Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Coccomyxa_20sp._20LA000219_20[genbank_20GCA_5F000812005.1_202015-01- 02] 106 sequences; 48,546,496 total letters Query= NC_013288.1 Length=191761 Score E Sequences producing significant alignments: (Bits) Value seq102 100 3e-16 seq2 93.3 5e-14 seq87 91.5 2e-13 >seq102 Length=2901463 Score = 100 bits (110), Expect = 3e-16 Identities = 113/149 (76%), Gaps = 2/149 (1%) Strand=Plus/Minus Query 127531 GTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATGAGACC 127590 |||||| |||||||| ||||||||||| || || |||||| || || ||||||| || Sbjct 1633770 GTGGAGGCCCTCGTCGCGGGAGATGAGCTCGTTGGAGAAGGTGAGGCCGTGCATGAGGCC 1633711 Query 127591 CCGCTTCTTCAACCAGAAAATCGC-ACAAAATGAGCCAGAGAAGAAGATCCCCTCCACAC 127649 |||||||| | |||||| | ||| || || ||| ||||||||| |||||||| | Sbjct 1633710 GCGCTTCTTGAGCCAGAAGA-CGCTGCAGAAGCTGCCGCTGAAGAAGATGCCCTCCACGC 1633652 Query 127650 ACGCGAACGCAAATAGACGCTCGGCAAAG 127678 | || |||| | || ||||| |||||| Sbjct 1633651 AGGCCCACGCCACCAGCCGCTCCGCAAAG 1633623 >seq2 Length=534433 Score = 93.3 bits (102), Expect = 5e-14 Identities = 117/161 (73%), Gaps = 0/161 (0%) Strand=Plus/Minus Query 116425 GGAAGGGCGATTGACGCCAGATTACACACAGAGGTCTCATCCTTATCAGTGTACTCTATA 116484 || || || ||||| |||| ||| || |||| ||||| || | |||||||| | | Sbjct 280812 GGGAGAGCAATTGATGCCAAATTGCATACAGCTGTCTCTTCAGCAGATGTGTACTCCACA 280753 Query 116485 ATTTCCGTACACAAATTTGAACTCTTAATGGTGCCCAAGTTCTTTTGATTTGACTTTGTG 116544 || || || || | ||| | ||| |||||||||| |||| ||||||||||| || Sbjct 280752 ATCTCAGTGCAGAGATTGCTGCACTTGATGGTGCCCAGATTCTGCTGATTTGACTTCCTG 280693 Query 116545 TTACACGCATCCTTGTAGAGCATATATGGCGTCCCCGTCTC 116585 || || | |||||||||||||| ||||| | || ||||| Sbjct 280692 TTGCAGGAGTCCTTGTAGAGCATGTATGGGTTGCCTGTCTC 280652 >seq87 Length=36794 Score = 91.5 bits (100), Expect = 2e-13 Identities = 127/176 (72%), Gaps = 3/176 (2%) Strand=Plus/Minus Query 140239 CTCAACGGTCAAGACCGATTCAAGGCCCAAAAGGGTAAGTACTTCAACCAAGTGCAAGCG 140298 |||||||| || ||| | ||| | | | ||| ||||||||||| ||||| | Sbjct 17413 CTCAACGGCCACGACAGGTTCGACGAGCGTCTGGGCTCGTACTTCAACCTGGTGCAGCCC 17354 Query 140299 TACAACCACCACTCTGGC-TGCCCATACCCAGGTGTGT--ACGCGTACTCCTTCGCGCTC 140355 ||| | |||||| | | | |||| ||| | | | ||| ||||||||||| ||| Sbjct 17353 TACCAGCACCACACCAACATCCCCAGGTCCAAGGGCATCAACGTGTACTCCTTCGGACTC 17294 Query 140356 AAGCCAGAAGAACACCAACCAACTGGCACATGCAACTTCTCCCGCATCGACAACGC 140411 ||||| || || ||||| || | || || |||||||||||||||||||||||||| Sbjct 17293 AAGCCCGAGGAGCACCAGCCCTCCGGAACCTGCAACTTCTCCCGCATCGACAACGC 17238 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 613506387102960