Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Coccomyxa_20sp._20LA000219_20[genbank_20GCA_5F000812005.1_202015-01- 02] 106 sequences; 48,546,496 total letters Query= NC_016659.1 Length=47536 Score E Sequences producing significant alignments: (Bits) Value seq18 664 0.0 >seq18 Length=145863 Score = 664 bits (736), Expect = 0.0 Identities = 741/987 (75%), Gaps = 2/987 (0%) Strand=Plus/Plus Query 25450 GATGCTAAGTCAAGAGGGAAGTTGTGTGCGTTACGCTCATGCATAACTTCCATGCCTAAG 25509 || || | ||| || ||||||||||||||||| | || ||||| |||||||| || | | Sbjct 119646 GAAGCAAGGTCTAGTGGGAAGTTGTGTGCGTTTCTTTCGTGCATTACTTCCATACCAAGG 119705 Query 25510 TCGGCACGGTTAAGAATGTCAGCCCAAGTTGGGACGACTCTTCCGTTGGAATCAACGACT 25569 | ||||||||| | |||||| ||||||| || || | || | || || || ||| Sbjct 119706 TTGGCACGGTTGATGATGTCACCCCAAGTGTTGATAACGCGACCTTGAGAGTCTACAACT 119765 Query 25570 GACTGATTGAAGTTAAAGCCGTTGAGATTAAAAGCCATAGTGGAGACTCCCATAGCGGTA 25629 ||||| |||||||| || ||||| || || || |||||||| |||| || | ||| ||| Sbjct 119766 GACTGGTTGAAGTTGAATCCGTTAAGGTTGAATGCCATAGTAGAGATACCAAGAGCAGTA 119825 Query 25630 AGCCATATGCAAGTGACGGGCCAAGCAGCCAGGAAGAAATGTAAACTACGGCTATTATTA 25689 | ||| || | | || ||||||||||| |||||||| || | ||| || || Sbjct 119826 AACCAGATACCAACTACAGGCCAAGCAGCAAGGAAGAAGTGAAGTGAACGAGAGTTGTTG 119885 Query 25690 AAGCTAGCATACTGGAAGATGAGTCTCCCAAAGTAGCCATGAGCCGCAACAATGTTATAC 25749 || ||| || |||||||| || | |||||||| || || || ||||||||||| || Sbjct 119886 AATGAAGCGTATTGGAAGATTAGACGACCAAAGTAACCGTGTGCAGCAACAATGTTGTAA 119945 Query 25750 GTCTCTTCTTCTTGGCCGAATTTATATCCATAGTTCTGAGATTCAAGCCCAGTTGTTTCA 25809 || ||||||||||| |||||||| || ||| ||| ||||| | |||| |||||| Sbjct 119946 GTTTCTTCTTCTTGACCGAATTTGTAACCAGCGTTTGCTGATTCGTTCTCAGTAGTTTCA 120005 Query 25810 CGAATAAGTGAGGAAGTAACAAGACTTCCGTGCATAGCAGCGAATAAAGCTCCACCGAAT 25869 || |||||||| ||||| || ||| ||||||||||| | ||| | | |||||||| Sbjct 120006 CGGATAAGTGAAGAAGTTACTAGAGAACCGTGCATAGCTGAGAAAAGTGAACCACCGAAC 120065 Query 25870 ACCCCTGCAACACCGAGCATATGGAACGGATGCATAAGGATATTGTGTTCTGCCTGAAAG 25929 || || |||||||| ||||| ||||| || ||||||||||| ||||| || || || || Sbjct 120066 ACACCAGCAACACCAAGCATGTGGAATGGGTGCATAAGGATGTTGTGCTCAGCTTGGAAA 120125 Query 25930 ACAAACATAAAATTGAAAGTCCCTGAAATACCAAGAGGCATACCATCAGAGAAACTCCCT 25989 |||| ||| || |||||||| ||||||||||| | |||||||||||| ||||| ||| Sbjct 120126 ACAATCATGAAGTTGAAAGTTCCTGAAATACCCAAAGGCATACCATCTGAGAATGAACCT 120185 Query 25990 TGTCCAAAAGGGTAGACTAAGAATACAGCAAATGCTGCTGCAACAGGGGCTGAATAAGCT 26049 || || | |||||||| | |||||||||| || |||||||| || || || |||||| Sbjct 120186 TGACCGATAGGGTAGATGATGAATACAGCAGTAGCAGCTGCAACTGGTGCAGAGTAAGCT 120245 Query 26050 ACACATATCCACGGCCTCATGCCTAGTCTATAACTAAGTTCCCATTGTCGTCCCAAGTAA 26109 ||| ||||| || | ||| |||| | || ||||||||| | || |||| || | Sbjct 120246 ACAGCGATCCATGGACGCATTCCTAAACGGAAAGAAAGTTCCCACTCACGACCCATGT-A 120304 Query 26110 GCTG-AGATGCCGATGAGAAAGTGGAACACAATAAGTTGATATGGTCCACCGTTATACAA 26168 || | | ||||| | || ||||| | || || ||||| || || |||||||| || | Sbjct 120305 GCAGCAAATGCCTAGGAAGAAGTGACATACGATTAGTTGGTAAGGACCACCGTTGTAAAG 120364 Query 26169 CCACTCGTCGAGGGTTGCAGCTTCCCAGATTGGGTAGAAGTGAAGACCGATTGCGTTAGA 26228 ||| ||||| || | ||||||||||| |||||||||||||| ||||| |||||||| || Sbjct 120365 CCATTCGTCAAGTGAAGCAGCTTCCCAAATTGGGTAGAAGTGCAGACCAATTGCGTTTGA 120424 Query 26229 TGACGGGACGATTGCCCCTGAGATGATGTTGTTTCCATAGAGTAATGCTCCTGAGACAGG 26288 || || || | || || || ||||||||||| || || |||| | ||||| ||||| Sbjct 120425 TGTAGGAACAACAGCACCAGAAATGATGTTGTTACCGTAAAGTAGAGAACCTGATACAGG 120484 Query 26289 CTCACGAATACCATCTATATCCACGGGAGGCGCAGCAACAAATGCAATTAAAAATGCTGT 26348 |||||| |||||||| || || || ||||| |||||||||||||| || | || | | Sbjct 120485 CTCACGGATACCATCGATGTCTACAGGAGGTGCAGCAACAAATGCGATAATGAACACAGA 120544 Query 26349 CACTGCTGTTAAAAGTGCAGGGATCATTAGTACCCCAAACCACCCCACATAGAGGCGGTT 26408 ||| |||||||| | |||||||||||| || |||||||| || | || |||||||| Sbjct 120545 AGTTGCAGTTAAAAGAGTAGGGATCATTAGAACACCAAACCAACCAATGTAAAGGCGGTT 120604 Query 26409 GTTTGTACTTGTAACCCAGTCACATAA 26435 | || || |||||||| ||||| || Sbjct 120605 TTCAGTGCTAGTAACCCATTCACAGAA 120631 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 151993408678056