Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Coccomyxa_20sp._20LA000219_20[genbank_20GCA_5F000812005.1_202015-01- 02] 106 sequences; 48,546,496 total letters Query= NC_015280.1 Length=181044 Score E Sequences producing significant alignments: (Bits) Value seq18 693 0.0 seq17 479 3e-130 >seq18 Length=145863 Score = 693 bits (768), Expect = 0.0 Identities = 728/949 (77%), Gaps = 6/949 (1%) Strand=Plus/Minus Query 169442 TTGGTTGGTTTGGTGTTCTAATGATTCCATGCT-TACTCACAGCAGCAGCATGT-TTCAT 169499 ||||||||||||||||||||||||| || | || | | || ||| | | ||| ||||| Sbjct 120591 TTGGTTGGTTTGGTGTTCTAATGATCCC-TACTCTTTTAACTGCAACTTC-TGTGTTCAT 120534 Query 169500 CGTTGCATTCATTGCAGCACCTCCTGTCGATATCGACGGAATCAGAGAACCAGTAGCGGG 169559 | ||||| |||| ||||||||||| || ||||| || ||| | || || ||| | || Sbjct 120533 TATCGCATTTGTTGCTGCACCTCCTGTAGACATCGATGGTATCCGTGAGCCTGTATCAGG 120474 Query 169560 TTCTTTCTTGTATGGTAACAACATCATCTCTGGTGCAGTTGTTCCATCATCAAACGCTAT 169619 |||| | | || |||||||||||||| |||||||| |||||||| |||||||||| || Sbjct 120473 TTCTCTACTTTACGGTAACAACATCATTTCTGGTGCTGTTGTTCCTACATCAAACGCAAT 120414 Query 169620 CGGACTACACTTCTACCCAATCTGGGAAGCAGCAACTGTTGATGAATGGTTGTATAATGG 169679 || || |||||||||||||| |||||||| || | |||| |||||| | || || || Sbjct 120413 TGGTCTGCACTTCTACCCAATTTGGGAAGCTGCTTCACTTGACGAATGGCTTTACAACGG 120354 Query 169680 TGGTCCTTATCAGTTGGTAATCTTCCACTTCCTTATTGGTATCT-CAGCATACATGGGAA 169738 ||||||||| || | | | | |||||| | | || || | | || |||||||| Sbjct 120353 TGGTCCTTACCAACTAATCGTATGTCACTTCTTCCTAGGCATTTGCTGC-TACATGGGTC 120295 Query 169739 GACAGTGGGAACTATCATACAGATTAGGAATGCGTCCTTGGATCTGTGTTGCATACTCTG 169798 | |||||||||| || | | | |||||||||||||| |||||| ||| || ||||||| Sbjct 120294 GTGAGTGGGAACTTTCTTTCCGTTTAGGAATGCGTCCATGGATCGCTGTAGCTTACTCTG 120235 Query 169799 CACCAGTATCTGCTGCATTCGCTGTATTCTTAGTATACCCATTTGGTCAGGGTTCATTCT 169858 ||||||| | ||||| ||||||||| | | ||||| | ||||| |||||||||| Sbjct 120234 CACCAGTTGCAGCTGCTACTGCTGTATTCATCATCTACCCTATCGGTCAAGGTTCATTCT 120175 Query 169859 CTGATGGTATGCCACTAGGTATCTCAGGTACTTTCAACTTTATGTTCGTTTTCCAAGCAG 169918 | ||||||||||| | ||||| ||||| ||||||||||| ||| | ||||||||||| | Sbjct 120174 CAGATGGTATGCCTTTGGGTATTTCAGGAACTTTCAACTTCATGATTGTTTTCCAAGCTG 120115 Query 169919 AGCATAACATTCTAATGCATCCTTTCCACATGGCAGGAGTAGCAGGAATGTTCGGAGGAT 169978 |||| ||||| || ||||| || ||||||||| || || || || ||||||| || | Sbjct 120114 AGCACAACATCCTTATGCACCCATTCCACATGCTTGGTGTTGCTGGTGTGTTCGGTGGTT 120055 Query 169979 CTTTATTCTCAGCAATGCATGGTTCACTTGTTACTTCATCTCTAATCAGAGAAACAACAG 170038 | | |||||||| ||||| ||||| || || ||||| || || ||| | ||||| || | Sbjct 120054 CACTTTTCTCAGCTATGCACGGTTCTCTAGTAACTTCTTCACTTATCCGTGAAACTACTG 119995 