Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Coccomyxa_20sp._20LA000219_20[genbank_20GCA_5F000812005.1_202015-01- 02] 106 sequences; 48,546,496 total letters Query= NC_013953.1 Length=156344 Score E Sequences producing significant alignments: (Bits) Value seq20 196 5e-45 seq106 123 2e-23 seq100 123 2e-23 seq102 111 2e-19 >seq20 Length=132363 Score = 196 bits (216), Expect = 5e-45 Identities = 410/605 (68%), Gaps = 12/605 (2%) Strand=Plus/Minus Query 132910 TGCAAGCCCTCGTCCCTGGAAATGAGTTCGTTGCTGAAAGTCAAGCCGGGCATGAGGCCG 132969 |||| ||||||||| | | ||||| |||| ||| || | ||| |||||| | Sbjct 119681 TGCAGGCCCTCGTCGCGCGCTATGAGGGAGTTGGAGAACGTGAGGCCCTTCATGAGATTG 119622 Query 132970 CGTTTTTTGAGCCAAAATATGGCGGCGAAACTGCCCGAAAAGAAGACGCCCTCGACGGCC 133029 || || |||||| | | ||| |||||||||||| || | ||||||||| ||| Sbjct 119621 CGCTTGCGGAGCCAGTAGAGCGCGCAGAAACTGCCCGAGAACATGACGCCCTCCACGATG 119562 Query 133030 GCGAAAGCCACCAGGCGCTCGCCGAACGTGGCTTCTTTGCTGGCGATCCAGCGCAGCGCC 133089 ||||| |||||||||| | ||||||||| || | ||||||||| | ||||| Sbjct 119561 GCGAAGCAGACCAGGCGCTTGGCGAACGTGGAGTCGCGGTCGGCGATCCACTTCTGCGCC 119502 Query 133090 CATTCGGCCTTTTCTTTGACGCACGGCATCGTTTCGATGGCGTTCAACAAACGGAGTTTC 133149 || ||||||| | |||| ||| || || || || | ||||||| || | ||| Sbjct 119501 CACGCGGCCTTCTTCTTGATGCATGGGATGGTCTCCACTGCGTTCAGGGCGTGGCGCTTC 119442 Query 133150 TCTTCCGAGGAACGCACGTAGGTGTCGATGAGGGTCGAATACATTTCCGAGTGTACGTTC 133209 || | | | || | | ||||||| | ||| ||||| |||| ||||| | Sbjct 119441 TCAGCGGGGTCCCGGATGAAGGTGTCCAGGAGTAAGGAATAGCTTTCGCTGTGTAGCGAC 119382 Query 133210 TCCATGGCGATTTGAAAGCCGTAAAAGCACCGCGCCTCGACCACCTGCACTTCTTGAGCG 133269 || ||||| || || |||| || ||| |||||||| |||| || || | | Sbjct 119381 TCTATGGCCGCCTGGAACGCGTAGAAACACTGCGCCTCGGGGACCTTGACCTCGTTCATG 119322 Query 133270 AAACGCTCGACCAGATTTTCGTTGACGATGCCGTCGCTGGCGGCGAAAAAGGCCAGCACG 133329 || || || | ||| || |||||||||||| ||| || ||||| |||||||| | | Sbjct 119321 AAGCGATCCATCAGGTTCTCGTTGACGATGAAGTCCGAAGCCGCGAAGAAGGCCAGGATG 119262 Query 133330 TGCTTGATGAAATGGCGCTCGTTGTCGTTCAAGC---GCTCCCAGTC-GCG-CGT-GTCC 133383 | ||||||||| ||||||||| || ||| || |||||||||| || ||| | | Sbjct 119261 TTCTTGATGAACGTGCGCTCGTTCTCCGTCAGGCGGTGCTCCCAGTCATCGACGTCGCTC 119202 Query 133384 TTGGACAGGTCCACCTCCTCGACGGTCCAAAACGACGCCTCGGCTTTTTTGTACATACTC 133443 ||| || || | ||| ||||||||||| |||| | | ||||| | ||||| || | Sbjct 119201 TTG---AGATCGATCTCGTCGACGGTCCAGAACGCGGACACGGCTCTCTTGTAGATCTCC 119145 Query 133444 CACATGTCCGAATATTGTATGGGAAAAATCACAAACCGGCGGGGGTTTTCGCGCAACAGC 133503 || ||||||| || || || |||| | ||| |||| | | | || ||| |||| Sbjct 119144 CAGATGTCCGGGTACTGGATCGGAAGCAGCACGTACCGTCTCGAG---TCCTGCAGCAGC 119088 Query 133504 GGCTC 133508 ||||| Sbjct 119087 GGCTC 