Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Coccomyxa_20sp._20LA000219_20[genbank_20GCA_5F000812005.1_202015-01- 02] 106 sequences; 48,546,496 total letters Query= NC_015281.1 Length=179563 Score E Sequences producing significant alignments: (Bits) Value seq18 765 0.0 seq17 536 1e-147 >seq18 Length=145863 Score = 765 bits (848), Expect = 0.0 Identities = 767/988 (78%), Gaps = 8/988 (1%) Strand=Plus/Minus Query 167863 TTCTGCGAGTGGGTAACATCAACTAACAACCGCCTCTATGTCGGTTGGTTCGGCGTACTG 167922 ||||| || ||||| || ||| | |||||||| || | |||||||| || || || Sbjct 120631 TTCTGTGAATGGGTTACTAGCACTGAAAACCGCCTTTACATTGGTTGGTTTGGTGTTCTA 120572 Query 167923 ATGATTCCAACTCTGTTGGCAGCAACTATCTGT-TTCATCGTCGCCTTCGTCGCTGCTCC 167981 ||||| || ||||| || | |||||| ||||| ||||| |||| || || ||||| || Sbjct 120571 ATGATCCCTACTCTTTTAACTGCAACT-TCTGTGTTCATTATCGCATTTGTTGCTGCACC 120513 Query 167982 CCCTGTGGACATCGACGGCATCCGTGAACCCGTCGCTGGTTCACTCATGTATGGTAACAA 168041 ||||| |||||||| || |||||||| || || | ||||| || | || |||||||| Sbjct 120512 TCCTGTAGACATCGATGGTATCCGTGAGCCTGTATCAGGTTCTCTACTTTACGGTAACAA 120453 Query 168042 CATCATCTCTGGTGCAGTTGTCCCTTCTTCTAATGCTATTGGACTTCACTTCTATCCCAT 168101 |||||| |||||||| ||||| ||| | || || || ||||| || |||||||| || || Sbjct 120452 CATCATTTCTGGTGCTGTTGTTCCTACATCAAACGCAATTGGTCTGCACTTCTACCCAAT 120393 Query 168102 CTGGGAAGCAGCATCACTCGATGAGTGGTTGTATAACGGTGGTCCTTTCCAACTAGTAGT 168161 |||||||| || ||||| || || ||| | || ||||||||||||| ||||||| | || Sbjct 120392 TTGGGAAGCTGCTTCACTTGACGAATGGCTTTACAACGGTGGTCCTTACCAACTAATCGT 120333 Query 168162 CTTTCACTTCCTCATCGGTATCTA-TGCATACATGGGACGTGAATGGGAACTTTCATATC 168220 | ||||||| || | || || | ||| |||||||| ||||| ||||||||||| | | Sbjct 120332 ATGTCACTTCTTCCTAGGCATTTGCTGC-TACATGGGTCGTGAGTGGGAACTTTCTTTCC 120274 Query 168221 GTTTAGGTATGCGTCCATGGATCTGTGTTGCATACTCTGCACCAGTCGCTGCAGCGAGTG 168280 ||||||| ||||||||||||||| ||| || |||||||||||||| || || || | || Sbjct 120273 GTTTAGGAATGCGTCCATGGATCGCTGTAGCTTACTCTGCACCAGTTGCAGCTGCTACTG 120214 Query 168281 CAGTATTCCTAGTGTATCCTTTCGGTCAAGGTAGTTTCTCTGATGCAATGCCACTCGGAA 168340 | |||||| | | || ||| ||||||||||| ||||| |||| ||||| | || | Sbjct 120213 CTGTATTCATCATCTACCCTATCGGTCAAGGTTCATTCTCAGATGGTATGCCTTTGGGTA 120154 Query 168341 TCTCAGGAACATTCAACTACATGTTGGTCTTCCAAGCTGAGCACAATATTCTCATGCATC 168400 | |||||||| ||||||| |||| | || ||||||||||||||||| || || ||||| | Sbjct 120153 TTTCAGGAACTTTCAACTTCATGATTGTTTTCCAAGCTGAGCACAACATCCTTATGCACC 120094 Query 168401 CCTTCCATATGCTCGGCGTTGCTGGGGTATTTGGTGG--CAGTTTGTTTAGTGCTATGCA 168458 | ||||| ||||| || |||||||| || || ||||| || ||| | | |||||||| Sbjct 120093 CATTCCACATGCTTGGTGTTGCTGGTGTGTTCGGTGGTTCACTTTTCTCA--GCTATGCA 120036 Query 168459 