Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Coccomyxa_20sp._20LA000219_20[genbank_20GCA_5F000812005.1_202015-01- 02] 106 sequences; 48,546,496 total letters Query= NC_011183.1 Length=154641 Score E Sequences producing significant alignments: (Bits) Value seq57 82.4 8e-11 >seq57 Length=1368 Score = 82.4 bits (90), Expect = 8e-11 Identities = 180/265 (68%), Gaps = 6/265 (2%) Strand=Plus/Minus Query 95109 CATGCCCACGGCCTCCACGGCGCAGATCCTTGGCAACAACGAGTCGTTCGAACCCTTCAC 95168 |||||| ||||| || ||| ||||| || |||||| |||| |||| || | || Sbjct 268 CATGCCGACGGCATCGACGAGCCAGATTCTGGGCAACTCGGAGTGCATCGAGCCGGTGAC 209 Query 95169 CTCCAACGTGTACAACAGGCGGGTGCTCGCCGGGGAATTCCCCGTCATCAACAAGCACCT 95228 |||||||||||| |||||| | |||| || || ||| ||| |||||||| |||| Sbjct 208 AGCCAACGTGTACAGCAGGCGCACGATCGCGGGAGACTTCATGGTCGTCAACAAGTACCT 149 Query 95229 CCTACGGGACCTGA-CGTCTCTGGGTGTGTGGGGTGACAAGGTCAAGAACCAACTGCTAC 95287 | |||| || | || ||| || |||| || || | ||| | | | || Sbjct 148 GATGAGGGAGCTCATCGATTCT-GGCAAGTGGAACGAGCAGATGAAGCAGCGCATCCTGG 90 Query 95288 GCGCCAACGGCTCCGTCCAGAACATCCCGCAAATACCGGAGGACATC--AAGGCGCTCTA 95345 |||| | || || |||||| ||| | | || || ||||| || ||| | |||| Sbjct 89 CCGCCGAGGGATCTGTCCAGGGCATAGAGGAGATTCCCGAGGAGGTCCGAAG--GATCTA 32 Query 95346 CAAGACCGTGTGGGAGATCCCGCAG 95370 |||||| ||||||||||| || ||| Sbjct 31 CAAGACGGTGTGGGAGATTCCCCAG 7 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 494722544491760