Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Coccomyxa_20sp._20LA000219_20[genbank_20GCA_5F000812005.1_202015-01- 02] 106 sequences; 48,546,496 total letters Query= NC_013085.1 Length=194454 Score E Sequences producing significant alignments: (Bits) Value seq18 854 0.0 seq17 598 5e-166 >seq18 Length=145863 Score = 854 bits (946), Expect = 0.0 Identities = 784/986 (80%), Gaps = 4/986 (0%) Strand=Plus/Plus Query 7537 AGCAAGGTCAAGAGGGAAGTTGTGAGCATTACGCTCGTGCATGACTTCCATGCCAAGACC 7596 ||||||||| || ||||||||||| || || | |||||||| |||||||| ||||| Sbjct 119648 AGCAAGGTCTAGTGGGAAGTTGTGTGCGTTTCTTTCGTGCATTACTTCCATACCAAGGTT 119707 Query 7597 AGCACGGTTGAGCACGTCTGCCCAGGTGTTCAGGACACGACCTTGACCATCAATGATGGA 7656 |||||||||| | ||| |||| ||||| | || ||||||||| || | | || Sbjct 119708 GGCACGGTTGATGATGTCACCCCAAGTGTTGATAACGCGACCTTGAGAGTCTACAACTGA 119767 Query 7657 CTGGTTGAAGTTGAAACCGTTGAGGTTGAATGCCATGGTGCTAACACCAAGAGCAGTGAA 7716 ||||||||||||||| ||||| |||||||||||||| || | |||||||||||| || Sbjct 119768 CTGGTTGAAGTTGAATCCGTTAAGGTTGAATGCCATAGTAGAGATACCAAGAGCAGTAAA 119827 Query 7717 CCAGATGCCAACAACTGGCCATGCTGCGAGGAAGAAGTGCAGCGAACGGGAGTTGTTGAA 7776 |||||| ||||| || ||||| || || ||||||||||| || ||||| ||||||||||| Sbjct 119828 CCAGATACCAACTACAGGCCAAGCAGCAAGGAAGAAGTGAAGTGAACGAGAGTTGTTGAA 119887 Query 7777 CGAAGCGTATTGGAAGATCAGACGACCAAAGTATCCGTGAGCAGCAACGATGTTGTAGGT 7836 ||||||||||||||||| |||||||||||||| ||||| |||||||| |||||||| || Sbjct 119888 TGAAGCGTATTGGAAGATTAGACGACCAAAGTAACCGTGTGCAGCAACAATGTTGTAAGT 119947 Query 7837 CTCTTCTTCTTGACCGAACTTATAACCATAGTTCTGGGACTCAGACTCAGTGGTTTCACG 7896 ||||||||||||||||| || |||||| ||| || || |||||| |||||||| Sbjct 119948 TTCTTCTTCTTGACCGAATTTGTAACCAGCGTTTGCTGATTCGTTCTCAGTAGTTTCACG 120007 Query 7897 AACCAGAGAAGAGGTTACAAGCGAACCATGCATCGCACTGAACAGAGAACCACCAAAGAC 7956 | || ||||| ||||| || ||||| ||||| || ||| || |||||||| || || Sbjct 120008 GATAAGTGAAGAAGTTACTAGAGAACCGTGCATAGCTGAGAAAAGTGAACCACCGAACAC 120067 Query 7957 ACCAGCGACGCCCAGCATGTGGAAGGGGTGCATCAGGATGTTGTGCTCTGCTTGGAAGAC 8016 |||||| || || ||||||||||| |||||||| |||||||||||||| |||||||| || Sbjct 120068 ACCAGCAACACCAAGCATGTGGAATGGGTGCATAAGGATGTTGTGCTCAGCTTGGAAAAC 120127 Query 8017 AAGCATGTAGTTGAACGTACCAGAGATGCCAAGAGGCATAGCGTCAGAGAAAGAACCTTG 8076 || |||| ||||||| || || || || || | ||||||| | || ||||| |||||||| Sbjct 120128 AATCATGAAGTTGAAAGTTCCTGAAATACCCAAAGGCATACCATCTGAGAATGAACCTTG 120187 Query 8077 ACCGAAAGGATAGACGAGGAATACAGCAGATGCTGCAGCAACTGGAGCAGAGTATGCTAC 8136 ||||| ||| |||| || ||||||||||| || || |||||||| |||||||| ||||| Sbjct 120188 ACCGATAGGGTAGATGATGAATACAGCAGTAGCAGCTGCAACTGGTGCAGAGTAAGCTAC 120247 Query 8137 