Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Coccomyxa_20sp._20LA000219_20[genbank_20GCA_5F000812005.1_202015-01- 02] 106 sequences; 48,546,496 total letters Query= NC_015289.1 Length=176184 Score E Sequences producing significant alignments: (Bits) Value seq18 737 0.0 seq17 565 3e-156 >seq18 Length=145863 Score = 737 bits (816), Expect = 0.0 Identities = 762/990 (77%), Gaps = 12/990 (1%) Strand=Plus/Minus Query 164764 TTTTGCGAGTGGGTGACTTCCACCAATAACCGTCTTTATGTCGGTTGGTTCGGTGTTCTT 164823 || || || ||||| ||| ||| | ||||| ||||| | |||||||| |||||||| Sbjct 120631 TTCTGTGAATGGGTTACTAGCACTGAAAACCGCCTTTACATTGGTTGGTTTGGTGTTCTA 120572 Query 164824 ATGATCCC--CTGTTTGCTCGCCGCTACAATTTGTTTT-ATTACTGCATTCATCGCTGCT 164880 |||||||| || ||| | | || || | ||| || |||| ||||| | ||||| Sbjct 120571 ATGATCCCTACTCTTT--TAACTGCAACT-TCTGTGTTCATTATCGCATTTGTTGCTGCA 120515 Query 164881 CCCCCTGTGGACATTGATGGTATTCGTGAACCTGTCGCAGGTTCTCTAATGTACGGTAAC 164940 || ||||| ||||| |||||||| ||||| ||||| ||||||||||| | ||||||||| Sbjct 120514 CCTCCTGTAGACATCGATGGTATCCGTGAGCCTGTATCAGGTTCTCTACTTTACGGTAAC 120455 Query 164941 AACATCATCTCTGGTGCTGTCGTTCCGTCTTCTAACGCAATCGGACTTCACTTCTATCCT 165000 |||||||| ||||||||||| ||||| | || |||||||| || || |||||||| || Sbjct 120454 AACATCATTTCTGGTGCTGTTGTTCCTACATCAAACGCAATTGGTCTGCACTTCTACCCA 120395 Query 165001 ATTTGGGAAGCTGCAACCATGGATGAATGGTTGTACAACGGTGGTCCTTACCAGTTGGTT 165060 |||||||||||||| | | || |||||| | |||||||||||||||||||| | | Sbjct 120394 ATTTGGGAAGCTGCTTCACTTGACGAATGGCTTTACAACGGTGGTCCTTACCAACTAATC 120335 Query 165061 GTCTTCCACTTCCTCATCGGTGTAGCTTGCTACATGGGTCGTGAGTGGGAACTGTCTTAC 165120 || | |||||| || | || | |||||||||||||||||||||||||| |||| | Sbjct 120334 GTATGTCACTTCTTCCTAGGCATTTGCTGCTACATGGGTCGTGAGTGGGAACTTTCTTTC 120275 Query 165121 CGCCTCGGTATGCGTCCTTGGATTTGCGTAGCATATAGCGCACCTGTCGCTGCTGCTGCC 165180 || | || |||||||| ||||| ||||| || ||||| || || |||||| | Sbjct 120274 CGTTTAGGAATGCGTCCATGGATCGCTGTAGCTTACTCTGCACCAGTTGCAGCTGCTACT 120215 Query 165181 GCAGTTTTCCTGGTCTATCCTTTCGGTCAAGGGAGTTTCTCTGATGGTATGCCTCTTGGT 165240 || || ||| | |||| ||| |||||||||| ||||| |||||||||||| | ||| Sbjct 120214 GCTGTATTCATCATCTACCCTATCGGTCAAGGTTCATTCTCAGATGGTATGCCTTTGGGT 120155 Query 165241 ATCTCTGGTACTTTTAACTATATGTTCGTCTTCCAAGCAGAACATAACATTCTTATGCAT 165300 || || || ||||| |||| ||| | || |||||||| || || ||||| |||||||| Sbjct 120154 ATTTCAGGAACTTTCAACTTCATGATTGTTTTCCAAGCTGAGCACAACATCCTTATGCAC 120095 Query 165301 CCGTTCCACATGCTCGGCGTTGCTGGGGTATTCGGTGGATCTCTTTTCTCTGCTATGCAT 165360 || ||||||||||| || |||||||| || |||||||| || |||||||| |||||||| Sbjct 120094 CCATTCCACATGCTTGGTGTTGCTGGTGTGTTCGGTGGTTCACTTTTCTCAGCTATGCAC 120035 Query 165361 GGAAGTCTTGTTACTTCCTCACTCGTCCGCGAGACAACTGA-AACAGAGAGTCAG--AAC 