Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Coccomyxa_20sp._20LA000219_20[genbank_20GCA_5F000812005.1_202015-01- 02] 106 sequences; 48,546,496 total letters Query= NC_015279.1 Length=190789 Score E Sequences producing significant alignments: (Bits) Value seq18 856 0.0 seq17 589 3e-163 >seq18 Length=145863 Score = 856 bits (948), Expect = 0.0 Identities = 787/993 (79%), Gaps = 2/993 (0%) Strand=Plus/Minus Query 179739 TGGGATAACTTCTGCGAGTGGGTAACCTCTACCAATAACCGCCTCTATGTCGGTTGGTTC 179798 |||| | |||||| || ||||| || || | |||||||| || | |||||||| Sbjct 120640 TGGGCTCGCTTCTGTGAATGGGTTACTAGCACTGAAAACCGCCTTTACATTGGTTGGTTT 120581 Query 179799 GGCGTTCTGATGATTCCAACTCTGTTGGCAGCAACTATCTGC-TTCATCGTCGCCTTCAT 179857 || ||||| ||||| || ||||| || | |||||| |||| ||||| |||| || | Sbjct 120580 GGTGTTCTAATGATCCCTACTCTTTTAACTGCAACT-TCTGTGTTCATTATCGCATTTGT 120522 Query 179858 CGCTGCTCCCCCTGTGGACATCGATGGCATCCGTGAACCCGTCGCTGGTTCACTCATGTA 179917 ||||| || ||||| ||||||||||| |||||||| || || | ||||| || | || Sbjct 120521 TGCTGCACCTCCTGTAGACATCGATGGTATCCGTGAGCCTGTATCAGGTTCTCTACTTTA 120462 Query 179918 TGGTAACAACATCATCTCTGGTGCAGTTGTTCCTTCTTCCAACGCAATTGGTCTTCACTT 179977 |||||||||||||| |||||||| ||||||||| | || |||||||||||||| ||||| Sbjct 120461 CGGTAACAACATCATTTCTGGTGCTGTTGTTCCTACATCAAACGCAATTGGTCTGCACTT 120402 Query 179978 CTATCCCATCTGGGAAGCCGCATCGCTTGACGAGTGGCTGTATAACGGTGGTCCTTTCCA 180037 ||| || || |||||||| || || |||||||| ||||| || ||||||||||||| ||| Sbjct 120401 CTACCCAATTTGGGAAGCTGCTTCACTTGACGAATGGCTTTACAACGGTGGTCCTTACCA 120342 Query 180038 ACTTGTCGTCTTCCACTTCCTGATTGGCATCTATGCCTACATGGGTCGTGAGTGGGAACT 180097 ||| |||| | |||||| | | ||||| | |||||||||||||||||||||||| Sbjct 120341 ACTAATCGTATGTCACTTCTTCCTAGGCATTTGCTGCTACATGGGTCGTGAGTGGGAACT 120282 Query 180098 TTCTTATCGCTTGGGTATGCGCCCCTGGATCTGCGTAGCATATTCTGCTCCAGTCGCTGC 180157 ||||| || || || ||||| || |||||| ||||| || ||||| ||||| || || Sbjct 120281 TTCTTTCCGTTTAGGAATGCGTCCATGGATCGCTGTAGCTTACTCTGCACCAGTTGCAGC 120222 Query 180158 AGCATCTGCTGTATTCCTCGTCTATCCTTTCGGTCAAGGTTCATTCTCTGACGCAATGCC 180217 || ||||||||||| || |||| ||| ||||||||||||||||||| || | ||||| Sbjct 120221 TGCTACTGCTGTATTCATCATCTACCCTATCGGTCAAGGTTCATTCTCAGATGGTATGCC 120162 Query 180218 CCTCGGCATTTCTGGCACCTTCAACTACATGCTTGTTTTCCAAGCAGAGCACAACATCCT 180277 | || ||||| || || ||||||| |||| ||||||||||||| |||||||||||||| Sbjct 120161 TTTGGGTATTTCAGGAACTTTCAACTTCATGATTGTTTTCCAAGCTGAGCACAACATCCT 120102 Query 180278 GATGCACCCCTTCCACATGCTGGGAGTAGCAGGTGTCTTCGGCGGTTCACTGTTCTCCGC 180337 |||||||| ||||||||||| || || || ||||| ||||| |||||||| ||||| || Sbjct 120101 TATGCACCCATTCCACATGCTTGGTGTTGCTGGTGTGTTCGGTGGTTCACTTTTCTCAGC 120042 Query 180338 