Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Coccomyxa_20sp._20LA000219_20[genbank_20GCA_5F000812005.1_202015-01- 02] 106 sequences; 48,546,496 total letters Query= NC_015286.1 Length=175230 Score E Sequences producing significant alignments: (Bits) Value seq18 728 0.0 seq17 542 3e-149 >seq18 Length=145863 Score = 728 bits (806), Expect = 0.0 Identities = 749/986 (76%), Gaps = 2/986 (0%) Strand=Plus/Minus Query 167087 CTTTTGCGATTGGGTTACCAGCACTAACAACCGTCTGTATGTCGGTTGGTTCGGCGTTCT 167146 ||| || || |||||||| |||||| | ||||| || || | |||||||| || ||||| Sbjct 120632 CTTCTGTGAATGGGTTACTAGCACTGAAAACCGCCTTTACATTGGTTGGTTTGGTGTTCT 120573 Query 167147 GATGATCCCTACGTTGCTTGCAGCAACCATCTGT-TTCATCATCGCCTTCGTCGGTGCTC 167205 ||||||||||| | | | ||||| ||||| ||||| ||||| || || | ||| | Sbjct 120572 AATGATCCCTACTCTTTTAACTGCAACT-TCTGTGTTCATTATCGCATTTGTTGCTGCAC 120514 Query 167206 CTCCTGTGGACATCGATGGTATCCGCGAACCAGTTGCTGGTTCACTCATGTATGGTAACA 167265 ||||||| ||||||||||||||||| || || || | ||||| || | || ||||||| Sbjct 120513 CTCCTGTAGACATCGATGGTATCCGTGAGCCTGTATCAGGTTCTCTACTTTACGGTAACA 120454 Query 167266 ACATCATCTCTGGTGCAGTTGTTCCTTCTTCTAATGCTATTGGTCTTCACTTCTATCCCA 167325 ||||||| |||||||| ||||||||| | || || || |||||||| |||||||| || | Sbjct 120453 ACATCATTTCTGGTGCTGTTGTTCCTACATCAAACGCAATTGGTCTGCACTTCTACCCAA 120394 Query 167326 TCTGGGAAGCAGCAACCCTCGACGAGTGGTTGTACAATGGTGGTCCTTTCCAACTCGTAG 167385 | |||||||| || | || ||||| ||| | ||||| |||||||||| |||||| | | Sbjct 120393 TTTGGGAAGCTGCTTCACTTGACGAATGGCTTTACAACGGTGGTCCTTACCAACTAATCG 120334 Query 167386 TTTTCCACTTCCTGATTGGCATCTATGCCTATATGGGTCGTGAGTGGGAACTCTCTTACC 167445 | | |||||| | | ||||| | ||| |||||||||||||||||||| |||| || Sbjct 120333 TATGTCACTTCTTCCTAGGCATTTGCTGCTACATGGGTCGTGAGTGGGAACTTTCTTTCC 120274 Query 167446 GTCTCGGTATGCGTCCCTGGATCTGTGTTGCATACTCTGCTCCAGTCGCTGCAGCATCTG 167505 || | || |||||||| |||||| ||| || |||||||| ||||| || || || ||| Sbjct 120273 GTTTAGGAATGCGTCCATGGATCGCTGTAGCTTACTCTGCACCAGTTGCAGCTGCTACTG 120214 Query 167506 CTGTATTCCTCGTCTATCCTTTCGGTCAAGGTTCTTTCTCTGACGCGATGCCTCTTGGTA 167565 |||||||| || |||| ||| ||||||||||||| ||||| || | |||||| | |||| Sbjct 120213 CTGTATTCATCATCTACCCTATCGGTCAAGGTTCATTCTCAGATGGTATGCCTTTGGGTA 120154 Query 167566 TCTCTGGTACATTCAACTACATGCTTGTCTTCCAAGCAGAGCACAACATCCTGATGCACC 167625 | || || || ||||||| |||| |||| |||||||| |||||||||||||| ||||||| Sbjct 120153 TTTCAGGAACTTTCAACTTCATGATTGTTTTCCAAGCTGAGCACAACATCCTTATGCACC 120094 Query 167626 CCTTCCATATGCTCGGCGTTGCTGGCGTATTCGGCGGTTCTCTGTTCAGTGCAATGCACG 167685 | ||||| ||||| || |||||||| || ||||| ||||| || ||| || ||||||| Sbjct 120093 CATTCCACATGCTTGGTGTTGCTGGTGTGTTCGGTGGTTCACTTTTCTCAGCTATGCACG 120034 Query 167686 