119083 Score = 196 bits (216), Expect = 5e-45 Identities = 410/605 (68%), Gaps = 12/605 (2%) Strand=Plus/Minus Query 132910 TGCAAGCCCTCGTCCCTGGAAATGAGTTCGTTGCTGAAAGTCAAGCCGGGCATGAGGCCG 132969 |||| ||||||||| | | ||||| |||| ||| || | ||| |||||| | Sbjct 121593 TGCAGGCCCTCGTCGCGCGCTATGAGGGAGTTGGAGAACGTGAGGCCCTTCATGAGATTG 121534 Query 132970 CGTTTTTTGAGCCAAAATATGGCGGCGAAACTGCCCGAAAAGAAGACGCCCTCGACGGCC 133029 || || |||||| | | ||| |||||||||||| || | ||||||||| ||| Sbjct 121533 CGCTTGCGGAGCCAGTAGAGCGCGCAGAAACTGCCCGAGAACATGACGCCCTCCACGATG 121474 Query 133030 GCGAAAGCCACCAGGCGCTCGCCGAACGTGGCTTCTTTGCTGGCGATCCAGCGCAGCGCC 133089 ||||| |||||||||| | ||||||||| || | ||||||||| | ||||| Sbjct 121473 GCGAAGCAGACCAGGCGCTTGGCGAACGTGGAGTCGCGGTCGGCGATCCACTTCTGCGCC 121414 Query 133090 CATTCGGCCTTTTCTTTGACGCACGGCATCGTTTCGATGGCGTTCAACAAACGGAGTTTC 133149 || ||||||| | |||| ||| || || || || | ||||||| || | ||| Sbjct 121413 CACGCGGCCTTCTTCTTGATGCATGGGATGGTCTCCACTGCGTTCAGGGCGTGGCGCTTC 121354 Query 133150 TCTTCCGAGGAACGCACGTAGGTGTCGATGAGGGTCGAATACATTTCCGAGTGTACGTTC 133209 || | | | || | | ||||||| | ||| ||||| |||| ||||| | Sbjct 121353 TCAGCGGGGTCCCGGATGAAGGTGTCCAGGAGTAAGGAATAGCTTTCGCTGTGTAGCGAC 121294 Query 133210 TCCATGGCGATTTGAAAGCCGTAAAAGCACCGCGCCTCGACCACCTGCACTTCTTGAGCG 133269 || ||||| || || |||| || ||| |||||||| |||| || || | | Sbjct 121293 TCTATGGCCGCCTGGAACGCGTAGAAACACTGCGCCTCGGGGACCTTGACCTCGTTCATG 121234 Query 133270 AAACGCTCGACCAGATTTTCGTTGACGATGCCGTCGCTGGCGGCGAAAAAGGCCAGCACG 133329 || || || | ||| || |||||||||||| ||| || ||||| |||||||| | | Sbjct 121233 AAGCGATCCATCAGGTTCTCGTTGACGATGAAGTCCGAAGCCGCGAAGAAGGCCAGGATG 121174 Query 133330 TGCTTGATGAAATGGCGCTCGTTGTCGTTCAAGC---GCTCCCAGTC-GCG-CGT-GTCC 133383 | ||||||||| ||||||||| || ||| || |||||||||| || ||| | | Sbjct 121173 TTCTTGATGAACGTGCGCTCGTTCTCCGTCAGGCGGTGCTCCCAGTCATCGACGTCGCTC 121114 Query 133384 TTGGACAGGTCCACCTCCTCGACGGTCCAAAACGACGCCTCGGCTTTTTTGTACATACTC 133443 ||| || || | ||| ||||||||||| |||| | | ||||| | ||||| || | Sbjct 121113 TTG---AGATCGATCTCGTCGACGGTCCAGAACGCGGACACGGCTCTCTTGTAGATCTCC 121057 Query 133444 CACATGTCCGAATATTGTATGGGAAAAATCACAAACCGGCGGGGGTTTTCGCGCAACAGC 133503 || ||||||| || || || |||| | ||| |||| | | | || ||| |||| Sbjct 121056 CAGATGTCCGGGTACTGGATCGGAAGCAGCACGTACCGTCTCGAG---TCCTGCAGCAGC 121000 Query 133504 GGCTC 133508 ||||| Sbjct 120999 GGCTC 120995 >seq106 Length=3132237 Score = 123 bits (136), Expect = 2e-23 Identities = 182/254 (72%), Gaps = 9/254 (4%) Strand=Plus/Plus Query 132880 TGCTTGAACATCAAGCAAGCAAAGTCGCAATGCAAGCCCTCGTCCCTGGAAATGAGTTCG 132939 || ||| ||| | ||| || |||||| |||| ||||||||| | || ||||| ||| Sbjct 1547873 TGGTTGTACAGGAGGCAGGCGAAGTCGGTGTGCAGGCCCTCGTCGCGCGAGATGAGCTCG 