ACAGATCCAGGGACGCATACCTAGACGGTAAGAAAGTTCCCACTCACGACCCATGTATGC 8196 | |||||| |||||||| |||| |||| |||||||||||||||||||||||||||| || Sbjct 120248 AGCGATCCATGGACGCATTCCTAAACGGAAAGAAAGTTCCCACTCACGACCCATGTA-GC 120306 Query 8197 A-TAGATACCGATCAGGAAGTGGAAGATAACGAGTTGGAAAGGACCACCGTTGTAGAGCC 8255 | | || || | | |||||| | | | |||||| |||||||||||||||| |||| Sbjct 120307 AGCAAATGCCTAGGAAGAAGTGACATACGATTAGTTGGTAAGGACCACCGTTGTAAAGCC 120366 Query 8256 ACTCATCAAGAGAAGCTGCTTCCCAGATGGGATAGAAGTGGAGACCAATAGCGTTAGAAG 8315 | || ||||| ||||| |||||||| || || |||||||| |||||||| ||||| || | Sbjct 120367 ATTCGTCAAGTGAAGCAGCTTCCCAAATTGGGTAGAAGTGCAGACCAATTGCGTTTGATG 120426 Query 8316 AAGGAACAACAGCACCAGAGATGATGTTGTTGCCATACATGAGCGAACCAGCGACGGGTT 8375 |||||||||||||||||| ||||||||||| || || | || ||||| | || || | Sbjct 120427 TAGGAACAACAGCACCAGAAATGATGTTGTTACCGTAAAGTAGAGAACCTGATACAGGCT 120486 Query 8376 CACGGATGCCGTCAATGTCCACAGGAGGAGCAGCGACGAAAGCGACGATGAA-ACAAATA 8434 ||||||| || || ||||| |||||||| ||||| || || |||| ||||| ||| | | Sbjct 120487 CACGGATACCATCGATGTCTACAGGAGGTGCAGCAACAAATGCGATAATGAACACAGA-A 120545 Query 8435 GCAGCAGCGAGCAGCGTAGGAATCATCAGGACACCGAACCAACCGACATACAGACGATTG 8494 | |||| | || ||||| ||||| || ||||| |||||||| | || || || || Sbjct 120546 GTTGCAGTTAAAAGAGTAGGGATCATTAGAACACCAAACCAACCAATGTAAAGGCGGTTT 120605 Query 8495 TTGGTGGAGGTTACCCAGTTACAGAA 8520 | ||| || ||||| | |||||| Sbjct 120606 TCAGTGCTAGTAACCCATTCACAGAA 120631 >seq17 Length=88650 Score = 598 bits (662), Expect = 5e-166 Identities = 745/1020 (73%), Gaps = 8/1020 (1%) Strand=Plus/Plus Query 6263 AGAGCGTTGCCTCTTGGCAATACTTCTTCAGGAAATACAAAGTTTTCATGTGGTTGATCC 6322 |||||||| || | ||| || || || || || ||||||| ||||||||||| || ||| Sbjct 86615 AGAGCGTTTCCACGTGGTAAAACCTCCTCTGGGAATACAAGTTTTTCATGTGGCTGGTCC 86674 Query 6323 ACTGGTGCCATCCAGGCACGTAGACCTTCATTCAATAGGATGTTCTTGGTATAGAACGTC 6382 | |||||||| || | | |||||| || | || ||||| || || ||||| ||| Sbjct 86675 TGAGCCGCCATCCATGCTCTAATACCTTCGTTTAGAAGAATGTTTTTTGTGTAGAAAGTC 86734 Query 6383 TCGAACTCTGGATCCTCCGCTGCTCTGATCTCTTGTGAAACAAAGTCATAAGCTCTAAGG 6442 ||||| || || ||||| ||||| | |||||||||||||||||||||||| |||| | | Sbjct 86735 TCGAATTCAGGGTCCTCAGCTGCACGGATCTCTTGTGAAACAAAGTCATATGCTCGTAAG 86794 Query 6443 TTAAGTGCAAGACCAATAATACCAATGCTAGAGGTCCAAAGACCCATAACAGGAACAAAC 6502 ||||| ||||| || |||| |||||| | |||||||||| | ||||| ||||| Sbjct 86795 TTAAGAGCAAGTCCGATAACACCAATTGCACTCATCCAAAGACCAGTTACAGGGACAAAA 86854 Query 6503 AGCATAAAGAAATGTAGCCAACGCTTATTGCTGAAGGCGATACCAAAGATCTGAGACCAG 6562 |||||||||||||| |||||||| || || ||| || | ||||||||| || ||||| Sbjct 86855 AGCATAAAGAAATGAAGCCAACGTTTGTTTGAGAAAGCTACACCAAAGATTTGTGACCAA 86914 Query 6563 