Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Coccomyxa_20sp._20LA000219_20[genbank_20GCA_5F000812005.1_202015-01- 02] 106 sequences; 48,546,496 total letters Query= NC_015285.1 Length=174285 Score E Sequences producing significant alignments: (Bits) Value seq18 812 0.0 seq17 491 5e-134 >seq18 Length=145863 Score = 812 bits (900), Expect = 0.0 Identities = 772/984 (78%), Gaps = 2/984 (0%) Strand=Plus/Minus Query 162385 TTCTGCGAGTGGGTAACTTCTACCAATAACCGCCTCTATGTCGGTTGGTTCGGCGTACTG 162444 ||||| || ||||| ||| || | |||||||| || | |||||||| || || || Sbjct 120631 TTCTGTGAATGGGTTACTAGCACTGAAAACCGCCTTTACATTGGTTGGTTTGGTGTTCTA 120572 Query 162445 ATGATTCCAACTCTGTTGGCAGCAACCATCTGT-TTCATCGTCGCCTTCGTCGCTGCTCC 162503 ||||| || ||||| || | ||||| ||||| ||||| |||| || || ||||| || Sbjct 120571 ATGATCCCTACTCTTTTAACTGCAACT-TCTGTGTTCATTATCGCATTTGTTGCTGCACC 120513 Query 162504 CCCTGTGGACATCGACGGCATCCGTGAACCCGTCGCTGGTTCACTCATGTATGGTAACAA 162563 ||||| |||||||| || |||||||| || || | ||||| || | || |||||||| Sbjct 120512 TCCTGTAGACATCGATGGTATCCGTGAGCCTGTATCAGGTTCTCTACTTTACGGTAACAA 120453 Query 162564 CATCATCTCTGGTGCAGTTGTTCCATCTTCCAACGCAATTGGTCTTCACTTCTATCCCAT 162623 |||||| |||||||| |||||||| | || |||||||||||||| |||||||| || || Sbjct 120452 CATCATTTCTGGTGCTGTTGTTCCTACATCAAACGCAATTGGTCTGCACTTCTACCCAAT 120393 Query 162624 CTGGGAAGCCGCATCACTTGATGAGTGGCTGTATAACGGTGGTCCTTTCCAACTCGTAGT 162683 |||||||| || |||||||| || ||||| || ||||||||||||| |||||| | || Sbjct 120392 TTGGGAAGCTGCTTCACTTGACGAATGGCTTTACAACGGTGGTCCTTACCAACTAATCGT 120333 Query 162684 ATTCCACTTCCTGATCGGCATCTATGCCTACATGGGACGTGAATGGGAACTCTCTTACCG 162743 || |||||| | | ||||| | ||||||||| ||||| |||||||| |||| ||| Sbjct 120332 ATGTCACTTCTTCCTAGGCATTTGCTGCTACATGGGTCGTGAGTGGGAACTTTCTTTCCG 120273 Query 162744 TCTTGGTATGCGTCCATGGATCTGCGTAGCATACTCTGCACCTGTTGCAGCAGCATCGGC 162803 | | || ||||||||||||||| ||||| ||||||||||| |||||||| || | || Sbjct 120272 TTTAGGAATGCGTCCATGGATCGCTGTAGCTTACTCTGCACCAGTTGCAGCTGCTACTGC 120213 Query 162804 AGTCTTCCTGGTCTATCCTTTCGGTCAAGGTTCTTTCTCTGACGCAATGCCCTTGGGTAT 162863 || ||| | |||| ||| ||||||||||||| ||||| || | ||||| |||||||| Sbjct 120212 TGTATTCATCATCTACCCTATCGGTCAAGGTTCATTCTCAGATGGTATGCCTTTGGGTAT 120153 Query 162864 CAGTGGTACATTCAACTACATGCTTGTCTTCCAAGCAGAGCACAACATTCTGATGCATCC 162923 || || ||||||| |||| |||| |||||||| ||||||||||| || ||||| || Sbjct 120152 TTCAGGAACTTTCAACTTCATGATTGTTTTCCAAGCTGAGCACAACATCCTTATGCACCC 120093 Query 162924 CTTCCACATGTTGGGTGTCGCAGGTGTCTTCGGTGGTTCACTGTTCAGTGCAATGCACGG 162983 ||||||||| | ||||| || ||||| |||||||||||||| ||| || |||||||| Sbjct 120092 ATTCCACATGCTTGGTGTTGCTGGTGTGTTCGGTGGTTCACTTTTCTCAGCTATGCACGG 120033 Query 162984 TTCTTTGGTTACATCTTCACTCGTCCGTGAGACGACTGAAACTGAGTCACAGAACTATGG 