1547932 Query 132940 TTGCTGAAAGTCAAGCCGGGCATGAGGCCGCGTTTTTTGAGCCAAAATATGGCGGCGAAA 132999 ||| ||| || | |||||||||||| ||| || |||||||| || |||||| ||| Sbjct 1547933 TTGGAGAAGGTGAGGCCGGGCATGAGCAGGCGCTTCTTGAGCCAGAAGATGGCGCAGAAG 1547992 Query 133000 CTGCCCGAAAAGAAGACGCCCTCGACGGCCGCGAAAGCCACCAGGCGCTCGCCGAACGTG 133059 ||| ||| || |||||| ||| ||||| |||||||||||||| | || Sbjct 1547993 GAGCCGCTGAAGTGGATGCCCTCCACGCAGGCGAACGCCACCAGGCGCTCCGCAAA---- 1548048 Query 133060 GCTTCT-TTGCTGGCGATCCAGCGCAGCGCCCATTCGGCCTTTTCTTTG--ACGCACGGC 133116 ||| || |||| |||||||| || ||||||| | ||| ||||| | ||||| ||| Sbjct 1548049 GCTGCTGGCGCTGCCGATCCAGTGCTGCGCCCACTGCGCC--TTCTTGGCCACGCATGGC 1548106 Query 133117 ATCGTTTCGATGGC 133130 | ||| | | |||| Sbjct 1548107 AGCGTCTGGGTGGC 1548120 Score = 122 bits (134), Expect = 9e-23 Identities = 153/210 (73%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 38262 ACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACCGACAGCGTGCAAACGCTT 38321 || || || ||||| ||||||||| | || || ||| | | |||| | | ||| | Sbjct 2289122 ACTCTGACTGGCAAGACCATCACCCTTGAGGTGGAGTCTTCTGACACCATCGAAAATGTC 2289063 Query 38322 AAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAACAGCGGCTCATTTACGCG 38381 || || |||| ||||| ||||| |||||| | ||||| ||||| ||||| | ||| Sbjct 2289062 AAGTCCAAGATCCAGGACAAGGAGGGCATTCCCCCAGACCAGCAGCGCCTCATCTTCGCC 2289003 Query 38382 GGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAAAAGGAAGCGACG 38441 ||||| |||||||| || | |||||||| ||||||||||||||| ||||| | || Sbjct 2289002 GGCAAGCAGCTGGAGGATGGCCGCACCCTGGCCGACTACAACATCCAGAAGGAGTCTACC 2288943 Query 38442 CTGCATTTGGTGCTGCGTTTGAGAGGCGGC 38471 || || |||||||||| || | || ||| Sbjct 2288942 CTCCACCTGGTGCTGCGCCTGCGTGGTGGC 2288913 Score = 113 bits (124), Expect = 5e-20 Identities = 153/211 (73%), Gaps = 2/211 (1%) Strand=Plus/Minus Query 38262 ACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACCGACAGCGTGCA-AACGCT 38320 || ||||| ||||| |||||||| | || || ||| || | |||| | | | |||| | Sbjct 2288723 ACTCTCACTGGCAAGACCATCACGCTGGAGGTGGAGTCCTCTGACACCATCGAGAACG-T 2288665 Query 38321 TAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAACAGCGGCTCATTTACGC 38380 || || |||| ||||| ||||| || ||| | ||||| ||||| || || | || Sbjct 2288664 GAAGTCCAAGATCCAGGACAAGGAGGGCATCCCCCCGGACCAGCAGCGCCTGATCTTTGC 2288605 Query 38381 GGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAAAAGGAAGCGAC 38440 ||||| |||||||| || | |||||||| ||||||||||||||| ||||| | || Sbjct 2288604 CGGCAAGCAGCTGGAGGATGGCCGCACCCTGGCCGACTACAACATCCAGAAGGAGTCCAC 2288545 Query 38441 GCTGCATTTGGTGCTGCGTTTGAGAGGCGGC 38471 || || |||||||||| || | || ||| Sbjct 2288544 CCTCCACCTGGTGCTGCGCCTGCGTGGTGGC 2288514 Score = 104 bits (114), Expect = 2e-17 