CGGAAGTTTGGTTACTTCTTCTCTCGTTAGAGAGACGACTGAAACCGAATCCCAAAACTA 168518 ||| | | || |||||||| || | | || || ||||| | |||||| |||| Sbjct 120035 CGGTTCTCTAGTAACTTCTTCACTTATCCGTGAAACTACTGAGAACGAATCAGCAAACGC 119976 Query 168519 CGGTTACAAGTTCGGACAAGAAGAAGAAACATACAACATCGTAGCCGCTCATGGTTACTT 168578 |||||||| ||||| |||||||||||||| |||||||| || || || || |||||||| Sbjct 119975 TGGTTACAAATTCGGTCAAGAAGAAGAAACTTACAACATTGTTGCTGCACACGGTTACTT 119916 Query 168579 CGGTCGTTTGATCTTCCAATACGCTTCATTCAACAACTCCCGCTCCTTGCACTTCTTCCT 168638 |||||| | ||||||||||||||||||||||||||||| || || | ||||||||||| Sbjct 119915 TGGTCGTCTAATCTTCCAATACGCTTCATTCAACAACTCTCGTTCACTTCACTTCTTCCT 119856 Query 168639 TGCTGCATGGCCTGTTGTCGGCATCTGGTTCACCGCCCTTGGCGTCTCCACGATGGCATT 168698 |||||| |||||||| || || |||||||| || || ||||| |||| || |||||||| Sbjct 119855 TGCTGCTTGGCCTGTAGTTGGTATCTGGTTTACTGCTCTTGGTATCTCTACTATGGCATT 119796 Query 168699 CAACCTGAACGGTTTCAACTTCAACCAGTCCATCCTTGATGGTCAGGGTCGTGTGTTGAA 168758 |||||| ||||| ||||||||||||||||| | | || ||| ||||| || | || Sbjct 119795 CAACCTTAACGGATTCAACTTCAACCAGTCAGTTGTAGACTCTCAAGGTCGCGTTATCAA 119736 Query 168759 CACCTGGGCAGATGTTCTGAACCGCGCTGGTCTGGGTATGGAAGTTATGCATGAGCGTAA 168818 ||| |||| || | | ||||| || || ||||||||||| ||||| || | || Sbjct 119735 CACTTGGGGTGACATCATCAACCGTGCCAACCTTGGTATGGAAGTAATGCACGAAAGAAA 119676 Query 168819 CGCACACAACTTCCCACTCGATCTTGCT 168846 |||||||||||||||||| || |||||| Sbjct 119675 CGCACACAACTTCCCACTAGACCTTGCT 119648 >seq17 Length=88650 Score = 536 bits (594), Expect = 1e-147 Identities = 736/1024 (72%), Gaps = 16/1024 (2%) Strand=Plus/Minus Query 169304 TGGTTCGATGTTCTCGATGACTGGCTCAAACGCGACCGCTTTGTATTCATTGGTTGGTCT 169363 ||||| |||| | ||||||||| | || || || ||||| ||| |||| |||||| Sbjct 87630 TGGTTTGATGAAGTAGATGACTGGTTGCGCCGTGAACGATTTGTGTTCGTTGGCTGGTCT 87571 Query 169364 GGTCTACTTCTTCTTCCC-ACTGCCTATCTTGCTATTGGAGGGTGGCTCACTGGTACAGC 169422 ||||| | || |||||| || || || ||||| | || || ||| | || || || | Sbjct 87570 GGTCTGTTACT-CTTCCCTACAGCTTACCTTGCATTAGGTGGCTGGTTGACAGGAACCAC 87512 Query 169423 GTTTGTTACTTCCTGGTACACCCACGGACTCGC---TTCCAGTTACTTAGAAGGCGCTAA 169479 || ||||| || |||||||| || ||||| || ||| |||||||||||| || Sbjct 87511 ATTCGTTACATCTTGGTACACACATGGACTTGCAAGTTC---TTACTTAGAAGGATGCAA 87455 Query 169480 CTTCCTCACTGCTGCTGTCAGTACACCTGCTGACGCTATGGGACACTCACTGCTCTTGCT 169539 |||| | || || || || || || || || ||||| |||||| || | || || Sbjct 87454 CTTCTTAACAGCAGCCGTTTCAACTCCAGCAAACAGCATGGGTCACTCATTGTTGTTCCT 87395 Query 169540 ATGGGGTCCAGAAGCACAAGGCGATTTCGTTCGCTGGTGTCAATTGGGTGGTCTCTGGAA 169599 |||||| || || |||||||| || || |||||||||||| ||||||||||| ||| Sbjct 87394 ATGGGGGCCTGAGGCACAAGGTGACTTTACTCGCTGGTGTCAGTTGGGTGGTCTGTGGGC 87335 Query 169600 CTTTGTAGCACTTCATGGTGCATTTGCATTGATTGGTTTCATGCTTAGGCAGTTTGAATT 