163043 |||| | || || |||||||| ||||||| || ||||| | || ||| ||| ||| Sbjct 120032 TTCTCTAGTAACTTCTTCACTTATCCGTGAAACTACTGAGAACGAATCAGCAAACGCTGG 119973 Query 163044 TTACAAGTTCGGTCAAGAAGAAGAGACATACAACATCGTCGCAGCCCATGGTTACTTCGG 163103 |||||| ||||||||||||||||| || |||||||| || || || || |||||||| || Sbjct 119972 TTACAAATTCGGTCAAGAAGAAGAAACTTACAACATTGTTGCTGCACACGGTTACTTTGG 119913 Query 163104 TCGTTTGATCTTCCAATATGCATCATTCAACAACTCCCGTTCCTTGCACTTCTTCCTTGC 163163 |||| | ||||||||||| || |||||||||||||| ||||| | |||||||||||||| Sbjct 119912 TCGTCTAATCTTCCAATACGCTTCATTCAACAACTCTCGTTCACTTCACTTCTTCCTTGC 119853 Query 163164 TGCATGGCCTGTTGTCGGCATCTGGTTCACCGCCCTTGGCGTGTCAACCATGGCATTCAA 163223 ||| |||||||| || || |||||||| || || ||||| | || || ||||||||||| Sbjct 119852 TGCTTGGCCTGTAGTTGGTATCTGGTTTACTGCTCTTGGTATCTCTACTATGGCATTCAA 119793 Query 163224 CCTGAACGGTTTCAACTTCAACCAGTCCATCCTTGATGGTCAGGGTCGTGTGTTGAACAC 163283 ||| ||||| ||||||||||||||||| | | || ||| ||||| || | ||||| Sbjct 119792 CCTTAACGGATTCAACTTCAACCAGTCAGTTGTAGACTCTCAAGGTCGCGTTATCAACAC 119733 Query 163284 CTGGGCAGACGTTCTGAACCGTGCAGGTTTGGGTATGGAAGTTATGCACGAGCGCAATGC 163343 |||| ||| | | |||||||| | ||||||||||| |||||||| | || || Sbjct 119732 TTGGGGTGACATCATCAACCGTGCCAACCTTGGTATGGAAGTAATGCACGAAAGAAACGC 119673 Query 163344 TCACAACTTCCCACTTGACCTGGC 163367 |||||||||||||| ||||| || Sbjct 119672 ACACAACTTCCCACTAGACCTTGC 119649 >seq17 Length=88650 Score = 491 bits (544), Expect = 5e-134 Identities = 731/1028 (71%), Gaps = 14/1028 (1%) Strand=Plus/Minus Query 163618 TGGTTTGATGTCCTGGATGACTGGCTTAAGCGCGATCGTTTCGTATTTATTGGTTGGTCT 163677 |||||||||| | ||||||||| | || || || || || || |||| |||||| Sbjct 87630 TGGTTTGATGAAGTAGATGACTGGTTGCGCCGTGAACGATTTGTGTTCGTTGGCTGGTCT 87571 Query 163678 GGATTACTACTTCTTCCC-ACTGCTTATATGGCAATTGGTGGCTGGCTTACTGGTACAAC 163736 || | |||| |||||| || ||||| | ||| | ||||||||| | || || || || Sbjct 87570 GGTCTGTTACT-CTTCCCTACAGCTTACCTTGCATTAGGTGGCTGGTTGACAGGAACCAC 87512 Query 163737 TTTCGTTACGTCGTGGTACACCCATGGACTGGCAACTTCCTATCTTGAGGG-TGCTAATT 163795 |||||||| || |||||||| |||||||| |||| ||| || | || || ||| | || Sbjct 87511 ATTCGTTACATCTTGGTACACACATGGACTTGCAAGTTCTTACTTAGAAGGATGCAACTT 87452 Query 163796 TTCTCACAGCGGCTGTGTCAACGCCTGCTGACGCTATGGGTCATTCTCTTCTTCTTC-TC 163854 | | ||||| || || ||||| || || || |||||||| || || || ||| | Sbjct 87451 CT-TAACAGCAGCCGTTTCAACTCCAGCAAACAGCATGGGTCACTCA-TTGTTGTTCCTA 87394 Query 163855 TGGGGTCCTGAGGCTCAGGGCGATTTCGTCCGCTGGATCCAACTTGGGGGACTCTGGAAT 163914 ||||| |||||||| || || || || |||||| || | || || || ||| | Sbjct 87393 TGGGGGCCTGAGGCACAAGGTGACTTTACTCGCTGGTGTCAGTTGGGTGGTCTGTGGGCT 87334 Query 163915 TTTGTGGCACTCCACGGAGCCTTTGCTCTCATTGGTTTCATGCTTCGGCAATTTGAACTT 