Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Coccomyxa_20sp._20LA000219_20[genbank_20GCA_5F000812005.1_202015-01- 02] 106 sequences; 48,546,496 total letters Query= NC_015284.1 Length=183806 Score E Sequences producing significant alignments: (Bits) Value seq18 706 0.0 seq17 480 1e-130 >seq18 Length=145863 Score = 706 bits (782), Expect = 0.0 Identities = 754/993 (76%), Gaps = 2/993 (0%) Strand=Plus/Minus Query 171820 TTCTGCGAATGGGTAACCTCAACTAACAACAGAATTTATGTTGGTTGGTTCGGTGTACTC 171879 ||||| |||||||| || ||| | ||| | |||| |||||||||| ||||| || Sbjct 120631 TTCTGTGAATGGGTTACTAGCACTGAAAACCGCCTTTACATTGGTTGGTTTGGTGTTCTA 120572 Query 171880 ATGATCCCATGTTTGCTCACAGCAGCAGCATGCTTCATCGTTGCATTCATTGCAGCACCT 171939 |||||||| | | | || ||| | | ||||| | ||||| |||| |||||| Sbjct 120571 ATGATCCCTACTCTTTTAACTGCAACTTCTGTGTTCATTATCGCATTTGTTGCTGCACCT 120512 Query 171940 CCTGTCGATATCGACGGAATCAGAGAACCAGTTGCGGGTTCTTTCTTATATGGTAACAAC 171999 ||||| || ||||| || ||| | || || || | |||||| | | || ||||||||| Sbjct 120511 CCTGTAGACATCGATGGTATCCGTGAGCCTGTATCAGGTTCTCTACTTTACGGTAACAAC 120452 Query 172000 ATCATCTCTGGTGCAGTTGTTCCATCATCAAACGCAATAGGTCTCCACTTCTACCCTATC 172059 ||||| |||||||| |||||||| ||||||||||||| ||||| ||||||||||| || Sbjct 120451 ATCATTTCTGGTGCTGTTGTTCCTACATCAAACGCAATTGGTCTGCACTTCTACCCAATT 120392 Query 172060 TGGGAAGCAGCAACCGTAGATGAATGGTTGTACAATGGTGGTCCTTATCAGTTGGTAATC 172119 |||||||| || | | || |||||| | ||||| ||||||||||| || | | | Sbjct 120391 TGGGAAGCTGCTTCACTTGACGAATGGCTTTACAACGGTGGTCCTTACCAACTAATCGTA 120332 Query 172120 TTCCACTTCCTTATCGGTATCT-CAGCATACATGGGAAGACAGTGGGAACTATCATACAG 172178 | |||||| | | || || | | || |||||||| | |||||||||| || | | | Sbjct 120331 TGTCACTTCTTCCTAGGCATTTGCTGC-TACATGGGTCGTGAGTGGGAACTTTCTTTCCG 120273 Query 172179 ATTAGGTATGAGACCATGGATATGTGTAGCATATTCAGCACCTGTATCAGCAGCATTTGC 172238 ||||| ||| | |||||||| |||||| || || ||||| || |||| || ||| Sbjct 120272 TTTAGGAATGCGTCCATGGATCGCTGTAGCTTACTCTGCACCAGTTGCAGCTGCTACTGC 120213 Query 172239 TGTGTTCCTTGTGTATCCATTCGGTCAGGGTTCATTCTCTGATGGTATGCCACTAGGTAT 172298 ||| ||| | | || || ||||||| ||||||||||| ||||||||||| | ||||| Sbjct 120212 TGTATTCATCATCTACCCTATCGGTCAAGGTTCATTCTCAGATGGTATGCCTTTGGGTAT 120153 Query 172299 CTCAGGTACGTTCAACTTTATGTTCGTGTTCCAAGCAGAGCATAACATTCTAATGCATCC 172358 ||||| || |||||||| ||| | || |||||||| ||||| ||||| || ||||| || Sbjct 120152 TTCAGGAACTTTCAACTTCATGATTGTTTTCCAAGCTGAGCACAACATCCTTATGCACCC 120093 Query 172359 TTTCCACATGGCAGGAGTAGCAGGAATGTTTGGAGGATCTTTATTCTCAGCAATGCACGG 172418 ||||||||| || || || || |||| || || || | |||||||| |||||||| Sbjct 120092 ATTCCACATGCTTGGTGTTGCTGGTGTGTTCGGTGGTTCACTTTTCTCAGCTATGCACGG 120033 Query 172419 TTCTTTAGTTACATCTTCTCTAATCAGAGAGACAACTGAAGCAGAATCACAGAACTACGG 