165417 || ||| || ||||| ||||| |||| || || ||||| ||| || |||| ||| Sbjct 120034 GGTTCTCTAGTAACTTCTTCACTTATCCGTGAAACTACTGAGAAC---GAATCAGCAAAC 119978 Query 165418 TACGGTTATAAGTTTGGACAAGAAGAAGAGACCTATAACATCGTCGCTGCCCACGGGTAC 165477 ||||| || || || ||||||||||| || || ||||| || ||||| ||||| ||| Sbjct 119977 GCTGGTTACAAATTCGGTCAAGAAGAAGAAACTTACAACATTGTTGCTGCACACGGTTAC 119918 Query 165478 TTCGGTCGTCTCATTTTCCAATACGCATCCTTCAACAATTCCCGTTCGCTGCACTTCTTC 165537 || |||||||| || ||||||||||| || |||||||| || ||||| || ||||||||| Sbjct 119917 TTTGGTCGTCTAATCTTCCAATACGCTTCATTCAACAACTCTCGTTCACTTCACTTCTTC 119858 Query 165538 CTCGCAGCATGGCCTGTAGTTGGTATCTGGTTCACTGCTCTTGGTGTTAGCACCATGGCA 165597 || || || ||||||||||||||||||||||| |||||||||||| | || |||||| Sbjct 119857 CTTGCTGCTTGGCCTGTAGTTGGTATCTGGTTTACTGCTCTTGGTATCTCTACTATGGCA 119798 Query 165598 TTCAACCTGAACGGTTTCAACTTCAACCAGTCTATTGTTGATAGTCAGAACAAAATCATC 165657 |||||||| ||||| ||||||||||||||||| |||| || ||| | ||| Sbjct 119797 TTCAACCTTAACGGATTCAACTTCAACCAGTCAGTTGTAGACTCTCAAGGTCGCGTTATC 119738 Query 165658 CCTACTTGGGCTGACGTTCTGAACCGTGCTGGTCTGGGTATGGAAGTTATGCATGAGCGT 165717 ||||||| |||| | | |||||||| || ||||||||||| ||||| || | Sbjct 119737 AACACTTGGGGTGACATCATCAACCGTGCCAACCTTGGTATGGAAGTAATGCACGAAAGA 119678 Query 165718 AACGCTCACAACTTCCCCCTCGACCTCGCT 165747 ||||| ||||||||||| || ||||| ||| Sbjct 119677 AACGCACACAACTTCCCACTAGACCTTGCT 119648 >seq17 Length=88650 Score = 565 bits (626), Expect = 3e-156 Identities = 746/1024 (73%), Gaps = 8/1024 (1%) Strand=Plus/Minus Query 166158 TGGTTCGATGTCCTTGACGACTGGCTTAAACGAGATCGTTTCGTTTTTGTTGGTTGGTCT 166217 ||||| |||| | || |||||| | || || || || || || ||||| |||||| Sbjct 87630 TGGTTTGATGAAGTAGATGACTGGTTGCGCCGTGAACGATTTGTGTTCGTTGGCTGGTCT 87571 Query 166218 GGACTTCTTCTTCTTCCC-ACTGCTTATCTTGCTATTGGCGGTTGGCTCACTGGGACTAC 166276 || || | || |||||| || ||||| ||||| | || || ||| | || || || || Sbjct 87570 GGTCTGTTACT-CTTCCCTACAGCTTACCTTGCATTAGGTGGCTGGTTGACAGGAACCAC 87512 Query 166277 TTTCGTCACGAGTTGGTATACTCATGGACTCGCAAGCAGTTATCTGGAGGG-TGCAAACT 166335 ||||| || |||||| || |||||||| ||||| ||| | || || ||||| || Sbjct 87511 ATTCGTTACATCTTGGTACACACATGGACTTGCAAGTTCTTACTTAGAAGGATGCAA-CT 87453 Query 166336 TTCTTACTGCGGCAGTTTCTACTCCAGCAGATGCTATGGGTCATTCTCTACTTCTTCTCT 166395 | | || || || ||||| ||||||||| | |||||||| || | | | || | Sbjct 87452 TCTTAACAGCAGCCGTTTCAACTCCAGCAAACAGCATGGGTCACTCATTGTTGTTCCTAT 87393 Query 166396 GGGGTCCTGAGGCTCAAGGGGA-TTTCGTCAGGTGGTGCCAACTTGGAGGGCTTTGGGCC 166454 |||| |||||||| ||||| || ||| || | ||||| || | || || || ||||| Sbjct 87392 GGGGGCCTGAGGCACAAGGTGACTTTACTC-GCTGGTGTCAGTTGGGTGGTCTGTGGGCT 87334 Query 166455 TTTGTTGCTCTCCACGGTGCTTTTGCCCTAATTGGTTTCATGCTTCGGCAGTTTGAAATC 