163974 || || || | || || |||||||| || ||||| || ||||| || || ||||||||| Sbjct 87333 TTCGTAGCTTTACATGGTGCCTTTGCGCTTATTGGGTTTATGCTACGACAGTTTGAACTT 87274 Query 163975 GCTCGCCTGATTGGAA----TCAGACCCTACAATGCGATTGCTTTCTCTGGTCCTATTGC 164030 || | || || | | | || ||||| || ||||| ||||| | |||||||| Sbjct 87273 GCAAG----ATCGGTAAAGCTTCGTCCTTACAACGCTATTGCCTTCTCAGCACCTATTGC 87218 Query 164031 TGTCTTCGTTAGTGTCTTTCTCATCTACCCTCTGGGTCAATCAAGTTGGTTCTTCGCTCC 164090 ||||||||| ||||| || ||||| ||| |||| |||||| | |||||||| || || Sbjct 87217 TGTCTTCGTATCAGTCTTCCTTATCTATCCTTTGGGACAATCAGGCTGGTTCTTTGCGCC 87158 Query 164091 ATCTTTTGGAGTGGCAGCAATCTTCAGATTCCTCTTATTCCTTCAAGGATTTCATAACTG 164150 ||||| || || ||||||||| |||| | | ||| | ||||| || || ||||| Sbjct 87157 TAGCTTTGGTGTAGCGGCAATCTTCCGATTTATTCTTTTCTTCCAAGGTTTCCACAACTG 87098 Query 164151 GACTTTGAACCCCTTCCATATGATGGGAGTTGCTGGTATACTAGGCGGAGCATTGCTATC 164210 ||| | ||||| ||||| |||||||| || || ||| | ||||| | ||| | |||| Sbjct 87097 GACGCTTAACCCTTTCCACATGATGGGTGTGGCAGGTGTTCTAGGTGCTGCACTTCTATG 87038 Query 164211 TGCTATTCACGGAGTCACAGTTGAAAATACATTGTATGAAGATGGAGAACAAGCAAACAC 164270 ||| |||||||||| ||||| || || || | | ||||||||| || || ||||| Sbjct 87037 TGCAATTCACGGAGCAACAGTAGAGAACACTCTTTTTGAAGATGGTGACGGTGCGAACAC 86978 Query 164271 CTTTAAGGCGTTTGATTCGACACAGGAAGAAGAGACTTATTCTATGGTCACTGCAAACCG 164330 || || || | | || || | |||||||| || |||||||| || || ||||| Sbjct 86977 TTTCCGTGCATTCAACCCAACGCAAGCCGAAGAGACATACTCTATGGTAACAGCTAACCG 86918 Query 164331 CTTCTGGTCGCAGATCTTCGGTGTTGCGTTTTCTAACAAGCGGTGGCTTCATTTTTTCAT 164390 || ||||| || ||||| ||||| || || || ||||| || ||||||||||| || || Sbjct 86917 TTTTTGGTCACAAATCTTTGGTGTAGCTTTCTCAAACAAACGTTGGCTTCATTTCTTTAT 86858 Query 164391 GTTGTTTGTGCCTGTTATGGGTCTATGGACATCCTCTATTGGCATTATTGGCCTTGCTCT 164450 | | ||||| ||||| | ||||| |||| | ||||| |||| || |||||||| Sbjct 86857 GCTTTTTGTCCCTGTAACTGGTCTTTGGATGAGTGCAATTGGTGTTATCGGACTTGCTCT 86798 Query 164451 CAATCTTCGTGCTTACGATTTTGTAAGTCAAGAGATTAGAGCAGCAGAAGATCCTGAGTT 164510 || | || || || || ||||| |||||||| | ||||| || || ||||| || Sbjct 86797 TAACTTACGAGCATATGACTTTGTTTCACAAGAGATCCGTGCAGCTGAGGACCCTGAATT 86738 Query 164511 CGAGACTTTCTATACCAAGAACATCTTATTGAACGAAGGACTCCGTGCATGGTTAGCACC 164570 |||||||||||| || || ||||| | | |||||||| | | |||||| | || | Sbjct 86737 CGAGACTTTCTACACAAAAAACATTCTTCTAAACGAAGGTATTAGAGCATGGATGGCGGC 86678 Query 164571 AGTTGACCAGCCAGGAGAACGGTTTGTCTTCCCAGAAGAAGTACTGCCGAGAGGTAATGC 164630 ||||||||| ||| |||| |||||||| || || | || | || || || Sbjct 86677 TCAGGACCAGCCACATGAAAAACTTGTATTCCCAGAGGAGGTTTTACCACGTGGAAACGC 86618 Query 164631 GCTTTAAT 164638 ||||||| Sbjct 86617 TCTTTAAT 86610 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 557583261201200