 114524 ATTTCCGTACACAAATTTGAACTCTTAATGGTGCCCAAGTTCTTTTGATTTGACTTTGTG 114583 || || || || | ||| | ||| |||||||||| |||| ||||||||||| || Sbjct 280752 ATCTCAGTGCAGAGATTGCTGCACTTGATGGTGCCCAGATTCTGCTGATTTGACTTCCTG 280693 Query 114584 TTACACGCATCCTTGTAAAGCATGTATGGCGTCCCCGTCTC 114624 || || | |||||||| ||||||||||| | || ||||| Sbjct 280692 TTGCAGGAGTCCTTGTAGAGCATGTATGGGTTGCCTGTCTC 280652 >seq87 Length=36794 Score = 91.5 bits (100), Expect = 2e-13 Identities = 127/176 (72%), Gaps = 3/176 (2%) Strand=Plus/Minus Query 138194 CTCAACGGTCAAGACCGATTCAAGGCCCAAAAGGGTAAGTACTTCAACCAAGTGCAAGCG 138253 |||||||| || ||| | ||| | | | ||| ||||||||||| ||||| | Sbjct 17413 CTCAACGGCCACGACAGGTTCGACGAGCGTCTGGGCTCGTACTTCAACCTGGTGCAGCCC 17354 Query 138254 TACAACCACCACTCTGGC-TGCCCATACCCAGGTGTGT--ACGCGTACTCCTTCGCGCTC 138310 ||| | |||||| | | | |||| ||| | | | ||| ||||||||||| ||| Sbjct 17353 TACCAGCACCACACCAACATCCCCAGGTCCAAGGGCATCAACGTGTACTCCTTCGGACTC 17294 Query 138311 AAGCCAGAAGAACACCAACCAACTGGCACGTGCAACTTCTCCCGCATCGACAACGC 138366 ||||| || || ||||| || | || || |||||||||||||||||||||||||| Sbjct 17293 AAGCCCGAGGAGCACCAGCCCTCCGGAACCTGCAACTTCTCCCGCATCGACAACGC 17238 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 597352808506480