Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Coccomyxa_20sp._20LA000219_20[genbank_20GCA_5F000812005.1_202015-01- 02] 106 sequences; 48,546,496 total letters Query= NC_011616.1 Length=148634 Score E Sequences producing significant alignments: (Bits) Value seq106 120 3e-22 seq100 104 2e-17 seq2 95.1 1e-14 >seq106 Length=3132237 Score = 120 bits (132), Expect = 3e-22 Identities = 152/209 (73%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 ||||| || | |||| ||||| || | |||||||| || || || ||||| ||| || Sbjct 2288914 CCACCACGCAGGCGCAGCACCAGGTGGAGGGTAGACTCCTTCTGGATGTTGTAGTCGGCC 2288973 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | ||||| ||| || ||||| || || ||| |||| | |||||||| || || || Sbjct 2288974 AGGGTGCGGCCATCCTCCAGCTGCTTGCCGGCGAAGATGAGGCGCTGCTGGTCTGGGGGA 2289033 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACT 127066 ||||||||||||||| ||| || ||||| | ||||| |||||| | | ||| || Sbjct 2289034 ATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTTTCGATGGTGTCAGAAGACTCCACC 2289093 Query 127067 TCGACGGTCACCGTTTTGCCGGTCAGAGT 127095 || | ||| | || ||||| |||||||| Sbjct 2289094 TCAAGGGTGATGGTCTTGCCAGTCAGAGT 2289122 Score = 93.3 bits (102), Expect = 4e-14 Identities = 146/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 ||||| || | |||| ||||| || | || ||||| || || || ||||| || || Sbjct 2288062 CCACCACGCAGGCGCAGCACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCTGCC 2288121 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | ||||| ||| || ||||| || || || |||||| |||||||| || || || Sbjct 2288122 AGGGTGCGGCCATCCTCCAGCTGCTTGCCGGCAAAGATCAGGCGCTGCTGGTCCGGGGGG 2288181 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACT 127066 ||||||||||||||| ||| || ||| | | |||| |||||| | ||| || Sbjct 2288182 ATGCCCTCCTTGTCCTGGATCTTGGACTTCACGTTCTCGATGGTGTCAGAGGACTCCACC 2288241 Query 127067 TCGACGGTCACCGTTTTGCCGGTCAGAGT 127095 || | || | || ||||| |||||||| Sbjct 2288242 TCCAGCGTGATGGTCTTGCCAGTCAGAGT 2288270 Score = 93.3 bits (102), Expect = 4e-14 Identities = 146/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 ||||| || | |||| ||||| || | || ||||| || || || ||||| ||| || Sbjct 2288515 CCACCACGCAGGCGCAGCACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGCC 2288574 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | ||||| ||| || ||||| || || || |||||| |||||||| || || || Sbjct 2288575 AGGGTGCGGCCATCCTCCAGCTGCTTGCCGGCAAAGATCAGGCGCTGCTGGTCCGGGGGG 2288634 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACT 127066 ||||||||||||||| ||| || ||| | | |||| |||||| | ||| || Sbjct 2288635 ATGCCCTCCTTGTCCTGGATCTTGGACTTCACGTTCTCGATGGTGTCAGAGGACTCCACC 2288694 Query 127067 TCGACGGTCACCGTTTTGCCGGTCAGAGT 127095 || | || | || ||||| || ||||| Sbjct 2288695 TCCAGCGTGATGGTCTTGCCAGTGAGAGT 2288723 Score = 84.2 bits (92), Expect = 2e-11 Identities = 67/81 (83%), Gaps = 0/81 (0%) Strand=Plus/Minus Query 47223 ATGCCCGGCCTCACGTTTAGCAACGAGCTAATCTCGAGAGACGAAGGCCTGCACACCAAC 47282 |||||||||||||| || ||||||||| |||||| | ||||| |||||||||||| || Sbjct 1547955 ATGCCCGGCCTCACCTTCTCCAACGAGCTCATCTCGCGCGACGAGGGCCTGCACACCGAC 1547896 Query 47283 TTTGCCTGTCTCTACTACAAC 47303 || ||||| ||| |||||| Sbjct 1547895 TTCGCCTGCCTCCTGTACAAC 1547875 >seq100 Length=2336451 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 ||||| || | |||| ||||| || | || ||||| || || || ||||| ||| || Sbjct 981220 CCACCACGCAGACGCAGCACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGCC 981161 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | |||||| ||| || ||||| || || || |||||| |||||||| || ||||| Sbjct 981160 AGCGTGCGGCCATCCTCCAGCTGCTTGCCGGCAAAGATCAGGCGCTGCTGGTCCGGAGGA 981101 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACT 127066 ||||||||||||||| ||| || ||| | | |||| |||||| | ||| || Sbjct 981100 ATGCCCTCCTTGTCCTGGATCTTGCTCTTCACGTTCTCGATGGTGTCAGAGGACTCCACC 981041 Query 127067 TCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 || | || | || ||||| || ||||| | ||||| ||||| Sbjct 981040 TCCAGTGTGATGGTCTTGCCAGTGAGAGTCCTGCAAAAAAAATGCAT 980994 Score = 98.7 bits (108), Expect = 9e-16 Identities = 147/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 ||||| || | |||| ||||| || | || ||||| || || || ||||| ||| || Sbjct 981627 CCACCACGCAGACGCAGCACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGCC 981568 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | |||||| ||| || ||||| || || || |||||| |||||||| || ||||| Sbjct 981567 AGCGTGCGGCCATCCTCCAGCTGCTTGCCGGCAAAGATCAGGCGCTGCTGGTCCGGAGGG 981508 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACT 127066 || |||||||||||| ||| || ||| | | |||| |||||| | ||| || Sbjct 981507 ATTCCCTCCTTGTCCTGGATCTTGCTCTTCACATTCTCGATGGTGTCAGAGGACTCCACC 981448 Query 127067 TCGACGGTCACCGTTTTGCCGGTCAGAGT 127095 || | ||| | || ||||| || || || Sbjct 981447 TCCAGGGTGATGGTCTTGCCAGTGAGGGT 981419 Score = 95.1 bits (104), Expect = 1e-14 Identities = 139/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 126899 CGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAA 126958 |||| ||||| || | || ||||| || || || ||||| ||| ||| ||||| | Sbjct 980806 CGCAGCACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGCCAGTGTGCGGCCA 980747 Query 126959 TCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTG 127018 || || ||||| || || || |||||| |||||||| || ||||| |||||||||||| Sbjct 980746 TCCTCCAGCTGCTTGCCGGCAAAGATCAGACGCTGCTGGTCCGGAGGGATGCCCTCCTTG 980687 Query 127019 TCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACC 127078 ||| ||| || ||| | | |||| |||||| | ||| || || | || | Sbjct 980686 TCCTGGATCTTGCTCTTCACGTTCTCGATGGTGTCAGAGGACTCCACCTCCAGTGTGATG 980627 Query 127079 GTTTTGCCGGTCAGAGT 127095 || ||||| ||||| || Sbjct 980626 GTCTTGCCAGTCAGGGT 980610 Score = 93.3 bits (102), Expect = 4e-14 Identities = 151/216 (70%), Gaps = 1/216 (0%) Strand=Plus/Minus Query 126880 TACTGCTCCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTA 126939 ||||| |||||| || | |||| ||||| || | || ||||| || || || ||||| Sbjct 982039 TACTG-TCCACCACGCAGGCGCAGCACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTA 981981 Query 126940 ATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATC 126999 ||| ||| |||||| || || ||||| || || || |||||| |||||||| || Sbjct 981980 GTCGGCCAGCGTGCGGCCGTCCTCCAGCTGCTTGCCGGCAAAGATCAGGCGCTGCTGGTC 981921 Query 127000 GGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACT 127059 || || || |||||||||||| ||| || ||| | | |||| |||||| | Sbjct 981920 CGGGGGGATTCCCTCCTTGTCCTGGATCTTGCTCTTCACGTTCTCGATGGTGTCAGAGGA 981861 Query 127060 CTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGT 127095 ||| || || | ||| | || ||||| || || || Sbjct 981860 CTCCACCTCCAGGGTGATGGTCTTGCCAGTGAGGGT 981825 >seq2 Length=534433 Score = 95.1 bits (104), Expect = 1e-14 Identities = 112/149 (75%), Gaps = 12/149 (8%) Strand=Plus/Minus Query 146635 GCGATAGAGGCCAAGTTACATACGGCAGTCTCGTCCT----TGTCGCAATACTGCACAAT 146690 || || || ||||| || ||||| || ||||| || ||| |||| |||||| Sbjct 280806 GCAATTGATGCCAAATTGCATACAGCTGTCTCTTCAGCAGATGTG----TACTCCACAAT 280751 Query 146691 CTCGGCGCAGAGGTTGCTGCACTTGATGATGCCCAAAtttttttGGTT--ACTAAACTTG 146748 ||| | |||||| ||||||||||||||| |||||| ||| | || || ||| | || Sbjct 280750 CTCAGTGCAGAGATTGCTGCACTTGATGGTGCCCAGATTCTGCTGATTTGACTT--CCTG 280693 Query 146749 TTGCAGGGGTCCTTGTAGAGCATGTACGG 146777 ||||||| |||||||||||||||||| || Sbjct 280692 TTGCAGGAGTCCTTGTAGAGCATGTATGG 280664 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 475500169961440