Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Coccomyxa_20sp._20LA000219_20[genbank_20GCA_5F000812005.1_202015-01- 02] 106 sequences; 48,546,496 total letters Query= NC_019443.1 Length=172879 Score E Sequences producing significant alignments: (Bits) Value seq18 765 0.0 >seq18 Length=145863 Score = 765 bits (848), Expect = 0.0 Identities = 752/965 (78%), Gaps = 8/965 (1%) Strand=Plus/Minus Query 162522 TGACAATCGCATCTATGTCGGTTGGTTCGGTGTCTTGATGATCCCTTGCTTGCTCGCAGC 162581 ||| || ||| | || | |||||||| ||||| | ||||||||| || || | | Sbjct 120608 TGAAAACCGCCTTTACATTGGTTGGTTTGGTGTTCTAATGATCCCTA-CT--CTTTTAAC 120552 Query 162582 AGCAACTTGC---TTCATCATTGCATTCATTGCAGCACCTCCAGTTGATATCGATGGTAT 162638 ||||||| ||||| || ||||| |||| |||||||| || || ||||||||||| Sbjct 120551 TGCAACTTCTGTGTTCATTATCGCATTTGTTGCTGCACCTCCTGTAGACATCGATGGTAT 120492 Query 162639 CAGAGAACCTGTTGCAGGTTCACTTCTCTATGGTAACAACATCATCTCTGGTGCTGTCGT 162698 | | || ||||| ||||||| || || || |||||||||||||| ||||||||||| || Sbjct 120491 CCGTGAGCCTGTATCAGGTTCTCTACTTTACGGTAACAACATCATTTCTGGTGCTGTTGT 120432 Query 162699 TCCTAGTTCAAATGCTATTGGTCTTCACTTCTATCCTATCTGGGAAGCAGCAACTCTTGA 162758 ||||| ||||| || |||||||| |||||||| || || |||||||| || | ||||| Sbjct 120431 TCCTACATCAAACGCAATTGGTCTGCACTTCTACCCAATTTGGGAAGCTGCTTCACTTGA 120372 Query 162759 TGAGTGGTTGTATAATGGTGGACCTTTCCAACTTGTAGTCTTCCACTTCCTTATCGGAAT 162818 || ||| | || || ||||| |||| |||||| | || | |||||| | | || || Sbjct 120371 CGAATGGCTTTACAACGGTGGTCCTTACCAACTAATCGTATGTCACTTCTTCCTAGGCAT 120312 Query 162819 CA-CAGCATACTGTGGTCGTCAGTGGGAACTTTCTTACCGCTTAGGTATGCGTCCTTGGA 162877 | || ||| |||||| ||||||||||||||| ||| ||||| |||||||| |||| Sbjct 120311 TTGCTGC-TACATGGGTCGTGAGTGGGAACTTTCTTTCCGTTTAGGAATGCGTCCATGGA 120253 Query 162878 TCTGTGTTGCATACTCTGCACCAGTATCTGCAGCATTCGCTGTGTTCTTGGTCTATCCTT 162937 || ||| || |||||||||||||| | || || ||||| ||| | |||| ||| Sbjct 120252 TCGCTGTAGCTTACTCTGCACCAGTTGCAGCTGCTACTGCTGTATTCATCATCTACCCTA 120193 Query 162938 TCGGTCAAGGTTCTTTCTCTGACGCAATGCCTCTTGGTATTTCTGGTACTTTTAACTACA 162997 ||||||||||||| ||||| || | |||||| | |||||||| || ||||| |||| || Sbjct 120192 TCGGTCAAGGTTCATTCTCAGATGGTATGCCTTTGGGTATTTCAGGAACTTTCAACTTCA 120133 Query 162998 TGTTCGTGTTCCAAGCAGAGCACAACATCCTAATGCACCCCTTCCATATGATTGGAGTCG 163057 || | || |||||||| |||||||||||||| |||||||| ||||| ||| |||| || | Sbjct 120132 TGATTGTTTTCCAAGCTGAGCACAACATCCTTATGCACCCATTCCACATGCTTGGTGTTG 120073 Query 163058 CAGGTGTATTCGGTGGTTCACTCTTTAGTGCTATGCACGGTTCTCTTGTTACTTCTTCTC 163117 | ||||| |||||||||||||| || ||||||||||||||||| || |||||||| | Sbjct 120072 CTGGTGTGTTCGGTGGTTCACTTTTCTCAGCTATGCACGGTTCTCTAGTAACTTCTTCAC 120013 Query 163118 TTATCAGAGAAACTACTGAGCAAGAGTCACAGAACTACGGTTATAAGTTCGGACAAGAAG 163177 ||||| | |||||||||||| | || ||| ||| ||||| || ||||| ||||||| Sbjct 120012 TTATCCGTGAAACTACTGAGAACGAATCAGCAAACGCTGGTTACAAATTCGGTCAAGAAG 119953 Query 163178 AAGAGACTTACAACATTGTTGCTGCTCATGGATACTTTGGTCGCTTGATCTTCCAGTATG 163237 |||| |||||||||||||||||||| || || ||||||||||| | |||||||| || | Sbjct 119952 AAGAAACTTACAACATTGTTGCTGCACACGGTTACTTTGGTCGTCTAATCTTCCAATACG 119893 Query 163238 CATCTTTCAACAACTCACGTTCACTTCACTTCTTCCTTGCTGCATTCCCTGTGGTCTGCA 163297 | || ||||||||||| |||||||||||||||||||||||||| | ||||| || | | Sbjct 119892 CTTCATTCAACAACTCTCGTTCACTTCACTTCTTCCTTGCTGCTTGGCCTGTAGTTGGTA 119833 Query 163298 TCTGGTTCACTGCAATGGGTGTGTCAACTATGGCATTCAACCTTAACGGTTTCAACTTCA 163357 ||||||| ||||| | ||| | || ||||||||||||||||||||||| |||||||||| Sbjct 119832 TCTGGTTTACTGCTCTTGGTATCTCTACTATGGCATTCAACCTTAACGGATTCAACTTCA 119773 Query 163358 ACCAATCCGTCGTTGACGCAGGTGGTAAAGTGATTCCTACTTGGGCAGATATCCTTAACA 163417 |||| || || || ||| | ||| || || ||||||| || ||| | ||| Sbjct 119772 ACCAGTCAGTTGTAGACTCTCAAGGTCGCGTTATCAACACTTGGGGTGACATCATCAACC 119713 Query 163418 GAGCAGGACTTGGTATGGAAGTTATGCACGAGCGTAATGCTCACAACTTCCCACTTGACC 163477 | || |||||||||||||| |||||||| | || || |||||||||||||| |||| Sbjct 119712 GTGCCAACCTTGGTATGGAAGTAATGCACGAAAGAAACGCACACAACTTCCCACTAGACC 119653 Query 163478 TTGCT 163482 ||||| Sbjct 119652 TTGCT 119648 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 553084067162640