AATGCACGGTTCACTGGTTACCTCTTCACTGGTTCGTGAAACCACTGAAACTGAGTCCCA 180397 ||||||||||| || || || |||||||| | |||||||| ||||| | || || Sbjct 120041 TATGCACGGTTCTCTAGTAACTTCTTCACTTATCCGTGAAACTACTGAGAACGAATCAGC 119982 Query 180398 GAACTACGGTTACAAGTTTGGTCAAGAAGAAGAGACCTACAACATCGTTGCTGCACATGG 180457 ||| |||||||| || |||||||||||||| || |||||||| ||||||||||| || Sbjct 119981 AAACGCTGGTTACAAATTCGGTCAAGAAGAAGAAACTTACAACATTGTTGCTGCACACGG 119922 Query 180458 ATACTTCGGTCGTCTGATCTTCCAGTATGCATCGTTCAACAACTCCCGTTCACTTCACTT 180517 ||||| |||||||| |||||||| || || || ||||||||||| |||||||||||||| Sbjct 119921 TTACTTTGGTCGTCTAATCTTCCAATACGCTTCATTCAACAACTCTCGTTCACTTCACTT 119862 Query 180518 CTTCCTGGCAGCATGGCCTGTCGTTGGCATCTGGTTCACTGCACTGGGCGTAAGCACCAT 180577 |||||| || || |||||||| ||||| |||||||| ||||| || || | || || Sbjct 119861 CTTCCTTGCTGCTTGGCCTGTAGTTGGTATCTGGTTTACTGCTCTTGGTATCTCTACTAT 119802 Query 180578 GGCATTCAACCTCAACGGTTTCAACTTCAACCAGTCCATCATTGATGGTCAAGGTCGTGT 180637 |||||||||||| ||||| ||||||||||||||||| | | || ||||||||| || Sbjct 119801 GGCATTCAACCTTAACGGATTCAACTTCAACCAGTCAGTTGTAGACTCTCAAGGTCGCGT 119742 Query 180638 GCTCAACACTTGGGCAGACGTACTCAACCGCGCTGGTCTGGGTATGGAAGTTATGCACGA 180697 |||||||||||| ||| | ||||||| || || ||||||||||| |||||||| Sbjct 119741 TATCAACACTTGGGGTGACATCATCAACCGTGCCAACCTTGGTATGGAAGTAATGCACGA 119682 Query 180698 GCGTAATGCTCACAACTTCCCACTTGACCTGGC 180730 | || || |||||||||||||| ||||| || Sbjct 119681 AAGAAACGCACACAACTTCCCACTAGACCTTGC 119649 >seq17 Length=88650 Score = 589 bits (652), Expect = 3e-163 Identities = 742/1010 (73%), Gaps = 18/1010 (2%) Strand=Plus/Minus Query 181436 GATGACTGGCTTAAACGCGACCGCTTTGTCTTTGTGGGCTGGTCTGGACTACTTCTTTTT 181495 ||||||||| | || || || ||||| || || ||||||||||| || | || || Sbjct 87615 GATGACTGGTTGCGCCGTGAACGATTTGTGTTCGTTGGCTGGTCTGGTCTGTTACTCTTC 87556 Query 181496 CCCACTGCTTATCTTGCAATTGGGGGCTGGCTCACTGGCACTACTTTTGTTACGTCGTGG 181555 || || ||||| |||||| | || |||||| | || || || || || ||||| || ||| Sbjct 87555 CCTACAGCTTACCTTGCATTAGGTGGCTGGTTGACAGGAACCACATTCGTTACATCTTGG 87496 Query 181556 TACACCCACGGATTGGCGTCTTCCTACCTTGAGGG-TGCTAATTTCCTTACAGCGGCTGT 181614 ||||| || ||| | || ||| ||| | || || ||| || ||| | ||||| || || Sbjct 87495 TACACACATGGACTTGCAAGTTCTTACTTAGAAGGATGC-AACTTCTTAACAGCAGCCGT 87437 Query 181615 GTCAACGCCTGCTGACGCTATGGGTCATTC--TCTTCTTCTACTTTGGGGTCCTGAAGCT 181672 ||||| || || || |||||||| || | || ||| || ||||| ||||| || Sbjct 87436 TTCAACTCCAGCAAACAGCATGGGTCACTCATTGTTGTTC--CTATGGGGGCCTGAGGCA 87379 Query 181673 CAGGGCGATTTCGTCCGCTGG-GTCCAACTTGGG-GGACTCTGGGCTTTTGTGGCGCTCC 181730 || || || || |||||| ||| | ||||| || || |||||||| || || | | Sbjct 87378 CAAGGTGACTTTACTCGCTGGTGTC--AGTTGGGTGGTCTGTGGGCTTTCGTAGCTTTAC 87321 Query 