Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Coccomyxa_20sp._20LA000219_20[genbank_20GCA_5F000812005.1_202015-01- 02] 106 sequences; 48,546,496 total letters Query= NC_013772.1 Length=176677 Score E Sequences producing significant alignments: (Bits) Value seq100 129 7e-25 seq106 125 8e-24 >seq100 Length=2336451 Score = 129 bits (142), Expect = 7e-25 Identities = 155/211 (73%), Gaps = 0/211 (0%) Strand=Plus/Minus Query 46365 TGCCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGG 46424 ||||||| | | |||| |||||| || | || |||||| ||||| |||||||||| Sbjct 980820 TGCCTCCACGCAGGCGCAGCACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGG 980761 Query 46425 ATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCG 46484 || ||||| | || || |||||||||||||| || |||| ||||||||||| | | Sbjct 980760 CCAGTGTGCGGCCATCCTCCAGCTGCTTGCCGGCAAAGATCAGACGCTGCTGGTCCGGAG 980701 Query 46485 GCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCA 46544 | | || |||||||||| |||||| |||| | || | | ||||| || |||| Sbjct 980700 GGATGCCCTCCTTGTCCTGGATCTTGCTCTTCACGTTCTCGATGGTGTCAGAGGACTCCA 980641 Query 46545 CATCCACCGTGATGGTTTTGCCCGTCAGCGT 46575 | |||| |||||||| ||||| ||||| || Sbjct 980640 CCTCCAGTGTGATGGTCTTGCCAGTCAGGGT 980610 Score = 129 bits (142), Expect = 7e-25 Identities = 155/211 (73%), Gaps = 0/211 (0%) Strand=Plus/Minus Query 46365 TGCCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGG 46424 |||| || | | ||||| |||||| || | || |||||| ||||| |||||||||| Sbjct 981222 TGCCACCACGCAGACGCAGCACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGG 981163 Query 46425 ATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCG 46484 || ||||| | || || |||||||||||||| || |||| |||||||||||| | | Sbjct 981162 CCAGCGTGCGGCCATCCTCCAGCTGCTTGCCGGCAAAGATCAGGCGCTGCTGGTCCGGAG 981103 Query 46485 GCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCA 46544 | | || |||||||||| |||||| |||| | || | | ||||| || |||| Sbjct 981102 GAATGCCCTCCTTGTCCTGGATCTTGCTCTTCACGTTCTCGATGGTGTCAGAGGACTCCA 981043 Query 46545 CATCCACCGTGATGGTTTTGCCCGTCAGCGT 46575 | |||| |||||||| ||||| || || || Sbjct 981042 CCTCCAGTGTGATGGTCTTGCCAGTGAGAGT 981012 Score = 125 bits (138), Expect = 8e-24 Identities = 146/197 (74%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 46379 CGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCG 46438 |||| |||||| || | || |||||| ||||| |||||||||| || ||||| || Sbjct 982021 CGCAGCACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGCCAGCGTGCGGCCG 981962 Query 46439 TCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTG 46498 || || |||||||||||||| || |||| |||||||||||| | || | | ||||||| Sbjct 981961 TCCTCCAGCTGCTTGCCGGCAAAGATCAGGCGCTGCTGGTCCGGGGGGATTCCCTCCTTG 981902 Query 46499 TCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCCACCGTGATG 46558 ||| |||||| |||| | || | | ||||| || ||||| |||| |||||| Sbjct 981901 TCCTGGATCTTGCTCTTCACGTTCTCGATGGTGTCAGAGGACTCCACCTCCAGGGTGATG 981842 Query 46559 GTTTTGCCCGTCAGCGT 46575 || ||||| || || || Sbjct 981841 GTCTTGCCAGTGAGGGT 981825 Score = 123 bits (136), Expect = 3e-23 Identities = 154/211 (73%), Gaps = 0/211 (0%) Strand=Plus/Minus Query 46365 TGCCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGG 46424 |||| || | | ||||| |||||| || | || |||||| ||||| |||||||||| Sbjct 981629 TGCCACCACGCAGACGCAGCACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGG 