Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Coccomyxa_20sp._20LA000219_20[genbank_20GCA_5F000812005.1_202015-01- 02] 106 sequences; 48,546,496 total letters Query= NC_019444.1 Length=176043 Score E Sequences producing significant alignments: (Bits) Value seq18 782 0.0 seq17 480 9e-131 >seq18 Length=145863 Score = 782 bits (866), Expect = 0.0 Identities = 768/986 (78%), Gaps = 4/986 (0%) Strand=Plus/Minus Query 162892 TTCTGCGAGTGGGTAACTTCTACCAATAACCGCCTCTATGTCGGTTGGTTCGGCGTACTG 162951 ||||| || ||||| ||| || | |||||||| || | |||||||| || || || Sbjct 120631 TTCTGTGAATGGGTTACTAGCACTGAAAACCGCCTTTACATTGGTTGGTTTGGTGTTCTA 120572 Query 162952 ATGATTCCAACTCTGTTGGCAGCAACTATCTGT-TTCATCGTCGCCTTCGTCGCTGCTCC 163010 ||||| || ||||| || | |||||| ||||| ||||| |||| || || ||||| || Sbjct 120571 ATGATCCCTACTCTTTTAACTGCAACT-TCTGTGTTCATTATCGCATTTGTTGCTGCACC 120513 Query 163011 CCCTGTGGACATTGACGGCATCCGTGAGCCCGTCGCTGGTTCACTCATGTATGGCAACAA 163070 ||||| ||||| || || ||||||||||| || | ||||| || | || || ||||| Sbjct 120512 TCCTGTAGACATCGATGGTATCCGTGAGCCTGTATCAGGTTCTCTACTTTACGGTAACAA 120453 Query 163071 CATCATCTCTGGTGCAGTTGTTCCATCTTCCAACGCAATTGGTCTTCACTTCTATCCCAT 163130 |||||| |||||||| |||||||| | || |||||||||||||| |||||||| || || Sbjct 120452 CATCATTTCTGGTGCTGTTGTTCCTACATCAAACGCAATTGGTCTGCACTTCTACCCAAT 120393 Query 163131 CTGGGAAGCCGCATCACTTGATGAGTGGCTGTATAACGGTGGTCCTTTCCAACTCGTAGT 163190 |||||||| || |||||||| || ||||| || ||||||||||||| |||||| | || Sbjct 120392 TTGGGAAGCTGCTTCACTTGACGAATGGCTTTACAACGGTGGTCCTTACCAACTAATCGT 120333 Query 163191 CTTTCACTTCCTTATCGGCATCTA-TGCATATATGGGACGTGAATGGGAACTTTCATATC 163249 | ||||||| | | ||||| | ||| || ||||| ||||| ||||||||||| | | Sbjct 120332 ATGTCACTTCTTCCTAGGCATTTGCTGC-TACATGGGTCGTGAGTGGGAACTTTCTTTCC 120274 Query 163250 GCTTAGGTATGCGCCCCTGGATCTGTGTAGCATACTCTGCACCTGTTGCAGCAGCATCCG 163309 | ||||| ||||| || |||||| |||||| ||||||||||| |||||||| || | | Sbjct 120273 GTTTAGGAATGCGTCCATGGATCGCTGTAGCTTACTCTGCACCAGTTGCAGCTGCTACTG 120214 Query 163310 CAGTCTTCCTGGTCTATCCTTTCGGTCAAGGTTCTTTCTCTGACGCAATGCCACTTGGCA 163369 | || ||| | |||| ||| ||||||||||||| ||||| || | ||||| | || | Sbjct 120213 CTGTATTCATCATCTACCCTATCGGTCAAGGTTCATTCTCAGATGGTATGCCTTTGGGTA 120154 Query 163370 TCTCTGGCACATTCAACTACATGCTTGTCTTCCAAGCAGAGCACAACATCCTGATGCACC 163429 | || || || ||||||| |||| |||| |||||||| |||||||||||||| ||||||| Sbjct 120153 TTTCAGGAACTTTCAACTTCATGATTGTTTTCCAAGCTGAGCACAACATCCTTATGCACC 120094 Query 163430 CCTTCCATATGTTGGGAGTCGCTGGTGTCTTCGGTGGATCACTCTTCTCGGCAATGCATG 163489 | ||||| ||| | || || |||||||| |||||||| ||||| ||||| || ||||| | Sbjct 120093 CATTCCACATGCTTGGTGTTGCTGGTGTGTTCGGTGGTTCACTTTTCTCAGCTATGCACG 120034 Query 163490 