Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Coccomyxa_20sp._20LA000219_20[genbank_20GCA_5F000812005.1_202015-01- 02] 106 sequences; 48,546,496 total letters Query= NC_014767.1 Length=184095 Score E Sequences producing significant alignments: (Bits) Value seq87 149 7e-31 seq94 86.0 7e-12 seq2 82.4 9e-11 >seq87 Length=36794 Score = 149 bits (164), Expect = 7e-31 Identities = 139/176 (79%), Gaps = 3/176 (2%) Strand=Plus/Minus Query 132045 CTCAACGGTCAGGACCGTTTCAAGGAGCAGAAGGGCAAGTACTTCAACCAGGTCCAGGCC 132104 |||||||| || ||| | ||| | |||| |||| ||||||||||| ||| ||| || Sbjct 17413 CTCAACGGCCACGACAGGTTCGACGAGCGTCTGGGCTCGTACTTCAACCTGGTGCAGCCC 17354 Query 132105 TACAACCACCACTCCGGTTGCCCCATGCCC---GGTATCTACTCGTACTCTTTCGCGCTC 132161 ||| | |||||| || ||||| | || || ||| || |||||| |||| ||| Sbjct 17353 TACCAGCACCACACCAACATCCCCAGGTCCAAGGGCATCAACGTGTACTCCTTCGGACTC 17294 Query 132162 AAGCCCGAGGAGCACCAGCCCACCGGCACCTGCAACTTCTCCCGCATCGACAACGC 132217 ||||||||||||||||||||| |||| ||||||||||||||||||||||||||||| Sbjct 17293 AAGCCCGAGGAGCACCAGCCCTCCGGAACCTGCAACTTCTCCCGCATCGACAACGC 17238 Score = 100 bits (110), Expect = 3e-16 Identities = 113/151 (75%), Gaps = 3/151 (2%) Strand=Plus/Minus Query 131662 ACTACGTCTACCTCGACACCGAGGAGCGCCGCCGCTTCGCCCAGAAGGGTCACGAGTACC 131721 ||||||||||||| |||||||| ||||||||| | ||||||||| |||||||||| Sbjct 17676 ACTACGTCTACCTGGACACCGACGAGCGCCGCAGGTTCGCCCAGGTCTCCCACGAGTACC 17617 Query 131722 TCATCGAGCAGGTCCAGCACACTGGTGTTGACACCGTGACCGAGGGCCAGGCCAAGCAGG 131781 | ||||||||| | ||| ||| || | || |||| || || | ||||| || Sbjct 17616 TGATCGAGCAGCTGCAGTTCACCGGCGGCGAGTCCGTCTCCCAG---AACGCCAACAAGA 17560 Query 131782 TCCGCCTCTCCTACAACCACCCCGTCAAGGA 131812 ||||||| || |||||||||||| || || Sbjct 17559 TCCGCCTGAACTTCAACCACCCCGTGAAAGA 17529 >seq94 Length=1310662 Score = 86.0 bits (94), Expect = 7e-12 Identities = 64/75 (85%), Gaps = 0/75 (0%) Strand=Plus/Plus Query 136709 CGTTCTTATAGCTCAGTTGGTTAGAGCGTGGTGCTTATAACGCCAAGGTCACGGGTTCGA 136768 || |||| ||||||||||||||||||||| ||||| ||||||| || ||||| ||||||| Sbjct 839883 CGGTCTTGTAGCTCAGTTGGTTAGAGCGTCGTGCTAATAACGCGAATGTCACAGGTTCGA 839942 Query 136769 GCCCCGTTGGGAACA 136783 |||| || ||| || Sbjct 839943 GCCCTGTCTGGACCA 839957 Score = 86.0 bits (94), Expect = 7e-12 Identities = 64/75 (85%), Gaps = 0/75 (0%) Strand=Plus/Plus Query 136709 CGTTCTTATAGCTCAGTTGGTTAGAGCGTGGTGCTTATAACGCCAAGGTCACGGGTTCGA 136768 || |||| ||||||||||||||||||||| ||||| ||||||| || ||||| ||||||| Sbjct 845303 CGGTCTTGTAGCTCAGTTGGTTAGAGCGTCGTGCTAATAACGCGAATGTCACAGGTTCGA 845362 Query 136769 GCCCCGTTGGGAACA 136783 |||| || ||| || Sbjct 845363 GCCCTGTCTGGACCA 845377 >seq2 Length=534433 Score = 82.4 bits (90), Expect = 9e-11 Identities = 120/170 (71%), Gaps = 0/170 (0%) Strand=Plus/Minus Query 110272 ACATATTTGGGGAGAGCAATAGACGCAAGATTGCACACAGAAGTCTCGTCTTTGTCGGTG 110331 |||||| ||||||||||| || || | |||||| |||| ||||| || ||| Sbjct 280821 ACATATCGTGGGAGAGCAATTGATGCCAAATTGCATACAGCTGTCTCTTCAGCAGATGTG 280762 Query 110332 TATTCCAAAATTTCCGTACACAAGTTGGAACTCTTAATGACACCCAAGTTCTTCTGATTC 110391 || |||| ||| || || || | ||| | ||| ||| |||| |||| |||||| Sbjct 280761 TACTCCACAATCTCAGTGCAGAGATTGCTGCACTTGATGGTGCCCAGATTCTGCTGATTT 280702 Query 110392 GATTTGGAGTTGCATGCATCCTTATAGAGCATGTATGGGGTACCAGTTTC 110441 || || |||||| | ||||| ||||||||||||||| | || || || Sbjct 280701 GACTTCCTGTTGCAGGAGTCCTTGTAGAGCATGTATGGGTTGCCTGTCTC 280652 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 588975219606800