Query 170039 AGCAAGAGTCACAGAACTATGGTTATAAGTTCGGACAAGAAGAAGAAACATACAACATAG 170098 || | || ||| ||| |||||| || ||||| |||||||||||||| |||||||| | Sbjct 119994 AGAACGAATCAGCAAACGCTGGTTACAAATTCGGTCAAGAAGAAGAAACTTACAACATTG 119935 Query 170099 TAGCAGCACACGGTTACTTTGGTCGTCTTATCTTCCAGTATGCTTCATTCAACAACTCAA 170158 | || ||||||||||||||||||||||| |||||||| || ||||||||||||||||| Sbjct 119934 TTGCTGCACACGGTTACTTTGGTCGTCTAATCTTCCAATACGCTTCATTCAACAACTCTC 119875 Query 170159 GAAGTCTACACTTCTTCCTAGCAGTTTTCCCTGTTGTATGTGTATGGTTAACCTCTATGG 170218 | || ||||||||||| || | || ||||| || || | ||||| || || | | Sbjct 119874 GTTCACTTCACTTCTTCCTTGCTGCTTGGCCTGTAGTTGGTATCTGGTTTACTGCTCTTG 119815 Query 170219 GTATCTGCACAATGGCATTCAACTTGAATGGTTTCAACTTTAACCAATCAGTTGTTGATG 170278 |||||| || |||||||||||| | || || |||||||| ||||| |||||||| || Sbjct 119814 GTATCTCTACTATGGCATTCAACCTTAACGGATTCAACTTCAACCAGTCAGTTGTAGACT 119755 Query 170279 CTAACGGAAAAATCGTCCCAACATGGGGTGATGTTCTAAACAGAGCAAACTTGGGTATGG 170338 || | || | || || |||||||| | | ||| | || ||| | ||||||| Sbjct 119754 CTCAAGGTCGCGTTATCAACACTTGGGGTGACATCATCAACCGTGCCAACCTTGGTATGG 119695 Query 170339 AAGTTATGCATGAAAGAAATGCACACAACTTCCCACTAGACCTAGCATC 170387 |||| ||||| |||||||| ||||||||||||||||||||||| || || Sbjct 119694 AAGTAATGCACGAAAGAAACGCACACAACTTCCCACTAGACCTTGCTTC 119646 >seq17 Length=88650 Score = 479 bits (530), Expect = 3e-130 Identities = 736/1046 (70%), Gaps = 29/1046 (3%) Strand=Plus/Minus Query 170525 TTGGTTTGATGTTCTTGACGACTGGTTAAAGAGAGATCGTTTTGTATTCATAGGATGGTC 170584 ||||||||||| | || |||||||| | || || ||||| ||| | || ||||| Sbjct 87631 TTGGTTTGATGAAGTAGATGACTGGTTGCGCCGTGAACGATTTGTGTTCGTTGGCTGGTC 87572 Query 170585 TGGTCTTTTACTTCTGCCTTGTGCATACCTATCAATCGGTGGTTGGTTCTTAGGGACTAC 170644 |||||| ||||| | ||| || ||||| || | ||||| ||||| ||| || || Sbjct 87571 TGGTCTGTTACTCTTCCCTACAGCTTACCTTGCATTAGGTGGCTGGTTGACAGGAACCAC 87512 Query 170645 CTTCGTTACATCATGGTATACACATGGTGTTGCTTCCTCATATCTTGAGGGATGTAACTT 170704 ||||||||||| ||||| |||||||| |||| || || | || ||||| ||||| Sbjct 87511 ATTCGTTACATCTTGGTACACACATGGACTTGCAAGTTCTTACTTAGAAGGATGCAACTT 87452 Query 170705 CCTAACAGCAGCAGTTTCCACACCTGGCGACGCAATGGGTCATAGTCTTCTGTTCCTTTG 170764 | |||||||||| ||||| || || | || |||||||| | ||||||| || Sbjct 87451 CTTAACAGCAGCCGTTTCAACTCCAGCAAACAGCATGGGTCACTCATTGTTGTTCCTATG 87392 Query 170765 GGGACCTGAAGCACAAGGTTCATTTGTTCGTTGGTTACAACTCGGAGGTTTATGGAACTT 170824 ||| ||||| ||||||||| ||| ||| |||| || | || ||| | ||| || Sbjct 87391 GGGGCCTGAGGCACAAGGTGACTTTACTCGCTGGTGTCAGTTGGGTGGTCTGTGGGCTTT 87332 Query 170825 TGTAGCATTACATGGAGTCTTTGGACTCATAGGTTTCATGCTCAGACAATTTGAGATCGC 170884 ||||| |||||||| | ||||| || || || || ||||| |||| ||||| | || Sbjct 