GTTCTCTGGTTACCTCTTCGCTGGTTCGTGAAACCACCGAAACTGAGTCCCAGAACTATG 167745 ||||||| || || ||||| || | |||||||| || || | || || ||| || Sbjct 120033 GTTCTCTAGTAACTTCTTCACTTATCCGTGAAACTACTGAGAACGAATCAGCAAACGCTG 119974 Query 167746 GTTACAAGTTCGGTCAGGAAGAAGAGACGTATAACATCGTCGCTGCTCATGGTTACTTCG 167805 ||||||| |||||||| |||||||| || || ||||| || ||||| || |||||||| | Sbjct 119973 GTTACAAATTCGGTCAAGAAGAAGAAACTTACAACATTGTTGCTGCACACGGTTACTTTG 119914 Query 167806 GTCGCCTGATCTTCCAATACGCATCCTTCAACAACTCCCGCTCGCTGCACTTCTTCTTGG 167865 |||| || |||||||||||||| || ||||||||||| || || || ||||||||| | | Sbjct 119913 GTCGTCTAATCTTCCAATACGCTTCATTCAACAACTCTCGTTCACTTCACTTCTTCCTTG 119854 Query 167866 CAGCATGGCCTGTTGTTGGTATCTGGTNNNNNNNNNNNNNNNNNNNNNNNNNNNNATTCA 167925 | || |||||||| ||||||||||||| ||||| Sbjct 119853 CTGCTTGGCCTGTAGTTGGTATCTGGTTTACTGCTCTTGGTATCTCTACTATGGCATTCA 119794 Query 167926 ACCTGAACGGTTTCAACTTCAACCAGTCTATCCTTGATAGTTCTGGTAAGGTTCTGCCTA 167985 |||| ||||| ||||||||||||||||| | | || | ||| ||| | | Sbjct 119793 ACCTTAACGGATTCAACTTCAACCAGTCAGTTGTAGACTCTCAAGGTCGCGTTATCAACA 119734 Query 167986 CTTGGGCAGACGTGCTCAACCGTGCTGGTCTGGGTATGGAAGTTATGCACGAGCGTAATG 168045 |||||| ||| | |||||||||| || ||||||||||| |||||||| | || | Sbjct 119733 CTTGGGGTGACATCATCAACCGTGCCAACCTTGGTATGGAAGTAATGCACGAAAGAAACG 119674 Query 168046 CTCACAACTTCCCTCTCGACCTTGCT 168071 | ||||||||||| || ||||||||| Sbjct 119673 CACACAACTTCCCACTAGACCTTGCT 119648 >seq17 Length=88650 Score = 542 bits (600), Expect = 3e-149 Identities = 737/1022 (72%), Gaps = 12/1022 (1%) Strand=Plus/Minus Query 168480 TGGTTCGATGTCCTCGATGACTGGCTTAAACGGGATCGTTTCGTTTTTGTTGGTTGGTCT 168539 ||||| |||| | ||||||||| | || || || || || || ||||| |||||| Sbjct 87630 TGGTTTGATGAAGTAGATGACTGGTTGCGCCGTGAACGATTTGTGTTCGTTGGCTGGTCT 87571 Query 168540 GGACTTCTTCTTTTTCCCACTGCTTATCTTGCTATTGGCGGTTGGCTTACTGGGACTGCT 168599 || || | || || || || ||||| ||||| | || || ||| | || || || | Sbjct 87570 GGTCTGTTACTCTTCCCTACAGCTTACCTTGCATTAGGTGGCTGGTTGACAGGAACCACA 87511 Query 168600 TTCGTCACGAGTTGGTATACTCACGGGTTGGCAAGTTCCTATCTGGAGGGCGCAAACTTT 168659 ||||| || |||||| || || || | |||||||| || | || || ||||| Sbjct 87510 TTCGTTACATCTTGGTACACACATGGACTTGCAAGTTCTTACTTAGAAGGATGCAACTTC 87451 Query 168660 CTTACTGCGGCAGTTAGTACTCCAGCAGATTCTATGGGTCATTCTCTTCTGCTTCTCTGG 168719 | || || || ||| ||||||||| | |||||||| || | || | || ||| Sbjct 87450 TTAACAGCAGCCGTTTCAACTCCAGCAAACAGCATGGGTCACTCATTGTTGTTCCTATGG 87391 Query 168720 GGTCCTGAGGCACAAGGGGA-TTTCGTCAGATGGTGTCAACTTGGAGGACTCTGGGCTTT 168778 || |||||||||||||| || ||| || | |||||||| | || || || |||||||| Sbjct 87390 GGGCCTGAGGCACAAGGTGACTTTACTC-GCTGGTGTCAGTTGGGTGGTCTGTGGGCTTT 87332 Query 168779 TGTGGCGCTCCACGGGGCTTTCGCTCTAATCGGTTTCATGCTTCGTCAGTTTGAACTGGC 