GCAGTCTTGTTACCTCTTCACTCGTCCGTGAGACGACTGAAACTGAGTCACAAAACTATG 163549 | ||| || || |||||||| ||||||| || ||||| | || ||| |||| || Sbjct 120033 GTTCTCTAGTAACTTCTTCACTTATCCGTGAAACTACTGAGAACGAATCAGCAAACGCTG 119974 Query 163550 GTTACAAGTTTGGTCAAGAAGAAGAGACATACAACATCGTTGCAGCACATGGCTACTTCG 163609 ||||||| || |||||||||||||| || |||||||| ||||| ||||| || ||||| | Sbjct 119973 GTTACAAATTCGGTCAAGAAGAAGAAACTTACAACATTGTTGCTGCACACGGTTACTTTG 119914 Query 163610 GTCGTTTGATCTTCCAATATGCATCATTCAACAACAGCAGAAGTCTTCACTTCTTCCTGG 163669 ||||| | ||||||||||| || |||||||||||| | |||||||||||||| | Sbjct 119913 GTCGTCTAATCTTCCAATACGCTTCATTCAACAACTCTCGTTCACTTCACTTCTTCCTTG 119854 Query 163670 CAGCATGGCCTGTCGTCGGAATCTGGTTTACTGCACTGGGCGTAAGCACCATGGCATTCA 163729 | || |||||||| || || |||||||||||||| || || | || |||||||||| Sbjct 119853 CTGCTTGGCCTGTAGTTGGTATCTGGTTTACTGCTCTTGGTATCTCTACTATGGCATTCA 119794 Query 163730 ACCTCAACGGTTTCAACTTCAACCAGTCCATCCTTGATGGTCAGGGTCGTGTGCTCAACA 163789 |||| ||||| ||||||||||||||||| | | || ||| ||||| || |||||| Sbjct 119793 ACCTTAACGGATTCAACTTCAACCAGTCAGTTGTAGACTCTCAAGGTCGCGTTATCAACA 119734 Query 163790 CTTGGGCAGACGTGCTTAACCGCGCTGGTCTGGGTATGGAAGTTATGCATGAGCGTAACG 163849 |||||| ||| | | ||||| || || ||||||||||| ||||| || | |||| Sbjct 119733 CTTGGGGTGACATCATCAACCGTGCCAACCTTGGTATGGAAGTAATGCACGAAAGAAACG 119674 Query 163850 CACACAACTTCCCACTCGATCTTGCT 163875 |||||||||||||||| || |||||| Sbjct 119673 CACACAACTTCCCACTAGACCTTGCT 119648 >seq17 Length=88650 Score = 480 bits (532), Expect = 9e-131 Identities = 723/1017 (71%), Gaps = 18/1017 (2%) Strand=Plus/Minus Query 164617 TAGATGACTGGCTTAAACGAGATCGCTTTGTTTTTGTGGGGTGGTCTGGATTACTACTTC 164676 ||||||||||| | || || || ||||| || || || |||||||| | |||| | Sbjct 87617 TAGATGACTGGTTGCGCCGTGAACGATTTGTGTTCGTTGGCTGGTCTGGTCTGTTACT-C 87559 Query 164677 TTCCC-ACTGCTTATCTGGCCATTGGCGGTTGGCTTACTGGCACAGCTTTTGTCACGAGT 164735 ||||| || ||||| || || | || || ||| | || || || | || || || | Sbjct 87558 TTCCCTACAGCTTACCTTGCATTAGGTGGCTGGTTGACAGGAACCACATTCGTTACATCT 87499 Query 164736 TGGTACACCCATGGTCTTGCTTCTTCCTATCTTGAAGG-TGCTAACTTTCTCACAGCAGC 164794 |||||||| ||||| ||||| ||| || | ||||| ||| ||||| | |||||||| Sbjct 87498 TGGTACACACATGGACTTGCAAGTTCTTACTTAGAAGGATGC-AACTTCTTAACAGCAGC 87440 Query 164795 TGTCTCGACGCCTGCTGATGCTATGGGTCATTC--TCTTCTTCTACTTTGGGGTCCTGAG 164852 || || || || || | |||||||| || | || ||| || ||||| |||||| Sbjct 87439 CGTTTCAACTCCAGCAAACAGCATGGGTCACTCATTGTTGTTC--CTATGGGGGCCTGAG 87382 Query 164853 TCTCAGGG-GAATTTCCAGCGGTGGTGCCAACTTGGGGGACTATGGAATTTCGTGGCTCT 164911 | || || || ||| | || ||||| || | || || || ||| |||||| ||| | Sbjct 87381 GCACAAGGTGACTTTACT-CGCTGGTGTCAGTTGGGTGGTCTGTGGGCTTTCGTAGCTTT 87323 Query 164912 