Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Coccomyxa_20sp._20LA000219_20[genbank_20GCA_5F000812005.1_202015-01- 02] 106 sequences; 48,546,496 total letters Query= NC_013756.1 Length=368454 Score E Sequences producing significant alignments: (Bits) Value seq100 150 4e-31 seq106 145 2e-29 >seq100 Length=2336451 Score = 150 bits (166), Expect = 4e-31 Identities = 155/203 (76%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468 || || | ||| || |||||||| || |||||||| |||| ||||||||| |||| || Sbjct 981214 CGCAGACGCAGCACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGCCAGCGTG 981155 Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528 | ||||| ||||||||||| ||||| ||||| || ||||||||||||||| ||| || Sbjct 981154 CGGCCATCCTCCAGCTGCTTGCCGGCAAAGATCAGGCGCTGCTGGTCCGGAGGAATGCCC 981095 Query 199529 TCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAAC 199588 || ||||| ||||| ||||||| |||| |||||| | | || || |||| Sbjct 981094 TCCTTGTCCTGGATCTTGCTCTTCACGTTCTCGATGGTGTCAGAGGACTCCACCTCCAGT 981035 Query 199589 GTGATCGTCTTACCCGTGAGAGT 199611 ||||| ||||| || |||||||| Sbjct 981034 GTGATGGTCTTGCCAGTGAGAGT 981012 Score = 141 bits (156), Expect = 2e-28 Identities = 153/203 (75%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468 || || | ||| || |||||||| || |||||||| |||| ||||||||| |||| || Sbjct 980812 CGCAGGCGCAGCACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGCCAGTGTG 980753 Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528 | ||||| ||||||||||| ||||| ||||| |||||||||||||||||| || || Sbjct 980752 CGGCCATCCTCCAGCTGCTTGCCGGCAAAGATCAGACGCTGCTGGTCCGGAGGGATGCCC 980693 Query 199529 TCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAAC 199588 || ||||| ||||| ||||||| |||| |||||| | | || || |||| Sbjct 980692 TCCTTGTCCTGGATCTTGCTCTTCACGTTCTCGATGGTGTCAGAGGACTCCACCTCCAGT 980633 Query 199589 GTGATCGTCTTACCCGTGAGAGT 199611 ||||| ||||| || || || || Sbjct 980632 GTGATGGTCTTGCCAGTCAGGGT 980610 Score = 141 bits (156), Expect = 2e-28 Identities = 153/203 (75%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468 || || | ||| || |||||||| || |||||||| |||| ||||||||| |||| || Sbjct 981621 CGCAGACGCAGCACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGCCAGCGTG 981562 Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528 | ||||| ||||||||||| ||||| ||||| || ||||||||||||||| ||||| Sbjct 981561 CGGCCATCCTCCAGCTGCTTGCCGGCAAAGATCAGGCGCTGCTGGTCCGGAGGGATTCCC 981502 Query 199529 TCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAAC 199588 || ||||| ||||| |||||| |||| |||||| | | || || |||| Sbjct 981501 TCCTTGTCCTGGATCTTGCTCTTCACATTCTCGATGGTGTCAGAGGACTCCACCTCCAGG 981442 Query 199589 GTGATCGTCTTACCCGTGAGAGT 199611 ||||| ||||| || ||||| || Sbjct 981441 GTGATGGTCTTGCCAGTGAGGGT 981419 Score = 136 bits (150), Expect = 9e-27 Identities = 152/203 (75%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468 || || | ||| || |||||||| || |||||||| |||| ||||||||| |||| || Sbjct 982027 CGCAGGCGCAGCACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGCCAGCGTG 981968 Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528 | || || ||||||||||| ||||| ||||| || |||||||||||||| ||||| Sbjct 981967 CGGCCGTCCTCCAGCTGCTTGCCGGCAAAGATCAGGCGCTGCTGGTCCGGGGGGATTCCC 981908 Query 199529 TCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAAC 199588 || ||||| ||||| ||||||| |||| |||||| | | || || |||| Sbjct 981907 TCCTTGTCCTGGATCTTGCTCTTCACGTTCTCGATGGTGTCAGAGGACTCCACCTCCAGG 981848 Query 199589 GTGATCGTCTTACCCGTGAGAGT 199611 ||||| ||||| || ||||| || Sbjct 981847 GTGATGGTCTTGCCAGTGAGGGT 981825 >seq106 Length=3132237 Score = 145 bits (160), Expect = 2e-29 Identities = 154/203 (76%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468 || || | ||| || |||||||| || |||||||| |||| ||||||||| |||| || Sbjct 2288521 CGCAGGCGCAGCACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGCCAGGGTG 2288580 Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528 | ||||| ||||||||||| ||||| ||||| || |||||||||||||| || || Sbjct 2288581 CGGCCATCCTCCAGCTGCTTGCCGGCAAAGATCAGGCGCTGCTGGTCCGGGGGGATGCCC 2288640 Query 199529 TCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAAC 199588 || ||||| ||||| ||||||| |||| |||||| | | || || |||| | Sbjct 2288641 TCCTTGTCCTGGATCTTGGACTTCACGTTCTCGATGGTGTCAGAGGACTCCACCTCCAGC 2288700 Query 199589 GTGATCGTCTTACCCGTGAGAGT 199611 ||||| ||||| || |||||||| Sbjct 2288701 GTGATGGTCTTGCCAGTGAGAGT 2288723 Score = 141 bits (156), Expect = 2e-28 Identities = 153/203 (75%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468 || || | ||| || |||||||| || |||||||| |||| ||||||||| |||| || Sbjct 2288068 CGCAGGCGCAGCACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCTGCCAGGGTG 2288127 Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528 | ||||| ||||||||||| ||||| ||||| || |||||||||||||| || || Sbjct 2288128 CGGCCATCCTCCAGCTGCTTGCCGGCAAAGATCAGGCGCTGCTGGTCCGGGGGGATGCCC 2288187 Query 199529 TCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAAC 199588 || ||||| ||||| ||||||| |||| |||||| | | || || |||| | Sbjct 2288188 TCCTTGTCCTGGATCTTGGACTTCACGTTCTCGATGGTGTCAGAGGACTCCACCTCCAGC 2288247 Query 199589 GTGATCGTCTTACCCGTGAGAGT 199611 ||||| ||||| || || ||||| Sbjct 2288248 GTGATGGTCTTGCCAGTCAGAGT 2288270 Score = 136 bits (150), Expect = 9e-27 Identities = 152/203 (75%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468 || || | ||| || |||||||| || |||||||| |||| ||||||||| |||| || Sbjct 2288920 CGCAGGCGCAGCACCAGGTGGAGGGTAGACTCCTTCTGGATGTTGTAGTCGGCCAGGGTG 2288979 Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528 | ||||| ||||||||||| |||||||||||||| ||||||||||| || ||| || Sbjct 2288980 CGGCCATCCTCCAGCTGCTTGCCGGCGAAGATGAGGCGCTGCTGGTCTGGGGGAATGCCC 2289039 Query 199529 TCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAAC 199588 || ||||| ||||| ||| || ||||| |||||| | | || || || | Sbjct 2289040 TCCTTGTCCTGGATCTTGGACTTGACATTTTCGATGGTGTCAGAAGACTCCACCTCAAGG 2289099 Query 199589 GTGATCGTCTTACCCGTGAGAGT 199611 ||||| ||||| || || ||||| Sbjct 2289100 GTGATGGTCTTGCCAGTCAGAGT 2289122 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1178919998877102