AAACGATTAGCCGTGACCATCGAATAGGTCTCCTCTTCTTGTGTAGGCTCAAACGCCTTG 6622 ||||| ||||| || ||||| || || ||||| || |||| || || | || || | Sbjct 86915 AAACGGTTAGCTGTTACCATAGAGTATGTCTCTTCGGCTTGCGTTGGGTTGAATGCACGG 86974 Query 6623 AAAGTATTTGATTGTTCACCATCTTCAAACAAAGTATTCTCTACAGTAGCACCGTGAATA 6682 ||||| || | |||||||||||||| | ||| |||||||| || || |||||||| Sbjct 86975 AAAGTGTTCGCACCGTCACCATCTTCAAAAAGAGTGTTCTCTACTGTTGCTCCGTGAATT 87034 Query 6683 GCACAGAGCAATGCTCCACCTAAGATACCTGCTACACCCATCATATGAAACGGGTTGAGC 6742 ||||| || | ||| |||||| | |||||| ||||||||||| || || ||||| ||| Sbjct 87035 GCACATAGAAGTGCAGCACCTAGAACACCTGCCACACCCATCATGTGGAAAGGGTTAAGC 87094 Query 6743 GTCCAGTTGTGGAAGCCCTGTAGGAAGAGTAAGAAGCGGAATATCGCTGCAACACCAAAC 6802 |||||||||||||| || || | ||| || | || ||||| || || || |||||||| Sbjct 87095 GTCCAGTTGTGGAAACCTTGGAAGAAAAGAATAAATCGGAAGATTGCCGCTACACCAAAG 87154 Query 6803 GACGGCGCAAAGAACCAACTGGACTGTCCGAGAGGATACATGAGAAAGACAGACACAAAG 6862 |||||||||||||| | || ||||| | |||||| || || ||||| || || ||| Sbjct 87155 CTAGGCGCAAAGAACCAGCCTGATTGTCCCAAAGGATAGATAAGGAAGACTGATACGAAG 87214 Query 6863 ACAGCAATGGGACCAGAAAACGCGATTGCATTGTAGGGACGAA----TACCGACTAGACG 6918 |||||||| || | || || || || || ||||| ||||||| |||||| | Sbjct 87215 ACAGCAATAGGTGCTGAGAAGGCAATAGCGTTGTAAGGACGAAGCTTTACCGA----TCT 87270 Query 6919 TGCGATCTCAAACTGCCGAAGCATGAAACCTATAAGGGCAAAGGCTCCGTGGAGCGCCAC 6978 ||| | |||||||| || ||||| || || ||||| |||||||| || || | || || Sbjct 87271 TGCAAGTTCAAACTGTCGTAGCATAAACCCAATAAGCGCAAAGGCACCATGTAAAGCTAC 87330 Query 6979 AAAAGGCCATAGTCCCCCAAGTTGGAGCCAGCGGACGAAATCTCCCTGAGCTTCTGGACC 7038 |||| ||| || || || | || |||||| || || || || || || || || Sbjct 87331 GAAAGCCCACAGACCACCCAACTGACACCAGCGAGTAAAGTCACCTTGTGCCTCAGGCCC 87390 Query 7039 CCATAGAAGAAGTAGGGAATGTCCGAGAGCGTCAGCAGGAGTTGATACAGCAGCAGTAAG 7098 |||||| | | | || || || | || || |||||||| || || || || | Sbjct 87391 CCATAGGAACAACAATGAGTGACCCATGCTGTTTGCTGGAGTTGAAACGGCTGCTGTTAA 87450 Query 7099 GAAATTACATCCCTCAAGATACGAAGAAGCAATCCCGTGAGTGTACCAGCTCGTGACGAA 7158 ||| || ||||| || | || ||| |||| || || |||||||| || ||||| Sbjct 87451 GAAGTTGCATCCTTCTAAGTAAGAACTTGCAAGTCCATGTGTGTACCAAGATGTAACGAA 87510 Query 7159 AGTTGTGCCCGTGAGCCAACCGCCCAGTGCCAGGTAAGCAGTAGGGAACAGAAGAAGACC 7218 || || || || | ||| || || | ||| |||||||| |||||||| || | ||||| Sbjct 87511 TGTGGTTCCTGTCAACCAGCCACCTAATGCAAGGTAAGCTGTAGGGAAGAGTAACAGACC 87570 Query 7219 TGACCAACCAACAAAAACGAACCTATCACGCTTAAGCCAGTCATCGAGTACATCAAACCA 7278 ||||| ||||| || || || | ||||| | ||||||||| | | |||||||||| Sbjct 87571 AGACCAGCCAACGAACACAAATCGTTCACGGCGCAACCAGTCATCTACTTCATCAAACCA 87630 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 622123975684640