Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Coccomyxa_20sp._20LA000219_20[genbank_20GCA_5F000812005.1_202015-01- 02] 106 sequences; 48,546,496 total letters Query= NC_011345.1 Length=155122 Score E Sequences producing significant alignments: (Bits) Value seq106 100 3e-16 seq100 96.9 3e-15 >seq106 Length=3132237 Score = 100 bits (110), Expect = 3e-16 Identities = 166/238 (70%), Gaps = 9/238 (4%) Strand=Plus/Minus Query 52327 TGCCGTGCGTTCGCAAAAAGGCTCAGTGGGCAATGAAGTGGATCGAGAGCGACACCGCCA 52386 |||| ||||| ||| ||||| |||||||| | | ||||||| |||| || | | Sbjct 1548107 TGCCATGCGTGGCCAAGAAGGCGCAGTGGGCGCAGCACTGGATCGGCAGCGCCAGCAGCT 1548048 Query 52387 CGCTGGCCGAGCGCATGGTGGCCTTCGCCATAGTCGAGGGCGTGtttttttCCGGCAGCT 52446 | || |||||| ||||||| |||||| || |||||| | || |||| || Sbjct 1548047 ---TTGCGGAGCGCCTGGTGGCGTTCGCCTGCGTGGAGGGCATCCACTTCAGCGGCTCCT 1547991 Query 52447 TTGCCGCCATCTTTTACATTAAAACGAAAGGCATA---ATGCCCGGCCTGACGTTCAGCA 52503 | ||||||||| | | || ||| || | ||||||||||| || ||| || Sbjct 1547990 TCTGCGCCATCTTCTGGCTCAA---GAAGCGCCTGCTCATGCCCGGCCTCACCTTCTCCA 1547934 Query 52504 ACGAGTTGATATCGCGCGACGAAGGACTGCACACGGACTTTGCGTGCCTCTACTACAA 52561 ||||| | || ||||||||||| || |||||||| ||||| || |||||| ||||| Sbjct 1547933 ACGAGCTCATCTCGCGCGACGAGGGCCTGCACACCGACTTCGCCTGCCTCCTGTACAA 1547876 Score = 91.5 bits (100), Expect = 1e-13 Identities = 146/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 138387 GCCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCT 138446 ||| || |||| |||| || | || | | | |||||||| || ||||||||||| Sbjct 2288061 GCCACCACGCAGGCGCAGCACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCTGC 2288120 Query 138447 CATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGG 138506 || || || ||||| || || || |||| | |||| || ||||| |||||||| || Sbjct 2288121 CAGGGTGCGGCCATCCTCCAGCTGCTTGCCGGCAAAGATCAGGCGCTGCTGGTCCGGGGG 2288180 Query 138507 TATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCAC 138566 || || || ||||| ||| || || | | || | |||||| | |||||||| Sbjct 2288181 GATGCCCTCCTTGTCCTGGATCTTGGACTTCACGTTCTCGATGGTGTCAGAGGACTCCAC 2288240 Query 138567 CTCGACCGTCAGCGTTTTACCAGTCAGAGT 138596 ||| | ||| | || || ||||||||||| Sbjct 2288241 CTCCAGCGTGATGGTCTTGCCAGTCAGAGT 2288270 Score = 91.5 bits (100), Expect = 1e-13 Identities = 146/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 138387 GCCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCT 138446 ||| || |||| |||| || | || | | | |||||||| || |||||||||||| Sbjct 2288514 GCCACCACGCAGGCGCAGCACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGC 2288573 Query 138447 CATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGG 138506 || || || ||||| || || || |||| | |||| || ||||| |||||||| || Sbjct 2288574 CAGGGTGCGGCCATCCTCCAGCTGCTTGCCGGCAAAGATCAGGCGCTGCTGGTCCGGGGG 2288633 Query 138507 TATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCAC 138566 || || || ||||| ||| || || | | || | |||||| | |||||||| Sbjct 2288634 GATGCCCTCCTTGTCCTGGATCTTGGACTTCACGTTCTCGATGGTGTCAGAGGACTCCAC 2288693 Query 138567 CTCGACCGTCAGCGTTTTACCAGTCAGAGT 138596 ||| | ||| | || || ||||| ||||| Sbjct 2288694 CTCCAGCGTGATGGTCTTGCCAGTGAGAGT 2288723 Score = 86.0 bits (94), Expect = 6e-12 Identities = 145/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 138387 GCCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCT 138446 ||| || |||| |||| || | || | | | |||||||| || |||||||||||| Sbjct 2288913 GCCACCACGCAGGCGCAGCACCAGGTGGAGGGTAGACTCCTTCTGGATGTTGTAGTCGGC 2288972 Query 138447 CATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGG 138506 || || || ||||| || || || |||| |||| || ||||| ||||| || || Sbjct 2288973 CAGGGTGCGGCCATCCTCCAGCTGCTTGCCGGCGAAGATGAGGCGCTGCTGGTCTGGGGG 2289032 Query 138507 TATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCAC 138566 || || || ||||| ||| || || | | ||| | |||||| | |||||||| Sbjct 2289033 AATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTTTCGATGGTGTCAGAAGACTCCAC 2289092 Query 138567 CTCGACCGTCAGCGTTTTACCAGTCAGAGT 138596 ||| | || | || || ||||||||||| Sbjct 2289093 CTCAAGGGTGATGGTCTTGCCAGTCAGAGT 2289122 >seq100 Length=2336451 Score = 96.9 bits (106), Expect = 3e-15 Identities = 158/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 138387 GCCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCT 138446 ||| || |||| ||||| || | || | | | |||||||| || |||||||||||| Sbjct 981221 GCCACCACGCAGACGCAGCACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGC 981162 Query 138447 CATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGG 138506 || || || ||||| || || || |||| | |||| || ||||| ||||||||||| Sbjct 981161 CAGCGTGCGGCCATCCTCCAGCTGCTTGCCGGCAAAGATCAGGCGCTGCTGGTCCGGAGG 981102 Query 138507 TATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCAC 138566 || || || ||||| ||| || || | | || | |||||| | |||||||| Sbjct 981101 AATGCCCTCCTTGTCCTGGATCTTGCTCTTCACGTTCTCGATGGTGTCAGAGGACTCCAC 981042 Query 138567 CTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 ||| | || | || || ||||| ||||| | ||||| ||||| Sbjct 981041 CTCCAGTGTGATGGTCTTGCCAGTGAGAGTCCTGCAAAAAAAATGCAT 980994 Score = 95.1 bits (104), Expect = 1e-14 Identities = 147/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 138387 GCCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCT 138446 ||| || |||| |||| || | || | | | |||||||| || |||||||||||| Sbjct 980819 GCCTCCACGCAGGCGCAGCACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGC 980760 Query 138447 CATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGG 138506 || || || ||||| || || || |||| | |||| |||||||| ||||||||||| Sbjct 980759 CAGTGTGCGGCCATCCTCCAGCTGCTTGCCGGCAAAGATCAGACGCTGCTGGTCCGGAGG 980700 Query 138507 TATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCAC 138566 || || || ||||| ||| || || | | || | |||||| | |||||||| Sbjct 980699 GATGCCCTCCTTGTCCTGGATCTTGCTCTTCACGTTCTCGATGGTGTCAGAGGACTCCAC 980640 Query 138567 CTCGACCGTCAGCGTTTTACCAGTCAGAGT 138596 ||| | || | || || |||||||| || Sbjct 980639 CTCCAGTGTGATGGTCTTGCCAGTCAGGGT 980610 Score = 91.5 bits (100), Expect = 1e-13 Identities = 146/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 138387 GCCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCT 138446 ||| || |||| ||||| || | || | | | |||||||| || |||||||||||| Sbjct 981628 GCCACCACGCAGACGCAGCACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGC 981569 Query 138447 CATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGG 138506 || || || ||||| || || || |||| | |||| || ||||| ||||||||||| Sbjct 981568 CAGCGTGCGGCCATCCTCCAGCTGCTTGCCGGCAAAGATCAGGCGCTGCTGGTCCGGAGG 981509 Query 138507 TATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCAC 138566 || || || ||||| ||| || || | | || | |||||| | |||||||| Sbjct 981508 GATTCCCTCCTTGTCCTGGATCTTGCTCTTCACATTCTCGATGGTGTCAGAGGACTCCAC 981449 Query 138567 CTCGACCGTCAGCGTTTTACCAGTCAGAGT 138596 ||| | || | || || ||||| || || Sbjct 981448 CTCCAGGGTGATGGTCTTGCCAGTGAGGGT 981419 Score = 84.2 bits (92), Expect = 2e-11 Identities = 144/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 || || |||| |||| || | || | | | |||||||| || |||||||||||| | Sbjct 982033 CCACCACGCAGGCGCAGCACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGCC 981974 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | || || |||||| || || || |||| | |||| || ||||| |||||||| || Sbjct 981973 AGCGTGCGGCCGTCCTCCAGCTGCTTGCCGGCAAAGATCAGGCGCTGCTGGTCCGGGGGG 981914 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCACC 138567 || || || ||||| ||| || || | | || | |||||| | ||||||||| Sbjct 981913 ATTCCCTCCTTGTCCTGGATCTTGCTCTTCACGTTCTCGATGGTGTCAGAGGACTCCACC 981854 Query 138568 TCGACCGTCAGCGTTTTACCAGTCAGAGT 138596 || | || | || || ||||| || || Sbjct 981853 TCCAGGGTGATGGTCTTGCCAGTGAGGGT 981825 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496261742452320