Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Coccomyxa_20sp._20LA000219_20[genbank_20GCA_5F000812005.1_202015-01- 02] 106 sequences; 48,546,496 total letters Query= NC_015326.1 Length=346754 Score E Sequences producing significant alignments: (Bits) Value seq100 129 1e-24 seq99 91.5 3e-13 >seq100 Length=2336451 Score = 129 bits (142), Expect = 1e-24 Identities = 143/191 (75%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 || ||||| || |||||||| || || || ||||| ||||| || || | ||||| || Sbjct 981202 ACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGCCAGCGTGCGGCCATCCTCC 981143 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 |||||||| || || ||||| || || || ||||| ||||||||||| || ||||| || Sbjct 981142 AGCTGCTTGCCGGCAAAGATCAGGCGCTGCTGGTCCGGAGGAATGCCCTCCTTGTCCTGG 981083 Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTT 195111 || || ||| |||||||| |||||||| || ||||| || || || | ||||| Sbjct 981082 ATCTTGCTCTTCACGTTCTCGATGGTGTCAGAGGACTCCACCTCCAGTGTGATGGTCTTG 981023 Query 195112 CCTGTCAAAGT 195122 || || | ||| Sbjct 981022 CCAGTGAGAGT 981012 >seq99 Length=2590953 Score = 91.5 bits (100), Expect = 3e-13 Identities = 132/185 (71%), Gaps = 1/185 (1%) Strand=Plus/Minus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 || ||||| || ||||||||| | || | || || ||||| || | | | || || Sbjct 315568 ACCAGGTGGAGGATGGACTCTTCTGGA-TGTTATAGTCGGCCAGGGGGCGGCTGTCCTCT 315510 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 ||||||||||| || ||||| || || | ||||| || || ||||| || ||||| || Sbjct 315509 AGCTGCTTACCGGCAAAGATCAGGCGCTACTGGTCCGGGGGGATGCCCTCCTTGTCCTGG 315450 Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTT 195111 | || |||||||||||| |||||||| || ||||| || | ||| | ||||| Sbjct 315449 ACCTTGGACTTGACGTTCTCGATGGTGTCAGATGACTCCACCTCCAAGGTGATGGTCTTG 315390 Query 195112 CCTGT 195116 || || Sbjct 315389 CCGGT 315385 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1109480093185302