Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Coccomyxa_20sp._20LA000219_20[genbank_20GCA_5F000812005.1_202015-01- 02] 106 sequences; 48,546,496 total letters Query= NC_015288.1 Length=191195 Score E Sequences producing significant alignments: (Bits) Value seq18 895 0.0 seq17 607 1e-168 >seq18 Length=145863 Score = 895 bits (992), Expect = 0.0 Identities = 791/985 (80%), Gaps = 2/985 (0%) Strand=Plus/Minus Query 181794 TTCTGCGAGTGGGTTACATCTACCAACAATCGTCTCTATGTCGGTTGGTTTGGTGTGCTG 181853 ||||| || |||||||| || | || || || || | |||||||||||||| || Sbjct 120631 TTCTGTGAATGGGTTACTAGCACTGAAAACCGCCTTTACATTGGTTGGTTTGGTGTTCTA 120572 Query 181854 ATGATCCCAACTCTGTTGGCGGCAACCATCTGT-TTCATCGTTGCTTTCGTAGCAGCACC 181912 |||||||| ||||| || | ||||| ||||| ||||| | || || || || ||||| Sbjct 120571 ATGATCCCTACTCTTTTAACTGCAACT-TCTGTGTTCATTATCGCATTTGTTGCTGCACC 120513 Query 181913 TCCTGTCGATATCGACGGTATCCGCGAACCCGTAGCTGGTTCACTCATGTATGGTAACAA 181972 |||||| || ||||| |||||||| || || ||| | ||||| || | || |||||||| Sbjct 120512 TCCTGTAGACATCGATGGTATCCGTGAGCCTGTATCAGGTTCTCTACTTTACGGTAACAA 120453 Query 181973 CATCATCTCTGGTGCTGTTGTCCCATCCTCCAACGCAATTGGTCTTCACTTCTACCCAAT 182032 |||||| |||||||||||||| || | || |||||||||||||| |||||||||||||| Sbjct 120452 CATCATTTCTGGTGCTGTTGTTCCTACATCAAACGCAATTGGTCTGCACTTCTACCCAAT 120393 Query 182033 CTGGGAAGCTGCCTCACTTGATGAGTGGCTGTATAACGGTGGTCCTTTCCAACTGGTTGT 182092 ||||||||||| |||||||| || ||||| || ||||||||||||| |||||| | || Sbjct 120392 TTGGGAAGCTGCTTCACTTGACGAATGGCTTTACAACGGTGGTCCTTACCAACTAATCGT 120333 Query 182093 TTTCCACTTCCTGATCGGCATCTACGCCTACATGGGACGTGAGTGGGAACTTTCTTACCG 182152 | |||||| | | ||||| | | ||||||||| ||||||||||||||||||| ||| Sbjct 120332 ATGTCACTTCTTCCTAGGCATTTGCTGCTACATGGGTCGTGAGTGGGAACTTTCTTTCCG 120273 Query 182153 CTTAGGTATGCGTCCCTGGATCTGTGTAGCATACTCTGCTCCAGTCGCTGCAGCATCTGC 182212 ||||| |||||||| |||||| |||||| |||||||| ||||| || || || |||| Sbjct 120272 TTTAGGAATGCGTCCATGGATCGCTGTAGCTTACTCTGCACCAGTTGCAGCTGCTACTGC 120213 Query 182213 TGTATTCTTAGTCTATCCTTTCGGTCAAGGTTCGTTCTCCGATGCAATGCCCCTCGGAAT 182272 ||||||| | |||| ||| ||||||||||||| ||||| |||| ||||| | || || Sbjct 120212 TGTATTCATCATCTACCCTATCGGTCAAGGTTCATTCTCAGATGGTATGCCTTTGGGTAT 120153 Query 182273 CTCAGGAACATTCAACTATATGTTGGTTTTCCAAGCTGAGCACAACATTCTTATGCATCC 182332 |||||||| ||||||| ||| | ||||||||||||||||||||||| |||||||| || Sbjct 120152 TTCAGGAACTTTCAACTTCATGATTGTTTTCCAAGCTGAGCACAACATCCTTATGCACCC 120093 Query 182333 CTTCCACATGTTGGGTGTAGCAGGTGTATTCGGTGGTTCACTGTTTAGTGCAATGCACGG 182392 ||||||||| | ||||| || ||||| |||||||||||||| || || |||||||| Sbjct 120092 ATTCCACATGCTTGGTGTTGCTGGTGTGTTCGGTGGTTCACTTTTCTCAGCTATGCACGG 120033 Query 182393 TTCTTTGGTTACATCTTCACTCGTCCGTGAGACGACTGAGCAAGAGTCACAGAACTATGG 