981570 Query 46425 ATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCG 46484 || ||||| | || || |||||||||||||| || |||| |||||||||||| | | Sbjct 981569 CCAGCGTGCGGCCATCCTCCAGCTGCTTGCCGGCAAAGATCAGGCGCTGCTGGTCCGGAG 981510 Query 46485 GCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCA 46544 | | | |||||||||| |||||| |||| | || | | ||||| || |||| Sbjct 981509 GGATTCCCTCCTTGTCCTGGATCTTGCTCTTCACATTCTCGATGGTGTCAGAGGACTCCA 981450 Query 46545 CATCCACCGTGATGGTTTTGCCCGTCAGCGT 46575 | |||| |||||||| ||||| || || || Sbjct 981449 CCTCCAGGGTGATGGTCTTGCCAGTGAGGGT 981419 >seq106 Length=3132237 Score = 125 bits (138), Expect = 8e-24 Identities = 146/197 (74%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 46379 CGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCG 46438 |||| |||||| || | || |||||| ||||| |||||||| | || ||||| | Sbjct 2288074 CGCAGCACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCTGCCAGGGTGCGGCCA 2288133 Query 46439 TCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTG 46498 || || |||||||||||||| || |||| |||||||||||| | || | || ||||||| Sbjct 2288134 TCCTCCAGCTGCTTGCCGGCAAAGATCAGGCGCTGCTGGTCCGGGGGGATGCCCTCCTTG 2288193 Query 46499 TCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCCACCGTGATG 46558 ||| |||||| ||| | || | | ||||| || ||||| |||| ||||||| Sbjct 2288194 TCCTGGATCTTGGACTTCACGTTCTCGATGGTGTCAGAGGACTCCACCTCCAGCGTGATG 2288253 Query 46559 GTTTTGCCCGTCAGCGT 46575 || ||||| ||||| || Sbjct 2288254 GTCTTGCCAGTCAGAGT 2288270 Score = 125 bits (138), Expect = 8e-24 Identities = 146/197 (74%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 46379 CGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCG 46438 |||| |||||| || | || |||||| ||||| |||||||||| || ||||| | Sbjct 2288527 CGCAGCACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGCCAGGGTGCGGCCA 2288586 Query 46439 TCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTG 46498 || || |||||||||||||| || |||| |||||||||||| | || | || ||||||| Sbjct 2288587 TCCTCCAGCTGCTTGCCGGCAAAGATCAGGCGCTGCTGGTCCGGGGGGATGCCCTCCTTG 2288646 Query 46499 TCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCCACCGTGATG 46558 ||| |||||| ||| | || | | ||||| || ||||| |||| ||||||| Sbjct 2288647 TCCTGGATCTTGGACTTCACGTTCTCGATGGTGTCAGAGGACTCCACCTCCAGCGTGATG 2288706 Query 46559 GTTTTGCCCGTCAGCGT 46575 || ||||| || || || Sbjct 2288707 GTCTTGCCAGTGAGAGT 2288723 Score = 125 bits (138), Expect = 8e-24 Identities = 146/197 (74%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 46379 CGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCG 46438 |||| |||||| || | ||| |||||| ||||| |||||||||| || ||||| | Sbjct 2288926 CGCAGCACCAGGTGGAGGGTAGACTCCTTCTGGATGTTGTAGTCGGCCAGGGTGCGGCCA 2288985 Query 46439 TCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTG 46498 || || ||||||||||||||||| || | |||||||||||| | || | || ||||||| Sbjct 2288986 TCCTCCAGCTGCTTGCCGGCGAAGATGAGGCGCTGCTGGTCTGGGGGAATGCCCTCCTTG 2289045 Query 46499 TCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCCACCGTGATG 46558 ||| |||||| ||||| | | | ||||| || ||||| || | |||||| Sbjct 2289046 TCCTGGATCTTGGACTTGACATTTTCGATGGTGTCAGAAGACTCCACCTCAAGGGTGATG 2289105 Query 46559 GTTTTGCCCGTCAGCGT 46575 || ||||| ||||| || Sbjct 2289106 GTCTTGCCAGTCAGAGT 2289122 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 565237651059120