Identities = 151/211 (72%), Gaps = 2/211 (1%) Strand=Plus/Minus Query 38262 ACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACCGACAGCGTGCA-AACGCT 38320 || || || ||||| |||||||| | || || ||| || | |||| | | | |||| | Sbjct 2288270 ACTCTGACTGGCAAGACCATCACGCTGGAGGTGGAGTCCTCTGACACCATCGAGAACG-T 2288212 Query 38321 TAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAACAGCGGCTCATTTACGC 38380 || || |||| ||||| ||||| || ||| | ||||| ||||| || || | || Sbjct 2288211 GAAGTCCAAGATCCAGGACAAGGAGGGCATCCCCCCGGACCAGCAGCGCCTGATCTTTGC 2288152 Query 38381 GGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAAAAGGAAGCGAC 38440 ||||| |||||||| || | |||||||| |||||||||||||| ||||| | || Sbjct 2288151 CGGCAAGCAGCTGGAGGATGGCCGCACCCTGGCAGACTACAACATCCAGAAGGAGTCCAC 2288092 Query 38441 GCTGCATTTGGTGCTGCGTTTGAGAGGCGGC 38471 || || |||||||||| || | || ||| Sbjct 2288091 CCTCCACCTGGTGCTGCGCCTGCGTGGTGGC 2288061 >seq100 Length=2336451 Score = 123 bits (136), Expect = 2e-23 Identities = 149/199 (75%), Gaps = 4/199 (2%) Strand=Plus/Plus Query 38262 ACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACCGACAGCGTGCA-AACGCT 38320 || ||||| ||||| ||||||||| | || || ||| || | |||| | | | |||| Sbjct 981825 ACCCTCACTGGCAAGACCATCACCCTGGAGGTGGAGTCCTCTGACACCATCGAGAACG-- 981882 Query 38321 TAAAGAAAAA-ATCCTCGACAAAGAGGGAATTCCCGCCGACCAACAGCGGCTCATTTACG 38379 | |||| || |||| ||||| |||||||| ||| | ||||| ||||| || || | | Sbjct 981883 TGAAGAGCAAGATCCAGGACAAGGAGGGAATCCCCCCGGACCAGCAGCGCCTGATCTTTG 981942 Query 38380 CGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAAAAGGAAGCGA 38439 | ||||| |||||||| |||| ||||| || ||||||||||||||| ||||| | | Sbjct 981943 CCGGCAAGCAGCTGGAGGACGGCCGCACGCTGGCCGACTACAACATCCAGAAGGAGTCCA 982002 Query 38440 CGCTGCATTTGGTGCTGCG 38458 | || || |||||||||| Sbjct 982003 CCCTCCACCTGGTGCTGCG 982021 Score = 116 bits (128), Expect = 4e-21 Identities = 155/212 (73%), Gaps = 4/212 (2%) Strand=Plus/Plus Query 38262 ACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACCGACAGCGTGCA-AACGCT 38320 || ||||| ||||| |||||||| | || || ||| || | |||| | | | |||| Sbjct 981012 ACTCTCACTGGCAAGACCATCACACTGGAGGTGGAGTCCTCTGACACCATCGAGAACG-- 981069 Query 38321 TAAAGAAAAA-ATCCTCGACAAAGAGGGAATTCCCGCCGACCAACAGCGGCTCATTTACG 38379 | |||| || |||| ||||| ||||| ||||| | ||||| ||||| || || | | Sbjct 981070 TGAAGAGCAAGATCCAGGACAAGGAGGGCATTCCTCCGGACCAGCAGCGCCTGATCTTTG 981129 Query 38380 CGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAAAAGGAAGCGA 38439 | ||||| |||||||| || | ||||| || ||||||||||||||| ||||| | | Sbjct 981130 CCGGCAAGCAGCTGGAGGATGGCCGCACGCTGGCCGACTACAACATCCAGAAGGAGTCCA 981189 Query 38440 CGCTGCATTTGGTGCTGCGTTTGAGAGGCGGC 38471 | || || ||||||||||| || | || ||| Sbjct 