182452 |||| | || || |||||||| ||||||| || |||||| | || ||| ||| ||| Sbjct 120032 TTCTCTAGTAACTTCTTCACTTATCCGTGAAACTACTGAGAACGAATCAGCAAACGCTGG 119973 Query 182453 TTACAAGTTCGGTCAAGAAGAAGAGACCTATAACATCGTTGCAGCCCATGGCTACTTCGG 182512 |||||| ||||||||||||||||| || || ||||| ||||| || || || ||||| || Sbjct 119972 TTACAAATTCGGTCAAGAAGAAGAAACTTACAACATTGTTGCTGCACACGGTTACTTTGG 119913 Query 182513 TCGTTTGATCTTCCAATACGCATCATTCAACAACTCCCGTTCCTTGCACTTCTTCCTTGC 182572 |||| | |||||||||||||| |||||||||||||| ||||| | |||||||||||||| Sbjct 119912 TCGTCTAATCTTCCAATACGCTTCATTCAACAACTCTCGTTCACTTCACTTCTTCCTTGC 119853 Query 182573 TGCATGGCCTGTTGTTGGAATCTGGTTCACCGCACTTGGTGTCTCCACGATGGCATTCAA 182632 ||| |||||||| ||||| |||||||| || || |||||| |||| || ||||||||||| Sbjct 119852 TGCTTGGCCTGTAGTTGGTATCTGGTTTACTGCTCTTGGTATCTCTACTATGGCATTCAA 119793 Query 182633 CCTCAACGGTTTCAACTTCAACCAGTCCATCCTTGATGGTCAGGGTCGTGTCCTTAACAC 182692 ||| ||||| ||||||||||||||||| | | || ||| ||||| || | ||||| Sbjct 119792 CCTTAACGGATTCAACTTCAACCAGTCAGTTGTAGACTCTCAAGGTCGCGTTATCAACAC 119733 Query 182693 TTGGGCAGATGTATTGAACCGTGCTGGTCTTGGTATGGAAGTTATGCATGAGCGTAACGC 182752 ||||| || | | |||||||| |||||||||||||| ||||| || | ||||| Sbjct 119732 TTGGGGTGACATCATCAACCGTGCCAACCTTGGTATGGAAGTAATGCACGAAAGAAACGC 119673 Query 182753 ACACAACTTCCCACTAGATCTTGCT 182777 |||||||||||||||||| |||||| Sbjct 119672 ACACAACTTCCCACTAGACCTTGCT 119648 >seq17 Length=88650 Score = 607 bits (672), Expect = 1e-168 Identities = 755/1028 (73%), Gaps = 12/1028 (1%) Strand=Plus/Minus Query 183178 TGGTTCGATGTCCTTGATGACTGGGTTAAACGCGATCGCTTTGTCTTTGTGGGCTGGTCT 183237 ||||| |||| | ||||||||| | || || || ||||| || || ||||||||| Sbjct 87630 TGGTTTGATGAAGTAGATGACTGGTTGCGCCGTGAACGATTTGTGTTCGTTGGCTGGTCT 87571 Query 183238 GGACTCCTACTTCTTCCC-ACTGCTTATCTTGCCATTGGCGGTTGGCTTACTGGCACAGC 183296 || || |||| |||||| || ||||| ||||| | || || ||| | || || || | Sbjct 87570 GGTCTGTTACT-CTTCCCTACAGCTTACCTTGCATTAGGTGGCTGGTTGACAGGAACCAC 87512 Query 183297 TTTTGTTACGAGTTGGTATACCCATGGACTTGCTTCTTCCTATCTTGAAGG-TGCTAACT 183355 || ||||| |||||| || ||||||||||| ||| || | ||||| ||| |||| Sbjct 87511 ATTCGTTACATCTTGGTACACACATGGACTTGCAAGTTCTTACTTAGAAGGATGC-AACT 87453 Query 183356 TTCTTACGGCAGCTGTCTCGACGCCTGCTGACGCTATGGGTCATTCTCTTCTGTTACTTT 183415 | | || ||||| || || || || || || |||||||| || | |||| || | Sbjct 87452 TCTTAACAGCAGCCGTTTCAACTCCAGCAAACAGCATGGGTCACTCATTGTTGTTCCTAT 87393 Query 183416 GGGGTCCTGAGTCTCAAGGGGACTTTCAACGCTGGTGCCAACTTGGGGGACTCTGGAATT 183475 |||| |||||| | ||||| |||||| |||||||| || | || || || ||| || Sbjct 87392 GGGGGCCTGAGGCACAAGGTGACTTTACTCGCTGGTGTCAGTTGGGTGGTCTGTGGGCTT 87333 Query 183476 TTGTGGCACTCCACGGTGCCTTTGCTCTCATTGGTTTCATGCTTCGACAGTTTGAACTTG 