Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Coccomyxa_20sp._20LA000219_20[genbank_20GCA_5F000812005.1_202015-01- 02] 106 sequences; 48,546,496 total letters Query= NC_014765.1 Length=198519 Score E Sequences producing significant alignments: (Bits) Value seq1 96.9 4e-15 seq87 82.4 1e-10 >seq1 Length=592023 Score = 96.9 bits (106), Expect = 4e-15 Identities = 155/219 (71%), Gaps = 8/219 (4%) Strand=Plus/Minus Query 7457 TCGAAATCTTCACCACCCAAGTGTGTATCCCCCGCGGTCGCTTTGACTTCAAAGATACCT 7516 ||||| || || || |||| ||| || || || ||||| || ||||| || ||||| || Sbjct 234461 TCGAAGTCCTCTCCGCCCAGGTGGGTGTCTCCGGCGGTGGCCTTGACCTCGAAGATGCCC 234402 Query 7517 CCTTCAATGTTTAACAACGAAACATCAAACGTACCACCACCCAGGTCAAAAATGAGTACG 7576 | || ||| | | || || ||||| || || || || |||||||| || ||||| ||| Sbjct 234401 TCCTCGATGGTCAGCAGGGACACATCGAAGGTGCCGCCGCCCAGGTCGAAGATGAGGACG 234342 Query 7577 TTCGTATCGTC----GTCTT--TGTTCTTATCGAGACCGTACGCGATAGCCGCCGCCGTT 7630 || | ||| | | | | | ||||| || || ||||| ||||| || ||||| || Sbjct 234341 TTGCTCTCGCCCACGGACGTGCTCTTCTTGTCCAGGCCGTAGGCGATGGCGGCCGCGGTG 234282 Query 7631 GGTTCATTAATAATACGAA-GACAGTTCAGGCCAGCAAT 7668 || || || || || || | ||| | ||||||||||| Sbjct 234281 GGCTCGTTGATGATTCGCATGACC-TCGAGGCCAGCAAT 234244 >seq87 Length=36794 Score = 82.4 bits (90), Expect = 1e-10 Identities = 125/176 (71%), Gaps = 3/176 (2%) Strand=Plus/Minus Query 127649 CTCAACGGCCAAGACAGATTCAAGGAACAAGGCGGTAAGTACTTTAACTCCGTCCAACCA 127708 ||||||||||| ||||| ||| | || | || |||||| ||| || || || Sbjct 17413 CTCAACGGCCACGACAGGTTCGACGAGCGTCTGGGCTCGTACTTCAACCTGGTGCAGCCC 17354 Query 127709 TACGTCCACCACTCTGCC-TCCCCAATGCCAGGGG--TCTACTCGTACTCTTTTGCACTC 127765 ||| |||||| | | |||||| ||| ||| || || |||||| || | |||| Sbjct 17353 TACCAGCACCACACCAACATCCCCAGGTCCAAGGGCATCAACGTGTACTCCTTCGGACTC 17294 Query 127766 AAGCCAGAAGAGCATCAACCAACGGGTACCTGCAACTTCTCTAGAATCGACAACGC 127821 ||||| || ||||| || || | || |||||||||||||| | ||||||||||| Sbjct 17293 AAGCCCGAGGAGCACCAGCCCTCCGGAACCTGCAACTTCTCCCGCATCGACAACGC 17238 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 635131958449040