172478 |||| |||| || ||||| || ||| | || || ||||| |||||| ||| || Sbjct 120032 TTCTCTAGTAACTTCTTCACTTATCCGTGAAACTACTGAGAACGAATCAGCAAACGCTGG 119973 Query 172479 ATACAAGTTCGGACAAGAAGAAGAAACATACAACATAGTAGCAGCACACGGTTACTTTGG 172538 ||||| ||||| |||||||||||||| |||||||| || || ||||||||||||||||| Sbjct 119972 TTACAAATTCGGTCAAGAAGAAGAAACTTACAACATTGTTGCTGCACACGGTTACTTTGG 119913 Query 172539 TCGTCTTATCTTCCAGTATGCTTCTTTCAACAACTCAAGAAGTCTTCACTTCTTCCTAGC 172598 |||||| |||||||| || ||||| ||||||||||| | |||||||||||||| || Sbjct 119912 TCGTCTAATCTTCCAATACGCTTCATTCAACAACTCTCGTTCACTTCACTTCTTCCTTGC 119853 Query 172599 AGTTTTCCCTGTTGTATGTGTATGGTTAACCTCTATGGGTATCTGTACAATGGCATTCAA 172658 | || ||||| || || | ||||| || || | ||||||| ||| ||||||||||| Sbjct 119852 TGCTTGGCCTGTAGTTGGTATCTGGTTTACTGCTCTTGGTATCTCTACTATGGCATTCAA 119793 Query 172659 CCTTAACGGTTTCAACTTCAACCAATCAGTTGTAGATGCTAACGGTAAGATTGTTCCTAC 172718 ||||||||| |||||||||||||| ||||||||||| || | ||| || | || Sbjct 119792 CCTTAACGGATTCAACTTCAACCAGTCAGTTGTAGACTCTCAAGGTCGCGTTATCAACAC 119733 Query 172719 ATGGGGTGACGTTCTTAACAGAGCAAACCTAGGTATGGAAGTTATGCATGAAAGAAATGC 172778 ||||||||| | | ||| | || ||||| ||||||||||| ||||| |||||||| || Sbjct 119732 TTGGGGTGACATCATCAACCGTGCCAACCTTGGTATGGAAGTAATGCACGAAAGAAACGC 119673 Query 172779 ACACAACTTCCCATTAGACCTTGCTTCTGCAGA 172811 ||||||||||||| ||||||||||||| | ||| Sbjct 119672 ACACAACTTCCCACTAGACCTTGCTTCAGTAGA 119640 >seq17 Length=88650 Score = 480 bits (532), Expect = 1e-130 Identities = 735/1044 (70%), Gaps = 25/1044 (2%) Strand=Plus/Minus Query 172947 TTGGTTTGATGTTCTTGACGACTGGTTAAAGAGAGATCGTTTCGTATTCATCGGATGGTC 173006 ||||||||||| | || |||||||| | || || || || ||| | || ||||| Sbjct 87631 TTGGTTTGATGAAGTAGATGACTGGTTGCGCCGTGAACGATTTGTGTTCGTTGGCTGGTC 87572 Query 173007 TGGTCTTTTACTTCTACCTTGTGCTTACCTTTCTATCGGTGGTTGGTTCTTAGGAACTAC 173066 |||||| ||||| | ||| ||||||||| | | ||||| ||||| |||||| || Sbjct 87571 TGGTCTGTTACTCTTCCCTACAGCTTACCTTGCATTAGGTGGCTGGTTGACAGGAACCAC 87512 Query 173067 CTTCGTTACATCATGGTATACACATGGTATTGCATCTTCATATCTTGAAGGAGCAAACTT 173126 ||||||||||| ||||| |||||||| ||||| ||| || | |||||| ||||| Sbjct 87511 ATTCGTTACATCTTGGTACACACATGGACTTGCAAGTTCTTACTTAGAAGGATGCAACTT 87452 Query 173127 TTTAACAGCAGCAGTCTCCACACCTGGCGACGCAATGGGTCATAGTCTTCTGTTCCTTTG 173186 ||||||||||| || || || || | || |||||||| | ||||||| || Sbjct 87451 CTTAACAGCAGCCGTTTCAACTCCAGCAAACAGCATGGGTCACTCATTGTTGTTCCTATG 87392 Query 173187 GGGACCTGAAGCACAAGGTTCATTCGTACGTTGGTTACAACTCGGAGGACTATGGAACTT 173246 ||| ||||| ||||||||| || || |||| || | || || || ||| || Sbjct 87391 GGGGCCTGAGGCACAAGGTGACTTTACTCGCTGGTGTCAGTTGGGTGGTCTGTGGGCTTT 87332 Query 173247 TGTAGCATTACATGGAGTCTTTGGACTCATAGGTTTCATGCTCCGTCAGTTTGAGATCGC 173306 ||||| |||||||| | ||||| || || || || ||||| || |||||||| | || Sbjct 87331 CGTAGCTTTACATGGTGCCTTTGCGCTTATTGGGTTTATGCTACGACAGTTTGAACTTGC 87272 Query 173307 AGGACTTGTAG-GCATCAGACCTTACAACGCACTCGCATTCTCTGCTGTTATCGCAGTCT 173365 | || ||| || || | ||||||||||| | || ||||| || ||| || |||| Sbjct 87271 AAGATCGGTAAAGCTTC-GTCCTTACAACGCTATTGCCTTCTCAGCACCTATTGCTGTCT 87213 Query 173366 TCACTAGCA-TCTTTTTAATCTACCCACTAGGGCAGCACAGTTGGTTCTTCGCACCTTCA 173424 || || || |||| | ||||| || | || || | |||||||| || ||| Sbjct 87212 TC-GTATCAGTCTTCCTTATCTATCCTTTGGGACAATCAGGCTGGTTCTTTGCGCCTAGC 87154 Query 173425 TTCGGTGTCGCAGCAATCTTTCGTTATATCTTATTCATACAAGGTTTCCACAACATTACA 173484 || ||||| || |||||||| || | ||| | ||| | ||||||||||||||| || Sbjct 87153 TTTGGTGTAGCGGCAATCTTCCGATTTATTCTTTTCTTCCAAGGTTTCCACAACTGGACG 87094 Query 173485 TTGAATCCATTTCACATGATGGGTGTTGCAGGAATACTAGGTGGAGCATTACTATGTGCC 173544 | || || || |||||||||||||| ||||| | ||||||| ||| | |||||||| Sbjct 87093 CTTAACCCTTTCCACATGATGGGTGTGGCAGGTGTTCTAGGTGCTGCACTTCTATGTGCA 87034 Query 173545 ATTCATGGTGCAACAGTGCAGAACACATTGTATGAAGACACATCACAATATACTGAAGGT 173604 ||||| || |||||||| ||||||| | | ||||| || ||| ||| Sbjct 87033 ATTCACGGAGCAACAGTAGAGAACACTCTTTTTGAAG------------ATGGTGACGGT 86986 Query 173605 AAGATTCAATCCACAACTTTCAGAGCATTTGATCCTACACAGGAAGAAGAAACTTATAGT 173664 || || |||||| | ||||| | || || || | ||||| || || | Sbjct 86985 GCGA--------AC-ACTTTCCGTGCATTCAACCCAACGCAAGCCGAAGAGACATACTCT 86935 Query 173665 ATGATTACAGCGAACAGATTCTGGTCACAGATATTTGGTATCGCATTTTCAAACAAAAGA 173724 ||| | ||||| ||| | || |||||||| || |||||| | || || ||||||||| | Sbjct 86934 ATGGTAACAGCTAACCGTTTTTGGTCACAAATCTTTGGTGTAGCTTTCTCAAACAAACGT 86875 Query 173725 TTTTTACACTTCCTCATGTTGTTCGTACCTGTCATGGGTATGTGGACATCATCCATAGGT 173784 | | || ||| | ||| | || || ||||| | ||| | |||| | || ||| Sbjct 86874 TGGCTTCATTTCTTTATGCTTTTTGTCCCTGTAACTGGTCTTTGGATGAGTGCAATTGGT 86815 Query 173785 ATCGTAGGTCTTGCACTTAACCTTAGAGCATACGACTTTGTATCTCAAGAGATAAGAGCA 173844 | | || ||||| |||||| | ||||||| |||||||| || |||||||| | ||| Sbjct 86814 GTTATCGGACTTGCTCTTAACTTACGAGCATATGACTTTGTTTCACAAGAGATCCGTGCA 86755 Query 173845 GCAGAAGATCCAGAGTTCGAGACTTTCTACACTAAGAATATACTTCTTAATGAAGGTATG 173904 || || || || || ||||||||||||||||| || || || ||||| || |||||||| Sbjct 86754 GCTGAGGACCCTGAATTCGAGACTTTCTACACAAAAAACATTCTTCTAAACGAAGGTATT 86695 Query 173905 AGAGCATGGATGTCATCTGTAGATCAACCACATGAGAACTTCGTATTTCCAGAAGAAGTG 173964 |||||||||||| | || || || |||||||| || | ||||| ||||| || || Sbjct 86694 AGAGCATGGATGGCGGCTCAGGACCAGCCACATGAAAAACTTGTATTCCCAGAGGAGGTT 86635 Query 173965 TTACCAAGAGGTAACGCACTTTAA 173988 |||||| | || ||||| |||||| Sbjct 86634 TTACCACGTGGAAACGCTCTTTAA 86611 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 588050420832160