CCACGGTGCCTTCGCCCTAATTGGTTTCATGCTCCGCCAGTTTGAGCTGGCACGTCTCAT 164971 || |||||||| || || ||||| || ||||| || |||||||| || ||| | || Sbjct 87322 ACATGGTGCCTTTGCGCTTATTGGGTTTATGCTACGACAGTTTGAACTTGCAAG----AT 87267 Query 164972 TGGTA----TCCGTCCTTACAATGCTATTGCGTTCTCTGGTCCTATTGCTGTTTTTGTCA 165027 |||| | ||||||||||| |||||||| ||||| | ||||||||||| || || Sbjct 87266 CGGTAAAGCTTCGTCCTTACAACGCTATTGCCTTCTCAGCACCTATTGCTGTCTTCGTAT 87207 Query 165028 GCGTCTTCCTTATCTACCCACTGGGTCAGTCCAGTTGGTTTTTCGCTCCGTCCTTTGGGG 165087 |||||||||||||| || |||| || || | ||||| || || || |||||| | Sbjct 87206 CAGTCTTCCTTATCTATCCTTTGGGACAATCAGGCTGGTTCTTTGCGCCTAGCTTTGGTG 87147 Query 165088 TGGCAGCAATCTTTAGATTCCTGTTGTTCCTTCAAGGATTCCACAACTGGACCCTCAACC 165147 | || |||||||| |||| | | ||| | ||||| |||||||||||||| || |||| Sbjct 87146 TAGCGGCAATCTTCCGATTTATTCTTTTCTTCCAAGGTTTCCACAACTGGACGCTTAACC 87087 Query 165148 CCTTCCATATGATGGGTGTTGCAGGTATCTTGGGAGGAGCATTGCTATCTGCTATTCATG 165207 | ||||| ||||||||||| |||||| | | || | ||| | |||| ||| ||||| | Sbjct 87086 CTTTCCACATGATGGGTGTGGCAGGTGTTCTAGGTGCTGCACTTCTATGTGCAATTCACG 87027 Query 165208 GAGTCACAGTTGAAAATACATTATACGAGGATGGAGAGCAGGCAAATACCTTTAAGGCGT 165267 ||| ||||| || || || | | || ||||| || || || || || || | Sbjct 87026 GAGCAACAGTAGAGAACACTCTTTTTGAAGATGGTGACGGTGCGAACACTTTCCGTGCAT 86967 Query 165268 TTGATTCGACACAGGAAGAAGAGACTTATTCTATGGTCACTGCAAACCGCTTCTGGTCGC 165327 | | | || || | |||||||| || |||||||| || || ||||| || ||||| | Sbjct 86966 TCAACCCAACGCAAGCCGAAGAGACATACTCTATGGTAACAGCTAACCGTTTTTGGTCAC 86907 Query 165328 AGATCTTCGGCATTGCGTTTTCTAACAAGCGGTGGCTTCATTTTTTCATGTTGTTTGTGC 165387 | ||||| || | || || || ||||| || ||||||||||| || ||| | ||||| | Sbjct 86906 AAATCTTTGGTGTAGCTTTCTCAAACAAACGTTGGCTTCATTTCTTTATGCTTTTTGTCC 86847 Query 165388 CTGTTATGGGTCTTTGGACATCCTCTATTGGCATTATTGGTCTTGCTCTCAACCTTCGTG 165447 |||| | |||||||||| | ||||| |||| || |||||||| ||| | || | Sbjct 86846 CTGTAACTGGTCTTTGGATGAGTGCAATTGGTGTTATCGGACTTGCTCTTAACTTACGAG 86787 Query 165448 CTTACGATTTCGTGAGTCAGGAGATCAGAGCAGCAGAAGATCCAGAATTTGAGACCTTCT 165507 | || || || || || |||||| | ||||| || || || ||||| ||||| |||| Sbjct 86786 CATATGACTTTGTTTCACAAGAGATCCGTGCAGCTGAGGACCCTGAATTCGAGACTTTCT 86727 Query 165508 ACACCAAAAACATCCTATTGAATGAAGGACTACGTGCTTGGTTGGCACCTGCTGATCAAC 165567 |||| |||||||| || | || ||||| | | || ||| |||| || || || | Sbjct 86726 ACACAAAAAACATTCTTCTAAACGAAGGTATTAGAGCATGGATGGCGGCTCAGGACCAGC 86667 Query 165568 CCCATGAAAACTTTATCTTCCCAGAAGAAGTATTGCCTAGAGGCAACGCCCTTTAAT 165624 | |||||||| || | |||||||| || || || || | || ||||| ||||||| Sbjct 86666 CACATGAAAAACTTGTATTCCCAGAGGAGGTTTTACCACGTGGAAACGCTCTTTAAT 86610 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 563208853747280