Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Coccomyxa_20sp._20LA000219_20[genbank_20GCA_5F000812005.1_202015-01- 02] 106 sequences; 48,546,496 total letters Query= NC_016657.1 Length=47055 Score E Sequences producing significant alignments: (Bits) Value seq18 666 0.0 >seq18 Length=145863 Score = 666 bits (738), Expect = 0.0 Identities = 742/986 (75%), Gaps = 6/986 (1%) Strand=Plus/Plus Query 35973 GCTAGGTCAAGTGGGAAGTTGTGTGCGTTACGCTCATGCATAACTTCCATGCCTAAGTCG 36032 || ||||| |||||||||||||||||||| | || ||||| |||||||| || | || | Sbjct 119649 GCAAGGTCTAGTGGGAAGTTGTGTGCGTTTCTTTCGTGCATTACTTCCATACCAAGGTTG 119708 Query 36033 GCACGGTTAAGAATGTCAGCCCAAGTTGGGACGACTCTTCCGTTGGAATCAACGACTGAC 36092 |||||||| | |||||| ||||||| || || | || | || || || |||||| Sbjct 119709 GCACGGTTGATGATGTCACCCCAAGTGTTGATAACGCGACCTTGAGAGTCTACAACTGAC 119768 Query 36093 TGATTGAAGTTAAAGCCGTTGAGATTAAAAGCCATAGTGGAGACTCCCATAGCGGTAAGC 36152 || |||||||| || ||||| || || || |||||||| |||| || | ||| |||| | Sbjct 119769 TGGTTGAAGTTGAATCCGTTAAGGTTGAATGCCATAGTAGAGATACCAAGAGCAGTAAAC 119828 Query 36153 CATATGCAAGTGACGGGCCAAGCAGCCAGGAAGAAATGTAAACTG--CGGCTATTATTAA 36210 || || | | || ||||||||||| |||||||| || || || || || || | Sbjct 119829 CAGATACCAACTACAGGCCAAGCAGCAAGGAAGAAGTG--AAGTGAACGAGAGTTGTTGA 119886 Query 36211 AGCTAGCATACTGGAAGATGAGTCTCCCAAAGTAGCCATGAGCCGCAACAATGTTATACG 36270 | ||| || |||||||| || | |||||||| || || || ||||||||||| || | Sbjct 119887 ATGAAGCGTATTGGAAGATTAGACGACCAAAGTAACCGTGTGCAGCAACAATGTTGTAAG 119946 Query 36271 TCTCTTCTTCTTGGCCGAATTTATATCCATAGTTCTGAGATTCAAGCCCAGTTGTTTCAC 36330 | ||||||||||| |||||||| || ||| ||| ||||| | |||| ||||||| Sbjct 119947 TTTCTTCTTCTTGACCGAATTTGTAACCAGCGTTTGCTGATTCGTTCTCAGTAGTTTCAC 120006 Query 36331 GAATAAGTGAGGAAGTAACAAGACTTCCGTGCATAGCAGCGAATAAAGCTCCACCGAATA 36390 | |||||||| ||||| || ||| ||||||||||| | ||| | | |||||||| | Sbjct 120007 GGATAAGTGAAGAAGTTACTAGAGAACCGTGCATAGCTGAGAAAAGTGAACCACCGAACA 120066 Query 36391 CCCCTGCAACACCGAGCATATGGAACGGATGCATAAGGATATTGTGTTCTGCCTGAAAGA 36450 | || |||||||| ||||| ||||| || ||||||||||| ||||| || || || || | Sbjct 120067 CACCAGCAACACCAAGCATGTGGAATGGGTGCATAAGGATGTTGTGCTCAGCTTGGAAAA 120126 Query 36451 CAAACATAAAATTGAAAGTCCCTGAAATACCAAGAGGCATACCATCAGAGAAACTCCCTT 36510 ||| ||| || |||||||| ||||||||||| | |||||||||||| ||||| |||| Sbjct 120127 CAATCATGAAGTTGAAAGTTCCTGAAATACCCAAAGGCATACCATCTGAGAATGAACCTT 120186 Query 36511 GTCCAAAAGGGTAGACTAAGAATACAGCAAATGCTGCTGCAACAGGGGCTGAATAAGCTA 36570 | || | |||||||| | |||||||||| || |||||||| || || || ||||||| Sbjct 120187 GACCGATAGGGTAGATGATGAATACAGCAGTAGCAGCTGCAACTGGTGCAGAGTAAGCTA 120246 Query 36571 CACATATCCACGGCCTCATACCTAGTCTATAACTAAGTTCCCATTGTCGTCCCAAGTAAG 36630 || ||||| || | ||| |||| | || ||||||||| | || |||| || || Sbjct 120247 CAGCGATCCATGGACGCATTCCTAAACGGAAAGAAAGTTCCCACTCACGACCCATGT-AG 120305 Query 36631 CTG-AGATACCAATGAGAAAGTGGAACACAATGAGTTGATATGGTCCTCCGTTATATAAC 36689 | | | || || | || ||||| | || || ||||| || || || ||||| || | | Sbjct 120306 CAGCAAATGCCTAGGAAGAAGTGACATACGATTAGTTGGTAAGGACCACCGTTGTAAAGC 120365 Query 36690 CACTCGTCGAGGGTTGCAGCTTCCCAGATTGGGTAGAAGTGAAGACCGATTGCGTTCGAT 36749 || ||||| || | ||||||||||| |||||||||||||| ||||| |||||||| ||| Sbjct 120366 CATTCGTCAAGTGAAGCAGCTTCCCAAATTGGGTAGAAGTGCAGACCAATTGCGTTTGAT 120425 Query 36750 GATGGGACGATTGCCCCAGAGATGATGTTGTTTCCATAGAGTAATGCTCCTGAGACAGGC 36809 | || || | || ||||| ||||||||||| || || |||| | ||||| |||||| Sbjct 120426 GTAGGAACAACAGCACCAGAAATGATGTTGTTACCGTAAAGTAGAGAACCTGATACAGGC 120485 Query 36810 TCACGAATACCATCTATATCCACGGGAGGCGCAGCAACAAATGCAATTAAAAATGCTGTC 36869 ||||| |||||||| || || || ||||| |||||||||||||| || | || | | Sbjct 120486 TCACGGATACCATCGATGTCTACAGGAGGTGCAGCAACAAATGCGATAATGAACACAGAA 120545 Query 36870 ACTGCTGTTAAAAGTGCAGGGATCATTAGTACCCCAAACCACCCCACATAGAGGCGGTTG 36929 ||| |||||||| | |||||||||||| || |||||||| || | || |||||||| Sbjct 120546 GTTGCAGTTAAAAGAGTAGGGATCATTAGAACACCAAACCAACCAATGTAAAGGCGGTTT 120605 Query 36930 TTTGTACTTGTAACCCAGTCACATAA 36955 | || || |||||||| ||||| || Sbjct 120606 TCAGTGCTAGTAACCCATTCACAGAA 120631 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 150454210615524