168838 || || | || || || || || || || || || ||||| || ||||||||||| || Sbjct 87331 CGTAGCTTTACATGGTGCCTTTGCGCTTATTGGGTTTATGCTACGACAGTTTGAACTTGC 87272 Query 168839 ACGTCTCATCGGTA----TCCGTCCCTACAATGCTATTGCGTTCTCTGGTCCTATCGCTG 168894 | | ||||||| | ||||| ||||| |||||||| ||||| | ||||| |||| Sbjct 87271 AAG----ATCGGTAAAGCTTCGTCCTTACAACGCTATTGCCTTCTCAGCACCTATTGCTG 87216 Query 168895 TTTTTGTTAGCGTCTTTCTCATCTACCCTCTGGGTCAATCGAGTTGGTTTTTCGCTCC-A 168953 | || || ||||| || ||||| ||| |||| ||||| | ||||| || || || | Sbjct 87215 TCTTCGTATCAGTCTTCCTTATCTATCCTTTGGGACAATCAGGCTGGTTCTTTGCGCCTA 87156 Query 168954 TCTTTCGGGGTCTCAGCAATCTTCCGATTCCTTCTCTTCCTACAAGGATTCCATAACTGG 169013 |||| || || | |||||||||||||| |||| ||| | ||||| ||||| |||||| Sbjct 87155 GCTTT-GGTGTAGCGGCAATCTTCCGATTTATTCTTTTCTTCCAAGGTTTCCACAACTGG 87097 Query 169014 ACACTGAATCCATTTCATATGATGGGTGTAGCAGGTATTTTGGGAGGAGCCTTGCTTTCT 169073 || || || || || || ||||||||||| |||||| || | || | || | || | | Sbjct 87096 ACGCTTAACCCTTTCCACATGATGGGTGTGGCAGGTGTTCTAGGTGCTGCACTTCTATGT 87037 Query 169074 GCCATTCATGGTGTTACAGTAGAGAATACTCTGTATCAAGATGGTGAACAAGCAAATACT 169133 || ||||| || | ||||||||||| ||||| | | |||||||||| || || ||| Sbjct 87036 GCAATTCACGGAGCAACAGTAGAGAACACTCTTTTTGAAGATGGTGACGGTGCGAACACT 86977 Query 169134 TTCAAAGCATTTGACAGCACTCAGGAAGAGGAGACCTATTCAATGGTTACTGCAAACCGT 169193 ||| ||||| || || || | || ||||| || || ||||| || || |||||| Sbjct 86976 TTCCGTGCATTCAACCCAACGCAAGCCGAAGAGACATACTCTATGGTAACAGCTAACCGT 86917 Query 169194 TTCTGGTCTCAGATCTTTGGTATTGCGTTCAGTAATAAGAGGTGGTTGCATTTCTTTATG 169253 || ||||| || ||||||||| | || ||| || || | ||| | |||||||||||| Sbjct 86916 TTTTGGTCACAAATCTTTGGTGTAGCTTTCTCAAACAAACGTTGGCTTCATTTCTTTATG 86857 Query 169254 CTGTTTGTTCCTGTTATGGGTCTTTGGACAAGTTCCATCGGTATTATTGGTCTTGCTCTC 169313 || ||||| ||||| | |||||||||| ||| | || ||| |||| || |||||||| Sbjct 86856 CTTTTTGTCCCTGTAACTGGTCTTTGGATGAGTGCAATTGGTGTTATCGGACTTGCTCTT 86797 Query 169314 AACCTTCGTGCTTATGACTTTGTTTCCCAAGAGATCAGAGCAGCAGAAGATCCAGAGTTT 169373 ||| | || || |||||||||||||| ||||||||| | ||||| || || || || || Sbjct 86796 AACTTACGAGCATATGACTTTGTTTCACAAGAGATCCGTGCAGCTGAGGACCCTGAATTC 86737 Query 169374 GAGACGTTCTACACCAAGAACATCCTCTTGAACGAAGGTCTTCGTGCATGGTTAGCACCT 169433 ||||| |||||||| || ||||| || | ||||||||| || | |||||| | || || Sbjct 86736 GAGACTTTCTACACAAAAAACATTCTTCTAAACGAAGGTATTAGAGCATGGATGGCGGCT 86677 Query 169434 ATTGATCAACCTCATGAGAACTTTGTGTTCCCTGAGGAAGTACTTCCCCGAGGTAATGCC 169493 || || || ||||| || |||| ||||| ||||| || | || || || || || Sbjct 86676 CAGGACCAGCCACATGAAAAACTTGTATTCCCAGAGGAGGTTTTACCACGTGGAAACGCT 86617 Query 169494 CT 169495 || Sbjct 86616 CT 86615 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 560607257194400