166514 || || ||| | || ||||| ||||| || ||||| || ||||| || ||||||||| | Sbjct 87333 TTCGTAGCTTTACATGGTGCCTTTGCGCTTATTGGGTTTATGCTACGACAGTTTGAACTT 87274 Query 166515 GCTCGTCTAGTAGGTATTCGTCCGTACAATGCAATCGCTTTTTCTGGTCCTATTGCTGTC 166574 || | ||| ||||||| ||||| || || || || || | |||||||||||| Sbjct 87273 GCAAGATCGGTAAAGCTTCGTCCTTACAACGCTATTGCCTTCTCAGCACCTATTGCTGTC 87214 Query 166575 TTCGTTAGTGTCTTTCTCATCTACCCTCTGGGTCAATCGAGTTGGTTTTTCGCTCC-ATC 166633 ||||| ||||| || ||||| ||| |||| ||||| | ||||| || || || | | Sbjct 87213 TTCGTATCAGTCTTCCTTATCTATCCTTTGGGACAATCAGGCTGGTTCTTTGCGCCTAGC 87154 Query 166634 TTTCGGGGTCTCAGCAATCTTCCGATTCCTCCTTTTCCTTCAAGGATTCCACAACTGGAC 166693 ||| || || | |||||||||||||| | |||||| | ||||| |||||||||||||| Sbjct 87153 TTT-GGTGTAGCGGCAATCTTCCGATTTATTCTTTTCTTCCAAGGTTTCCACAACTGGAC 87095 Query 166694 ACTGAACCCATTTCATATGATGGGTGTAGCAGGTATTCTCGGTGGTGCATTGCTTTCTGC 166753 || ||||| || || ||||||||||| |||||| |||| |||| |||| | || | ||| Sbjct 87094 GCTTAACCCTTTCCACATGATGGGTGTGGCAGGTGTTCTAGGTGCTGCACTTCTATGTGC 87035 Query 166754 CATCCATGGTGTTACAGTAGAGAACACTCTGTATCAAGATGGTGAACAGGCAAATACTTT 166813 || || || | ||||||||||||||||| | | |||||||||| || || ||||| Sbjct 87034 AATTCACGGAGCAACAGTAGAGAACACTCTTTTTGAAGATGGTGACGGTGCGAACACTTT 86975 Query 166814 CAAGGCATTCGACTCTACTCAAGAGGAAGAAACCTATTCAATGGTTACAGCAAACCGCTA 166873 | |||||| || | || |||| ||||| || || || ||||| ||||| ||||| | Sbjct 86974 CCGTGCATTCAACCCAACGCAAGCCGAAGAGACATACTCTATGGTAACAGCTAACCGTTT 86915 Query 166874 TTGGTCTCAGATCTTCGGTATTGCGTTTAGTAATAAGAGGTGGTTGCATTTCTTTATGCT 166933 |||||| || ||||| ||| | || || || || | ||| | |||||||||||||| Sbjct 86914 TTGGTCACAAATCTTTGGTGTAGCTTTCTCAAACAAACGTTGGCTTCATTTCTTTATGCT 86855 Query 166934 GTTTGTTCCTGTTATGGGTCTGTGGACAAGTTCCATCGGTATTATTGGTCTTGCTCTCAA 166993 ||||| ||||| | ||||| |||| ||| | || ||| |||| || |||||||| || Sbjct 86854 TTTTGTCCCTGTAACTGGTCTTTGGATGAGTGCAATTGGTGTTATCGGACTTGCTCTTAA 86795 Query 166994 CCTTCGTGCTTATGACTTTGTTTCCCAAGAACTAAGGGCAGCAGAGGATCCTGAGTTTGA 167053 | | || || |||||||||||||| ||||| | | ||||| ||||| ||||| || || Sbjct 86794 CTTACGAGCATATGACTTTGTTTCACAAGAGATCCGTGCAGCTGAGGACCCTGAATTCGA 86735 Query 167054 AACCTTCTATACCAAGAACATTCTCTTGAATGAGGGTATGCGTTCTTGGATGGCAACTAT 167113 || ||||| || || |||||||| | || || ||||| | | |||||||| || Sbjct 86734 GACTTTCTACACAAAAAACATTCTTCTAAACGAAGGTATTAGAGCATGGATGGCGGCTCA 86675 Query 167114 CGATCAACCTCATGAGAGTTTCGTATTCCCTGAAGAGGTTCTTCCTAGAGGTAACGCTCT 167173 || || || ||||| | | |||||||| || |||||| | || | || |||||||| Sbjct 86674 GGACCAGCCACATGAAAAACTTGTATTCCCAGAGGAGGTTTTACCACGTGGAAACGCTCT 86615 Query 167174 CTAA 167177 ||| Sbjct 86614 TTAA 86611 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 563660053149440