Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Coccomyxa_20sp._20LA000219_20[genbank_20GCA_5F000812005.1_202015-01- 02] 106 sequences; 48,546,496 total letters Query= NC_015569.1 Length=178563 Score E Sequences producing significant alignments: (Bits) Value seq18 796 0.0 >seq18 Length=145863 Score = 796 bits (882), Expect = 0.0 Identities = 775/993 (78%), Gaps = 6/993 (1%) Strand=Plus/Plus Query 83967 ACTGACGCAAGATCCAACGGGAAGTTATGTGCGTTACGTTCGTGCATCACTTCCATACCA 84026 ||||| ||||| || | |||||||| |||||||| | ||||||||| |||||||||||| Sbjct 119643 ACTGAAGCAAGGTCTAGTGGGAAGTTGTGTGCGTTTCTTTCGTGCATTACTTCCATACCA 119702 Query 84027 AGCCCGGCACGATTAAGTACATCGGCCCAGGTATTGACAACACGGTTTTGGCTATCGACA 84086 || |||||| || | | || |||| || |||| ||| || ||| || ||| Sbjct 119703 AGGTTGGCACGGTTGATGATGTCACCCCAAGTGTTGATAACGCGACCTTGAGAGTCTACA 119762 Query 84087 AGACTCTGATTGAAGTTAAATCCATTCAGATTAAATGCCATGGTGCTAACACCCAGAGCA 84146 | ||| |||||||| ||||| || || || |||||||| || | ||| |||||| Sbjct 119763 ACTGACTGGTTGAAGTTGAATCCGTTAAGGTTGAATGCCATAGTAGAGATACCAAGAGCA 119822 Query 84147 GCAAACCAAATGCCAACCACTGGCCAAGCAGCCAAGAAAAAGTGGAGAGAACGACTATTG 84206 | |||||| || ||||| || ||||||||||| | ||| ||||| || |||||| ||| Sbjct 119823 GTAAACCAGATACCAACTACAGGCCAAGCAGCAAGGAAGAAGTGAAGTGAACGAGAGTTG 119882 Query 84207 TTGAAGGAAGCATACTGGAAGATAAGACGACCGAAGTAGCCGTGAGCAGCAACAATATTA 84266 ||||| ||||| || |||||||| |||||||| ||||| ||||| ||||||||||| || Sbjct 119883 TTGAATGAAGCGTATTGGAAGATTAGACGACCAAAGTAACCGTGTGCAGCAACAATGTTG 119942 Query 84267 TAAGTTTCCTCTTCTTGACCGAACTTGTAACCATAGTTTTGTGAGACATTTTCTGTAGTT 84326 |||||||| |||||||||||||| ||||||||| |||| ||| | || || |||||| Sbjct 119943 TAAGTTTCTTCTTCTTGACCGAATTTGTAACCAGCGTTTGCTGATTCGTTCTCAGTAGTT 120002 Query 84327 TCTCGGATTAGAGAAGAAGTGACAAGTGAACCATGCATTGCAGAGAATAGAGCTCCACCG 84386 || ||||| || |||||||| || || ||||| ||||| || ||||| || | |||||| Sbjct 120003 TCACGGATAAGTGAAGAAGTTACTAGAGAACCGTGCATAGCTGAGAAAAGTGAACCACCG 120062 Query 84387 AATACACCAGCAACTCCCAACATGTGAAAGGGATGCATAAGGATGTTATGTTCCGCCTGG 84446 || ||||||||||| || | |||||| || || |||||||||||||| || || || ||| Sbjct 120063 AACACACCAGCAACACCAAGCATGTGGAATGGGTGCATAAGGATGTTGTGCTCAGCTTGG 120122 Query 84447 AAGACAAGCATGTAGTTGAACGTTCCTGAGATACCAAGTGGCATGCCATCAGAGAAAGAA 84506 || |||| |||| ||||||| |||||||| ||||| | ||||| ||||| ||||| ||| Sbjct 120123 AAAACAATCATGAAGTTGAAAGTTCCTGAAATACCCAAAGGCATACCATCTGAGAATGAA 120182 Query 84507 CCTTGCCCGAAAGGATACACAAGGAATACAGCAGATGCCGCTGCAACTGGAGCAGAGTAA 84566 ||||| |||| ||| || | | ||||||||||| || ||||||||||| ||||||||| Sbjct 120183 CCTTGACCGATAGGGTAGATGATGAATACAGCAGTAGCAGCTGCAACTGGTGCAGAGTAA 120242 Query 84567 GCAACACAGATCCATGGACGCATACCGAGACGATATGAAAGTTCCCATTCACGACCCATG 84626 || ||| ||||||||||||||| || | ||| | ||||||||||| |||||||||||| Sbjct 120243 GCTACAGCGATCCATGGACGCATTCCTAAACGGAAAGAAAGTTCCCACTCACGACCCATG 120302 Query 84627 TA--AGCAAATGCACCAATCAGGAAGTGAAAGACAACAAGTTGATAAGGTCCACCATTAT 84684 || |||||||| || | | ||||||| | || | ||||| ||||| ||||| || | Sbjct 120303 TAGCAGCAAATG--CCTAGGAAGAAGTGACATACGATTAGTTGGTAAGGACCACCGTTGT 120360 Query 84685 ATAGCCATTCGTCCATACTTGCTGCTTCCCAAATAGGATAGAAATGTAGACCAATAGCAT 84744 | ||||||||||| | || ||||||||||| || ||||| || |||||||| || | Sbjct 120361 AAAGCCATTCGTCAAGTGAAGCAGCTTCCCAAATTGGGTAGAAGTGCAGACCAATTGCGT 120420 Query 84745 TAGAGGATGGAACTACGGCACCAGAAATGATGTTGTTTCCGTACATGAGAGAACCAGCGA 84804 | || | ||||| || |||||||||||||||||||| ||||| | |||||||| | | Sbjct 120421 TTGATGTAGGAACAACAGCACCAGAAATGATGTTGTTACCGTAAAGTAGAGAACCTGATA 120480 Query 84805 CTGGCTCACGGATACCGTCAATATCAACTGGGGGTGCACCAACGAATGCAATGATGAA-A 84863 | |||||||||||||| || || || || || |||||| |||| ||||| || ||||| | Sbjct 120481 CAGGCTCACGGATACCATCGATGTCTACAGGAGGTGCAGCAACAAATGCGATAATGAACA 120540 Query 84864 CAGACAGTGGCAGCAAGTAGAGTTGGAATCATAAGAGTTCCAAACCAACCAACATAGATA 84923 |||| ||| |||| | ||||| || ||||| ||| ||||||||||||| || | Sbjct 120541 CAGA-AGTTGCAGTTAAAAGAGTAGGGATCATTAGAACACCAAACCAACCAATGTAAAGG 120599 Query 84924 CGGTTGTTAGTGGAGGTGACCCAATCACAGAAG 84956 ||||| | |||| || ||||| ||||||||| Sbjct 120600 CGGTTTTCAGTGCTAGTAACCCATTCACAGAAG 120632 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 571272843062480