169659 || ||||| | |||||||| ||||| | ||||| || ||||| | ||||||||| | Sbjct 87334 TTTCGTAGCTTTACATGGTGCCTTTGCGCTTATTGGGTTTATGCTACGACAGTTTGAACT 87275 Query 169660 GGCACGTCTTATTGGCA----TCCGTCCTTATAATGCTATTGCATTCTCTGGTCCTATTG 169715 ||| | || || | | |||||||| || |||||||| ||||| | ||||||| Sbjct 87274 TGCAAG----ATCGGTAAAGCTTCGTCCTTACAACGCTATTGCCTTCTCAGCACCTATTG 87219 Query 169716 CTGTATTTGTCAGTGTCTTTCTTATCTACCCACTTGGACAGTCCTCATGGTTCTTTGCTC 169775 |||| || || ||||| |||||||| || | ||||| || ||||||||||| | Sbjct 87218 CTGTCTTCGTATCAGTCTTCCTTATCTATCCTTTGGGACAATCAGGCTGGTTCTTTGCGC 87159 Query 169776 CCTCCTTTGGAGTATCAGCAATCTTCAGGTTCCTGTTGTTCCTGCAAGGATTCCACAACT 169835 | |||||| ||| | ||||||||| | || | | ||| | ||||| |||||||||| Sbjct 87158 CTAGCTTTGGTGTAGCGGCAATCTTCCGATTTATTCTTTTCTTCCAAGGTTTCCACAACT 87099 Query 169836 GGACGTTGAATCCATTCCACATGATGGGTGTAGCAGGAATCTTGGGCGGAGCATTGCTTT 169895 ||||| | || || ||||||||||||||||| ||||| | | || | ||| | || | Sbjct 87098 GGACGCTTAACCCTTTCCACATGATGGGTGTGGCAGGTGTTCTAGGTGCTGCACTTCTAT 87039 Query 169896 CTGCTATCCATGGTGTTACAGTAGAGAACACATTGTATGAAGACGGTGAGCAGGCAAATA 169955 ||| || || || | |||||||||||||| | | |||||| ||||| || || | Sbjct 87038 GTGCAATTCACGGAGCAACAGTAGAGAACACTCTTTTTGAAGATGGTGACGGTGCGAACA 86979 Query 169956 CTTTCAAGGCGTTTGATTCGACACAGGAAGAAGAGACTTATTCTATGGTCACTGCAAACC 170015 ||||| || || | | || || | |||||||| || |||||||| || || |||| Sbjct 86978 CTTTCCGTGCATTCAACCCAACGCAAGCCGAAGAGACATACTCTATGGTAACAGCTAACC 86919 Query 170016 GCTTCTGGTCGCAGATCTTCGGTATTGCGTTTTCTAACAAGCGTTGGCTTCATTTTTTCA 170075 | || ||||| || ||||| ||| | || || || ||||| |||||||||||||| || | Sbjct 86918 GTTTTTGGTCACAAATCTTTGGTGTAGCTTTCTCAAACAAACGTTGGCTTCATTTCTTTA 86859 Query 170076 TGTTGTTTGTGCCTGTTATGGGTCTTTGGACATCCTCTATTGGCATTATTGGCCTTGCTC 170135 || | ||||| ||||| | |||||||||| | ||||| |||| || ||||||| Sbjct 86858 TGCTTTTTGTCCCTGTAACTGGTCTTTGGATGAGTGCAATTGGTGTTATCGGACTTGCTC 86799 Query 170136 TCAATCTTCGTGCTTACGATTTCGTGAGTCAGGAGATCAGAGCAGCAGAAGATCCAGAAT 170195 | || | || || || || || || || |||||| | ||||| || || || |||| Sbjct 86798 TTAACTTACGAGCATATGACTTTGTTTCACAAGAGATCCGTGCAGCTGAGGACCCTGAAT 86739 Query 170196 TTGAGACCTTCTACACCAAAAACATCCTATTGAATGAAGGACTTCGTGCATGGTTGGCAC 170255 | ||||| |||||||| |||||||| || | || ||||| || | |||||| |||| Sbjct 86738 TCGAGACTTTCTACACAAAAAACATTCTTCTAAACGAAGGTATTAGAGCATGGATGGCGG 86679 Query 170256 CTGCTGATCAACCACATGAAAACTTCATCTTCCCAGAAGAAGTTCTTCCGAGAGGTAACG 170315 || || || ||||||||||| | | |||||||| || ||| | || | || |||| Sbjct 86678 CTCAGGACCAGCCACATGAAAAACTTGTATTCCCAGAGGAGGTTTTACCACGTGGAAACG 86619 Query 170316 CACT 170319 | || Sbjct 86618 CTCT 86615 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 574472838822480