183535 | || || | || ||||||||||| || ||||| || ||||| |||||||||||||||| Sbjct 87332 TCGTAGCTTTACATGGTGCCTTTGCGCTTATTGGGTTTATGCTACGACAGTTTGAACTTG 87273 Query 183536 CTCGCTTGATTGGTA----TCCGTCCTTACAATGCTATTGCGTTCTCTGGTCCTATTGCT 183591 | | || |||| | ||||||||||| |||||||| ||||| | ||||||||| Sbjct 87272 CAAG----ATCGGTAAAGCTTCGTCCTTACAACGCTATTGCCTTCTCAGCACCTATTGCT 87217 Query 183592 GTTTTTGTCAGTGTATTCCTTATCTATCCACTGGGTCAGTCTTCATGGTTCTTTGCACCT 183651 || || || || |||||||||||||| |||| || || ||||||||||| ||| Sbjct 87216 GTCTTCGTATCAGTCTTCCTTATCTATCCTTTGGGACAATCAGGCTGGTTCTTTGCGCCT 87157 Query 183652 AGTTTCGGGGTAGCAGCAATCTTTAGATTCCTATTGTTCCTTCAGGGTTTCCACAACTGG 183711 || || || ||||| |||||||| |||| | | ||| | || ||||||||||||||| Sbjct 87156 AGCTTTGGTGTAGCGGCAATCTTCCGATTTATTCTTTTCTTCCAAGGTTTCCACAACTGG 87097 Query 183712 ACGTTAAACCCCTTCCATATGATGGGAGTTGCTGGTATACTAGGAGGAGCACTACTCAGT 183771 ||| | ||||| ||||| |||||||| || || ||| | ||||| | ||||| || || Sbjct 87096 ACGCTTAACCCTTTCCACATGATGGGTGTGGCAGGTGTTCTAGGTGCTGCACTTCTATGT 87037 Query 183772 GCTATCCATGGTGTCACAGTAGAGAATACATTGTATGAAGATGGAGAACAAGCAAACACA 183831 || || || || | ||||||||||| || | | ||||||||| || || ||||| Sbjct 87036 GCAATTCACGGAGCAACAGTAGAGAACACTCTTTTTGAAGATGGTGACGGTGCGAACACT 86977 Query 183832 TTCAAGGCATTTGATTCCACTCAAGAAGAAGAGACGTATTCTATGGTTACAGCGAATCGT 183891 ||| ||||| | | || |||| |||||||| || |||||||| ||||| || ||| Sbjct 86976 TTCCGTGCATTCAACCCAACGCAAGCCGAAGAGACATACTCTATGGTAACAGCTAACCGT 86917 Query 183892 TTCTGGTCACAAATCTTCGGGGTTGCGTTTAGCAATAAGCGTTGGTTGCACTTCTTTATG 183951 || |||||||||||||| || || || || || || |||||| | || ||||||||| Sbjct 86916 TTTTGGTCACAAATCTTTGGTGTAGCTTTCTCAAACAAACGTTGGCTTCATTTCTTTATG 86857 Query 183952 TTGTTTGTTCCTGTCATGGGTCTTTGGGTCTCTTCTATTGGCATCATTGGGCTTGCTCTT 184011 | ||||| ||||| | ||||||||| | | | ||||| | || || ||||||||| Sbjct 86856 CTTTTTGTCCCTGTAACTGGTCTTTGGATGAGTGCAATTGGTGTTATCGGACTTGCTCTT 86797 Query 184012 AATCTTCGTGCTTATGATTTTGTAAGTCAAGAGATCAGAGCAGCAGAAGATCCAGAATTT 184071 || | || || ||||| ||||| ||||||||| | ||||| || || || ||||| Sbjct 86796 AACTTACGAGCATATGACTTTGTTTCACAAGAGATCCGTGCAGCTGAGGACCCTGAATTC 86737 Query 184072 GAGACGTTCTACACAAAGAACATACTTCTTAATGAAGGACTACGTGCATGGTTAGCACCT 184131 ||||| ||||||||||| ||||| ||||| || ||||| | | |||||| | || || Sbjct 86736 GAGACTTTCTACACAAAAAACATTCTTCTAAACGAAGGTATTAGAGCATGGATGGCGGCT 86677 Query 184132 TCTGATCAACCACATGAGAATTTTATATTTCCAGAGGAGGTATTACCTAGAGGCAATGCT 184191 || || |||||||| || || |||| ||||||||||| ||||| | || || ||| Sbjct 86676 CAGGACCAGCCACATGAAAAACTTGTATTCCCAGAGGAGGTTTTACCACGTGGAAACGCT 86617 Query 184192 CTTTGATG 184199 |||| ||| Sbjct 86616 CTTTAATG 86609 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 611695189502800