Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Coccomyxa_20sp._20LA000219_20[genbank_20GCA_5F000812005.1_202015-01- 02] 106 sequences; 48,546,496 total letters Query= NC_016658.1 Length=47741 Score E Sequences producing significant alignments: (Bits) Value seq18 673 0.0 >seq18 Length=145863 Score = 673 bits (746), Expect = 0.0 Identities = 746/987 (76%), Gaps = 8/987 (1%) Strand=Plus/Plus Query 5195 GCTAGATCAAGTGGGAAGTTGTGAGCATTTCGTTCGTGCATTACTTCCATACCAAGGTTG 5254 || || || |||||||||||||| || |||| |||||||||||||||||||||||||||| Sbjct 119649 GCAAGGTCTAGTGGGAAGTTGTGTGCGTTTCTTTCGTGCATTACTTCCATACCAAGGTTG 119708 Query 5255 GCACGGTTCAGGACATCTGCCCAAGTGGGAACGATTCTACCGCTAGAGTCAACGACTGAC 5314 |||||||| | || || |||||||| | | | ||| |||||| || |||||| Sbjct 119709 GCACGGTTGATGATGTCACCCCAAGTGTTGATAACGCGACCTTGAGAGTCTACAACTGAC 119768 Query 5315 TGATTGAAGTTAAAGCCGTTAAGATTAAAAGCCATAGTGGAGATTCCCATAGAGGTAAGC 5374 || |||||||| || |||||||| || || |||||||| ||||| || | || |||| | Sbjct 119769 TGGTTGAAGTTGAATCCGTTAAGGTTGAATGCCATAGTAGAGATACCAAGAGCAGTAAAC 119828 Query 5375 CATATGCAAACGACGGGCCAAGTAGCCAGGAAGAAATGTAAACTACGGCTATTGTTAAAG 5434 || || | ||| || ||||||| ||| |||||||| || | ||| ||||| || Sbjct 119829 CAGATACCAACTACAGGCCAAGCAGCAAGGAAGAAGTGAAGTGAACGAGAGTTGTTGAAT 119888 Query 5435 CTAGCATACTGGAAGATGAGTCTCCCAAAGTAGCCATGAGCCGCAACAATGTTATACGTT 5494 ||| || |||||||| || | |||||||| || || || ||||||||||| || ||| Sbjct 119889 GAAGCGTATTGGAAGATTAGACGACCAAAGTAACCGTGTGCAGCAACAATGTTGTAAGTT 119948 Query 5495 TCTTCCTCTTGGCCGAATTTATATCCATAGTT--CTGAGAAGTAAGCCCAGTTGTTTCAC 5552 ||||| ||||| |||||||| || ||| ||| |||| || | |||| ||||||| Sbjct 119949 TCTTCTTCTTGACCGAATTTGTAACCAGCGTTTGCTGATTCGT--TCTCAGTAGTTTCAC 120006 Query 5553 GAATGAGCGAAGAAGTAACAAGACTTCCATGCATAGCAGCGAACAAAGCTCCACCGAATA 5612 | || || |||||||| || ||| || |||||||| | ||| | | |||||||| | Sbjct 120007 GGATAAGTGAAGAAGTTACTAGAGAACCGTGCATAGCTGAGAAAAGTGAACCACCGAACA 120066 Query 5613 CCCCAGCAACACCGAGCATGTGGAACGGATGCATAAGGATATTGTGTTCTGCCTGGAATA 5672 | ||||||||||| ||||||||||| || ||||||||||| ||||| || || ||||| | Sbjct 120067 CACCAGCAACACCAAGCATGTGGAATGGGTGCATAAGGATGTTGTGCTCAGCTTGGAAAA 120126 Query 5673 CGAACATAAAGTTAAAAGTACCAGAGATACCAAGAGGCATACCATCACTGAAACTTCCCT 5732 | | ||| ||||| ||||| || || ||||| | |||||||||||| ||| || | Sbjct 120127 CAATCATGAAGTTGAAAGTTCCTGAAATACCCAAAGGCATACCATCTGAGAATGAACCTT 120186 Query 5733 GTCCGAAAGGGTATACTAAAAATACTG-AGTAGGCTGCGGCAACCGGTGCTGAATATGCT 5791 | |||| |||||| | | ||||| | |||| || || ||||| ||||| || || ||| Sbjct 120187 GACCGATAGGGTAGATGATGAATACAGCAGTA-GCAGCTGCAACTGGTGCAGAGTAAGCT 120245 Query 5792 ACGCAAATCCATGGTCGCATTCCTAATCTGTAACTAAGTTCCCATTGGCGTCCCAAGTAA 5851 || |||||||| ||||||||||| | | || ||||||||| | || |||| || | Sbjct 120246 ACAGCGATCCATGGACGCATTCCTAAACGGAAAGAAAGTTCCCACTCACGACCCATGT-A 120304 Query 5852 GCTGC-GATACCAATAAGGAAGTGGAAGACGACGAGTTGGTATGGTCCTCCATTGTAAAG 5910 || || || || | | |||||| | |||| |||||||| || || || |||||||| Sbjct 120305 GCAGCAAATGCCTAGGAAGAAGTGACATACGATTAGTTGGTAAGGACCACCGTTGTAAAG 120364 Query 5911 CCATTCATCGAGATTGGCTGCTTCCCAGATGGGATAGAAGTGTAACCCAATTGCGTTGGA 5970 |||||| || || || |||||||| || || |||||||| | ||||||||||| || Sbjct 120365 CCATTCGTCAAGTGAAGCAGCTTCCCAAATTGGGTAGAAGTGCAGACCAATTGCGTTTGA 120424 Query 5971 GCTGGGTACAACGGCTCCTGATATGATGTTGTTTCCATAGAGTAGAGATCCTGCGACGGG 6030 | || ||||| || || || ||||||||||| || || |||||||| |||| || || Sbjct 120425 TGTAGGAACAACAGCACCAGAAATGATGTTGTTACCGTAAAGTAGAGAACCTGATACAGG 120484 Query 6031 TTCACGTATGCCGTCGATGTCGACTGGGGGTGCAGCTACGAATGCTAATATAAATGCAGT 6090 ||||| || || |||||||| || || |||||||| || ||||| | || || ||| Sbjct 120485 CTCACGGATACCATCGATGTCTACAGGAGGTGCAGCAACAAATGCGATAATGAACACAGA 120544 Query 6091 AGTTGCGGTTAAGAGTGCGGGTATCATTAAGACACCAAACCACCCCACATAGAGGCGGTT 6150 |||||| ||||| || | || ||||||| ||||||||||| || | || |||||||| Sbjct 120545 AGTTGCAGTTAAAAGAGTAGGGATCATTAGAACACCAAACCAACCAATGTAAAGGCGGTT 120604 Query 6151 GTTGGTGCTAGTAACCCAGTCACAGAA 6177 | |||||||||||||| |||||||| Sbjct 120605 TTCAGTGCTAGTAACCCATTCACAGAA 120631 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 152649407852316