181731 ACGGAGCCTTCGCTCTTATCGGTTTTATGCTCAGGCAATTTGAACTTGCTCGTCTAATCG 181790 | || ||||| || ||||| || |||||||| | || ||||||||||| | |||| Sbjct 87320 ATGGTGCCTTTGCGCTTATTGGGTTTATGCTACGACAGTTTGAACTTGCAAG----ATCG 87265 Query 181791 GAA----TCCGACCCTACAATGCGATTGCTTTTTCCGGTCCTATTGCTGTATTCGTCTCT 181846 | | | || || ||||| || ||||| || || | ||||||||||| ||||| || Sbjct 87264 GTAAAGCTTCGTCCTTACAACGCTATTGCCTTCTCAGCACCTATTGCTGTCTTCGTATCA 87205 Query 181847 GTATTTCTCATCTATCCTCTGGGACAATCCAGTTGGTTCTTTGCGCCGAGTTTCGGTGTC 181906 || || || ||||||||| |||||||||| | |||||||||||||| || || ||||| Sbjct 87204 GTCTTCCTTATCTATCCTTTGGGACAATCAGGCTGGTTCTTTGCGCCTAGCTTTGGTGTA 87145 Query 181907 GCGGCGATTTTCCGCTTCCTTCTCTTCCTCCAGGGCTTTCATAATTGGACGCTCAATCCC 181966 ||||| || ||||| || |||| ||| |||| || || || || |||||||| || || Sbjct 87144 GCGGCAATCTTCCGATTTATTCTTTTCTTCCAAGGTTTCCACAACTGGACGCTTAACCCT 87085 Query 181967 TTCCATATGATGGGTGTTGCTGGTATCCTGGGTGGCGCATTACTCTCTGCAATTCACGGT 182026 ||||| ||||||||||| || ||| | || |||| ||| | || | |||||||||||| Sbjct 87084 TTCCACATGATGGGTGTGGCAGGTGTTCTAGGTGCTGCACTTCTATGTGCAATTCACGGA 87025 Query 182027 GTGACCGTGGAGAATACTCTGTATCAAGACGGTGACCAAGCAAATACTTTCAAAGCATTC 182086 | || || ||||| ||||| | | |||| |||||| || || |||||| |||||| Sbjct 87024 GCAACAGTAGAGAACACTCTTTTTGAAGATGGTGACGGTGCGAACACTTTCCGTGCATTC 86965 Query 182087 GATTCAACTCAAGAAGAAGAAACCTATTCAATGGTTACAGCGAACCGCTTCTGGTCTCAG 182146 | |||| |||| ||||| || || || ||||| ||||| ||||| || ||||| || Sbjct 86964 AACCCAACGCAAGCCGAAGAGACATACTCTATGGTAACAGCTAACCGTTTTTGGTCACAA 86905 Query 182147 ATCTTCGGTATTGCGTTTAGCAATAAGAGGTGGTTGCATTTCTTTATGCTCTTTGTTCCT 182206 ||||| ||| | || || || || | ||| | |||||||||||||| ||||| ||| Sbjct 86904 ATCTTTGGTGTAGCTTTCTCAAACAAACGTTGGCTTCATTTCTTTATGCTTTTTGTCCCT 86845 Query 182207 GTTATGGGTCTTTGGACAAGTTCCATCGGTATTATTGGTCTTGCTCTCAACCTTCGTGCT 182266 || | |||||||||| ||| | || ||| |||| || |||||||| ||| | || || Sbjct 86844 GTAACTGGTCTTTGGATGAGTGCAATTGGTGTTATCGGACTTGCTCTTAACTTACGAGCA 86785 Query 182267 TATGACTTTGTATCCCAAGAAATCAGAGCATCAGAAGACCCAGAGTTCGAGACGTTCTAC 182326 ||||||||||| || ||||| ||| | ||| | || ||||| || |||||||| |||||| Sbjct 86784 TATGACTTTGTTTCACAAGAGATCCGTGCAGCTGAGGACCCTGAATTCGAGACTTTCTAC 86725 Query 182327 ACAAAGAACATTCTCTTGAATGAAGGTCTGCGTGCATGGTTAGCACCAGTCGATCAACCA 182386 ||||| |||||||| | || |||||| | | |||||| | || | || || ||| Sbjct 86724 ACAAAAAACATTCTTCTAAACGAAGGTATTAGAGCATGGATGGCGGCTCAGGACCAGCCA 86665 Query 182387 CATGAGAACTTTGTGTTCCCTGAGGAAGTATTACCCAGAGGTAACGCACT 182436 ||||| || |||| ||||| ||||| || ||||| | || ||||| || Sbjct 86664 CATGAAAAACTTGTATTCCCAGAGGAGGTTTTACCACGTGGAAACGCTCT 86615 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 610395991224240