87331 CGTAGCTTTACATGGTGCCTTTGCGCTTATTGGGTTTATGCTACGACAGTTTGAACTTGC 87272 Query 170885 AGGACTTGTAG-GCATCAGACCTTACAACGCACTCGCATTCTCTGCTGTTATCGCAGTCT 170943 | || ||| || || | ||||||||||| | || ||||| || ||| || |||| Sbjct 87271 AAGATCGGTAAAGCTTC-GTCCTTACAACGCTATTGCCTTCTCAGCACCTATTGCTGTCT 87213 Query 170944 TCACTAGCA-TCTTTCTGATCTATCCACTAGGTCAGCACAGTTGGTTCTTCGCACCATCA 171002 || || || |||| || |||||||| | || || | |||||||| || || Sbjct 87212 TCG-TATCAGTCTTCCTTATCTATCCTTTGGGACAATCAGGCTGGTTCTTTGCGCCTAGC 87154 Query 171003 TTCGGTGTCGCAGCAATTTTTCGTTATATCTTATTCATACAAGGTTTCCACAACATTACA 171062 || ||||| || ||||| || || | ||| | ||| | ||||||||||||||| || Sbjct 87153 TTTGGTGTAGCGGCAATCTTCCGATTTATTCTTTTCTTCCAAGGTTTCCACAACTGGACG 87094 Query 171063 TTGAATCCATTTCACATGATGGGTGTTGCAGGAATACTAGGTGGAGCATTATTATGTGCC 171122 | || || || |||||||||||||| ||||| | ||||||| ||| | ||||||| Sbjct 87093 CTTAACCCTTTCCACATGATGGGTGTGGCAGGTGTTCTAGGTGCTGCACTTCTATGTGCA 87034 Query 171123 ATTCATGGTGCAACAGTGCAGAACACATTGTATGAAGACACATCAGTTTATACTGATAAT 171182 ||||| || |||||||| ||||||| | | |||||| | | | || || Sbjct 87033 ATTCACGGAGCAACAGTAGAGAACACTCTTTTTGAAGA------TGGTGACGGTGCGAA- 86981 Query 171183 AAAATTCAAAGCACAACATTCCGTGCCTTTGATCCTACACAGGAAGAAGAAACTTACAGT 171242 || |||||||| || | || || || | ||||| || ||| | Sbjct 86980 --------------CACTTTCCGTGCATTCAACCCAACGCAAGCCGAAGAGACATACTCT 86935 Query 171243 ATGATTACAGCAAACAGATTCTGGTCACAGATATTTGGTATTGCTTTCTCTAACAAAAGA 171302 ||| | ||||| ||| | || |||||||| || |||||| | |||||||| |||||| | Sbjct 86934 ATGGTAACAGCTAACCGTTTTTGGTCACAAATCTTTGGTGTAGCTTTCTCAAACAAACGT 86875 Query 171303 TTTTTACACTTCCTTATGTTGTTCGTTCCTGTCATGGGTATGTGGACATCATCTATAGGT 171362 | | || ||| ||||| | || || ||||| | ||| | |||| | || ||| Sbjct 86874 TGGCTTCATTTCTTTATGCTTTTTGTCCCTGTAACTGGTCTTTGGATGAGTGCAATTGGT 86815 Query 171363 ATCGTAGGTCTAGCACTTAACCTCAGAGCATACGATTTTGTATCTCAAGAGATAAGAGCA 171422 | | || || || |||||| | ||||||| || ||||| || |||||||| | ||| Sbjct 86814 GTTATCGGACTTGCTCTTAACTTACGAGCATATGACTTTGTTTCACAAGAGATCCGTGCA 86755 Query 171423 GCAGAAGACCCAGAGTTCGAGACTTTCTACACTAAGAATATACTTCTTAATGAAGGTATG 171482 || || ||||| || ||||||||||||||||| || || || ||||| || |||||||| Sbjct 86754 GCTGAGGACCCTGAATTCGAGACTTTCTACACAAAAAACATTCTTCTAAACGAAGGTATT 86695 Query 171483 AGAGCATGGATGTC--ATCAGTTGACCAACCACATGAGAACTTCGTATTCCCAGAAGAAG 171540 |||||||||||| | |||| ||||| |||||||| || | ||||||||||| || | Sbjct 86694 AGAGCATGGATGGCGGCTCAG--GACCAGCCACATGAAAAACTTGTATTCCCAGAGGAGG 86637 Query 171541 TGTTACCAAGAGGTAACGCACTTTAA 171566 | |||||| | || ||||| |||||| Sbjct 86636 TTTTACCACGTGGAAACGCTCTTTAA 86611 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 579212032543040