Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Coccomyxa_20sp._20LA000219_20[genbank_20GCA_5F000812005.1_202015-01- 02] 106 sequences; 48,546,496 total letters Query= NC_015290.1 Length=182180 Score E Sequences producing significant alignments: (Bits) Value seq18 719 0.0 >seq18 Length=145863 Score = 719 bits (796), Expect = 0.0 Identities = 748/977 (77%), Gaps = 8/977 (1%) Strand=Plus/Minus Query 169695 TGATTGGGTAACAAGCACAAACAACCGCATCTATGTTGGTTGGTTCGGTGTCTTGATGAT 169754 ||| ||||| || ||||| | |||||| | || |||||||||| ||||| | ||||| Sbjct 120626 TGAATGGGTTACTAGCACTGAAAACCGCCTTTACATTGGTTGGTTTGGTGTTCTAATGAT 120567 Query 169755 CCCATGTCTATTAGCAGCAGCAACCTGCTTTATCGTTGCTTTCATCGCAGCTCCACCTGT 169814 ||| ||| ||| | ||| | | || || | || || | || || || ||||| Sbjct 120566 CCCTACTCTTTTAACTGCAACTTCTGTGTTCATTATCGCATTTGTTGCTGCACCTCCTGT 120507 Query 169815 GGACATCGATGGAATCAGAGAACCTGTAGCAGGTTCATTCATGTATGGTAACAACATCAT 169874 ||||||||||| ||| | || |||||| ||||||| | | || |||||||||||||| Sbjct 120506 AGACATCGATGGTATCCGTGAGCCTGTATCAGGTTCTCTACTTTACGGTAACAACATCAT 120447 Query 169875 CTCTGGTGCAGTTGTTCCATCTTCAAACGCAATCGGTCTCCACTTCTATCCTATTTGGGA 169934 |||||||| |||||||| | ||||||||||| ||||| |||||||| || |||||||| Sbjct 120446 TTCTGGTGCTGTTGTTCCTACATCAAACGCAATTGGTCTGCACTTCTACCCAATTTGGGA 120387 Query 169935 AGCAGCAACTCTAGATGAGTGGTTGTATAACGGTGGTCCTTATCAATTAGTTATCTTCCA 169994 ||| || | || || || ||| | || |||||||||||||| ||| || | | | || Sbjct 120386 AGCTGCTTCACTTGACGAATGGCTTTACAACGGTGGTCCTTACCAACTAATCGTATGTCA 120327 Query 169995 CTTCCTTATCGGAATCT-CTGCCTACATGGGTAGACAGTGGGAACTATCATACCGTTTAG 170053 |||| | | || || | |||| ||||||||| | |||||||||| || | |||||||| Sbjct 120326 CTTCTTCCTAGGCATTTGCTGC-TACATGGGTCGTGAGTGGGAACTTTCTTTCCGTTTAG 120268 Query 170054 GTATGCGTCCTTGGATCTGTGTAGCATATTCTGCTCCAGTGTCAGCAGCATTCGCTGTAT 170113 | |||||||| |||||| |||||| || ||||| ||||| |||| || ||||||| Sbjct 120267 GAATGCGTCCATGGATCGCTGTAGCTTACTCTGCACCAGTTGCAGCTGCTACTGCTGTAT 120208 Query 170114 TCTTAGTGTATCCTTTCGGTCAGGGATCTTTCTCAGACGGAATGCCTCTAGGTATCTCAG 170173 || | | || ||| ||||||| || || |||||||| || |||||| | ||||| |||| Sbjct 120207 TCATCATCTACCCTATCGGTCAAGGTTCATTCTCAGATGGTATGCCTTTGGGTATTTCAG 120148 Query 170174 GTACATTTAACTTCATGTTCGTATTCCAAGCAGAGCACAACATTCTTATGCACCCATTCC 170233 | || || ||||||||| | || |||||||| ||||||||||| |||||||||||||||| Sbjct 120147 GAACTTTCAACTTCATGATTGTTTTCCAAGCTGAGCACAACATCCTTATGCACCCATTCC 120088 Query 170234 ATATGGCAGGGGTTGCTGGTATGTTCGGAGGAGCACTCTTCTCAGCAATGCACGGTTCAC 170293 | ||| || ||||||||| ||||||| || |||| |||||||| ||||||||||| | Sbjct 120087 ACATGCTTGGTGTTGCTGGTGTGTTCGGTGGTTCACTTTTCTCAGCTATGCACGGTTCTC 120028 Query 170294 TTGTAACATCTTCTCTAATCAGAGAGACAACAGATAACGAGTCACAGAACTATGGATACA 170353 | ||||| ||||| || ||| | || || || || ||||| ||| ||| ||| |||| Sbjct 120027 TAGTAACTTCTTCACTTATCCGTGAAACTACTGAGAACGAATCAGCAAACGCTGGTTACA 119968 Query 170354 AATTCGGACAAGAAGAAGAAACATACAACATTGTTGCAGCACATGGATACTTTGGTAGAC 170413 ||||||| |||||||||||||| |||||||||||||| ||||| || ||||||||| | | Sbjct 119967 AATTCGGTCAAGAAGAAGAAACTTACAACATTGTTGCTGCACACGGTTACTTTGGTCGTC 119908 Query 170414 TTATCTTCCAATATGCTAGCTTTAACAATAGTCGTAGTCTTCACTTCTTCCTTGCTACAT 170473 | ||||||||||| ||| || ||||| |||| |||||||||||||||||| | | Sbjct 119907 TAATCTTCCAATACGCTTCATTCAACAACTCTCGTTCACTTCACTTCTTCCTTGCTGCTT 119848 Query 170474 TCCCTGTAGTATGCATCTGGTTAACTTCAATGGGTATTTGCACAATGGCATTTAACCTTA 170533 |||||||| | |||||||| ||| | | ||||| | || |||||||| ||||||| Sbjct 119847 GGCCTGTAGTTGGTATCTGGTTTACTGCTCTTGGTATCTCTACTATGGCATTCAACCTTA 119788 Query 170534 ATGGATTTAACTTCAACCAGTCAATCGTAGATGGATCT---GGTAAAGTAGTTCCTACAT 170590 | ||||| ||||||||||||||| | ||||| ||| ||| || | || | Sbjct 119787 ACGGATTCAACTTCAACCAGTCAGTTGTAGA---CTCTCAAGGTCGCGTTATCAACACTT 119731 Query 170591 GGGCAGACGTTCTTAACAGAGCAAACCTAGGTATGGAAGTAATGCATGAGCGTAATGCAC 170650 ||| ||| | | ||| | || ||||| ||||||||||||||||| || | || |||| Sbjct 119730 GGGGTGACATCATCAACCGTGCCAACCTTGGTATGGAAGTAATGCACGAAAGAAACGCAC 119671 Query 170651 ACAACTTCCCACTTGAC 170667 ||||||||||||| ||| Sbjct 119670 ACAACTTCCCACTAGAC 119654 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 582847227726400