981190 CCCTCCACCTGGTGCTGCGTCTGCGTGGTGGC 981221 Score = 116 bits (128), Expect = 4e-21 Identities = 155/212 (73%), Gaps = 4/212 (2%) Strand=Plus/Plus Query 38262 ACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACCGACAGCGTGCA-AACGCT 38320 || ||||| ||||| ||||||||| | || || ||| || | |||| | | | || | Sbjct 981419 ACCCTCACTGGCAAGACCATCACCCTGGAGGTGGAGTCCTCTGACACCATCGAGAATG-- 981476 Query 38321 TAAAGAAAAA-ATCCTCGACAAAGAGGGAATTCCCGCCGACCAACAGCGGCTCATTTACG 38379 | |||| || |||| ||||| |||||||| || | ||||| ||||| || || | | Sbjct 981477 TGAAGAGCAAGATCCAGGACAAGGAGGGAATCCCTCCGGACCAGCAGCGCCTGATCTTTG 981536 Query 38380 CGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAAAAGGAAGCGA 38439 | ||||| |||||||| || | ||||| || ||||||||||||||| ||||| | | Sbjct 981537 CCGGCAAGCAGCTGGAGGATGGCCGCACGCTGGCCGACTACAACATCCAGAAGGAGTCCA 981596 Query 38440 CGCTGCATTTGGTGCTGCGTTTGAGAGGCGGC 38471 | || || ||||||||||| || | || ||| Sbjct 981597 CCCTCCACCTGGTGCTGCGTCTGCGTGGTGGC 981628 Score = 102 bits (112), Expect = 8e-17 Identities = 152/212 (72%), Gaps = 4/212 (2%) Strand=Plus/Plus Query 38262 ACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACCGACAGCGTGCA-AACGCT 38320 || || || ||||| |||||||| | || || ||| || | |||| | | | |||| Sbjct 980610 ACCCTGACTGGCAAGACCATCACACTGGAGGTGGAGTCCTCTGACACCATCGAGAACG-- 980667 Query 38321 TAAAGAAAAA-ATCCTCGACAAAGAGGGAATTCCCGCCGACCAACAGCGGCTCATTTACG 38379 | |||| || |||| ||||| ||||| || || | ||||| ||||| || || | | Sbjct 980668 TGAAGAGCAAGATCCAGGACAAGGAGGGCATCCCTCCGGACCAGCAGCGTCTGATCTTTG 980727 Query 38380 CGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAAAAGGAAGCGA 38439 | ||||| |||||||| || | ||||| || ||||||||||||||| ||||| | | Sbjct 980728 CCGGCAAGCAGCTGGAGGATGGCCGCACACTGGCCGACTACAACATCCAGAAGGAGTCCA 980787 Query 38440 CGCTGCATTTGGTGCTGCGTTTGAGAGGCGGC 38471 | || || |||||||||| || | || ||| Sbjct 980788 CCCTCCACCTGGTGCTGCGCCTGCGTGGAGGC 980819 >seq102 Length=2901463 Score = 111 bits (122), Expect = 2e-19 Identities = 118/156 (76%), Gaps = 0/156 (0%) Strand=Plus/Minus Query 132894 GCAAGCAAAGTCGCAATGCAAGCCCTCGTCCCTGGAAATGAGTTCGTTGCTGAAAGTCAA 132953 ||| || |||||||| || | ||||||||| | ||| ||||| |||||| ||| || | Sbjct 1633785 GCAGGCGAAGTCGCAGTGGAGGCCCTCGTCGCGGGAGATGAGCTCGTTGGAGAAGGTGAG 1633726 Query 132954 GCCGGGCATGAGGCCGCGTTTTTTGAGCCAAAATATGGCGGCGAAACTGCCCGAAAAGAA 133013 |||| ||||||||||||| || |||||||| || | | | ||| ||||| ||||| Sbjct 1633725 GCCGTGCATGAGGCCGCGCTTCTTGAGCCAGAAGACGCTGCAGAAGCTGCCGCTGAAGAA 1633666 Query 133014 GACGCCCTCGACGGCCGCGAAAGCCACCAGGCGCTC 133049 || |||||| ||| || | |||||||| ||||| Sbjct 1633665 GATGCCCTCCACGCAGGCCCACGCCACCAGCCGCTC 1633630 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 500172137271040