Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Coccomyxa_20sp._20LA000219_20[genbank_20GCA_5F000812005.1_202015-01- 02] 106 sequences; 48,546,496 total letters Query= NC_016656.1 Length=45890 Score E Sequences producing significant alignments: (Bits) Value seq18 491 1e-134 >seq18 Length=145863 Score = 491 bits (544), Expect = 1e-134 Identities = 711/992 (72%), Gaps = 10/992 (1%) Strand=Plus/Minus Query 25802 TTTTGTGAGTGGGTTACAAGTACTGAGAACCGTCTCTATGTGGGATGGTTCGGGGTGCTT 25861 || ||||| |||||||| || ||||| ||||| || || | || ||||| || || || Sbjct 120631 TTCTGTGAATGGGTTACTAGCACTGAAAACCGCCTTTACATTGGTTGGTTTGGTGTTCTA 120572 Query 25862 ATGATACCCTGCT-TACTCGCAGCCACTACATGTTTT-ATACTTGCCTTCATCGCAGCAC 25919 ||||| |||| || | | | || ||| | ||| || || | || || | || |||| Sbjct 120571 ATGAT-CCCTACTCTTTTAACTGCAACTTC-TGTGTTCATTATCGCATTTGTTGCTGCAC 120514 Query 25920 CGCCTGTAGATATAGATGGCATACGTGAGCCAGTTTCCGGCTCGTTAATGTACGGAAACA 25979 | |||||||| || ||||| || |||||||| || || || || || | ||||| |||| Sbjct 120513 CTCCTGTAGACATCGATGGTATCCGTGAGCCTGTATCAGGTTCTCTACTTTACGGTAACA 120454 Query 25980 ATATAATATCAGGAGCAGTCGTCCCCTCCTCTAACGCAATCGGACTACATTTTTACCCGA 26039 | || || || || || || || || | || |||||||| || || || || ||||| | Sbjct 120453 ACATCATTTCTGGTGCTGTTGTTCCTACATCAAACGCAATTGGTCTGCACTTCTACCCAA 120394 Query 26040 TCTGGGAAGCTGGCACACTGGACGAGTGGCTATACAATGGCGGACCATATCAACTCATTA 26099 | |||||||||| |||| ||||| ||||| ||||| || || || || ||||| || Sbjct 120393 TTTGGGAAGCTGCTTCACTTGACGAATGGCTTTACAACGGTGGTCCTTACCAACTAATCG 120334 Query 26100 TCTTCCACTTCTTAATAGG-AGTAGCAGC-ATATGCAGGGAGACAGTGGGAACTATCTTA 26157 | | |||||||| |||| | | || || | ||| || | |||||||||| |||| Sbjct 120333 TATGTCACTTCTTCCTAGGCATTTGCTGCTACATG--GGTCGTGAGTGGGAACTTTCTTT 120276 Query 26158 CAGACTAGGAATGAGACCATGGATATTTGTTGCATATACAGCACCACTATCCGCAGCTCT 26217 | | |||||||| | |||||||| ||| || || | |||||| | | || ||| Sbjct 120275 CCGTTTAGGAATGCGTCCATGGATCGCTGTAGCTTACTCTGCACCAGTTGCAGCTGCTAC 120216 Query 26218 CGCAGTGTTCTTAGTTTATCCTTTCGGACAAGGGAGTTTTAGTGATGGAATGCCTCTTGG 26277 || || ||| | | || ||| |||| ||||| || ||||| |||||| | || Sbjct 120215 TGCTGTATTCATCATCTACCCTATCGGTCAAGGTTCATTCTCAGATGGTATGCCTTTGGG 120156 Query 26278 TATCTCTGGTACTTTTAACTTTATGTTCGTATTCCAAGCAGAACATAATATACTCATGCA 26337 ||| || || ||||| ||||| ||| | || |||||||| || || || || || ||||| Sbjct 120155 TATTTCAGGAACTTTCAACTTCATGATTGTTTTCCAAGCTGAGCACAACATCCTTATGCA 120096 Query 26338 CCCATTCCATATGGCTGGTGTTGCTGGGGTTTTCGGTGGAGCTCTTTTCGCTGCTATGCA 26397 ||||||||| ||| |||||||||||| || |||||||| | |||||| | |||||||| Sbjct 120095 CCCATTCCACATGCTTGGTGTTGCTGGTGTGTTCGGTGGTTCACTTTTCTCAGCTATGCA 120036 Query 26398 CGGAAGTTTGGTTACTTCCTCACTTATTGCAGAAACGACAGAGGAAGTCTCACAGAATTA 26457 ||| | | || ||||| |||||||| ||||| || ||| | | ||| || Sbjct 120035 CGGTTCTCTAGTAACTTCTTCACTTATCCGTGAAACTACTGAGAACGAATCAGCAAACGC 119976 Query 26458 TGGCTATAAGTTTGGGCAAGATGAAGAGACATATAATATTGTCGCTGCACACGGGTACTT 26517 ||| || || || || ||||| ||||| || || || ||||| ||||||||||| ||||| Sbjct 119975 TGGTTACAAATTCGGTCAAGAAGAAGAAACTTACAACATTGTTGCTGCACACGGTTACTT 119916 Query 26518 TGGGAGATTAATTTTTCAGTATGCGAGTTTTAATAACAGCCGTTCTCTTCATTTCTTTCT 26577 ||| | |||| || || || || || || ||| ||||| ||||| ||||| || Sbjct 119915 TGGTCGTCTAATCTTCCAATACGCTTCATTCAACAACTCTCGTTCACTTCACTTCTTCCT 119856 Query 26578 TGCTACTTGGCCGGTTGTTGGCATATGGCTGACATCTATGGGTATCTGCACAATGGCATT 26637 |||| ||||||| || ||||| || ||| | || || | ||||||| || |||||||| Sbjct 119855 TGCTGCTTGGCCTGTAGTTGGTATCTGGTTTACTGCTCTTGGTATCTCTACTATGGCATT 119796 Query 26638 TAACCTAAATGGTTTTAACTTTAACCAGTCAGTAGTAGA-TGTTAATGGAAAGATAATAC 26696 ||||| || || || ||||| ||||||||||| ||||| | | || | | || | Sbjct 119795 CAACCTTAACGGATTCAACTTCAACCAGTCAGTTGTAGACTCTCAAGGTCGCGTTATCAA 119736 Query 26697 CTACATGGGCTGATGTATTAAACCGAGCTAACCTCGGCTTTGAAGTTATGCACGAGCGTA 26756 | || |||| ||| | | ||||| || ||||| || | ||||| |||||||| | | Sbjct 119735 C-ACTTGGGGTGACATCATCAACCGTGCCAACCTTGGTATGGAAGTAATGCACGAAAGAA 119677 Query 26757 ATGCTCATAACTTTCCACTTGACTTAGCATCA 26788 | || || ||||| ||||| ||| | || ||| Sbjct 119676 ACGCACACAACTTCCCACTAGACCTTGCTTCA 119645 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 146726215308144