Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Coccomyxa_20sp._20LA000219_20[genbank_20GCA_5F000812005.1_202015-01- 02] 106 sequences; 48,546,496 total letters Query= NC_019491.1 Length=291144 Score E Sequences producing significant alignments: (Bits) Value seq57 187 5e-42 seq106 104 4e-17 seq2 104 4e-17 seq102 89.7 1e-12 >seq57 Length=1368 Score = 187 bits (206), Expect = 5e-42 Identities = 519/781 (66%), Gaps = 45/781 (6%) Strand=Plus/Plus Query 213191 GGCCAGCTCGCAGGACGCCTGCAGGGCAGCGTAGTAGATGGTTTCAAATATCTCCCTGTT 213250 ||||| |||||||| | || ||| ||||||| ||| ||||| || || || | || Sbjct 571 GGCCAATTCGCAGGAGGTCTCCAGAGCAGCGTGGTACATGGTCTCGGCGATGTCTCGATT 630 Query 213251 GAGCTTCTTGGCCTCTGGGGACGTGAAGGG---CATCATCATGCGTTGGAACACATCAGC 213307 |||| | | ||||| ||| | |||||| | ||| |||| |||| ||||| Sbjct 631 CAGCTGCCTCGCCTCAGGGCTCTCGAAGGGGTGCCTCAGGATGCA---GAACGTGTCAGC 687 Query 213308 CAGCCCCTGGACCCCGATGCCGATGGGTCTGTGTCTCAGGTTAGACTTGGAGCACT-CCT 213366 |||||||| ||||||||||| | |||| || | || || |||| || ||| Sbjct 688 AAGCCCCTGAACCCCGATGCCCACCGGTCGATGGCGTCTATTGGA----GAGCTCTGCCT 743 Query 213367 C---CAAGGGGTAAAAGTTGCAGTCGATGATCTTGTTGAGGTTGCGGGTGGCCACTTTGG 213423 | | || || | ||| |||||| | |||||| |||||||| ||||||| |||| Sbjct 744 CGGGCGTCGGATAGTAATTGATGTCGATCACCTTGTTCAGGTTGCGCATGGCCACCTTGG 803 Query 213424 TGACATGGGCCAGGTACTCGTGATTGAA-CACGTAGCCCCCGTCCTGCACAAACTCAGGC 213482 | || | | ||| |||| | ||| | | | || | | ||| || || ||| Sbjct 804 TCACGTTGTGCAGCCCCTCGAAGTCGAAGCTCCAATCCTCGGCCCTCGCGAATGTC-GGC 862 Query 213483 AGGGCGAT---GCTGGCCAGGTTGCAAACGGCCACCTCCTGAGAGTCT-GTGTACTCCAT 213538 |||||||| |||| |||||||| || ||| || ||| | | || | ||||| || Sbjct 863 AGGGCGATCGAGCTG---AGGTTGCACACCGCCGTCT-CTGCGGGGCTCGAGTACTGCAG 918 Query 213539 GATCTCGGTGCACAGGTTGCTGCATCGGATGGTGCCCAGGTTCTGGTGGTTTGACTTTGC 213598 ||||| ||||||| ||| || |||||||| |||| ||| ||||| ||||| Sbjct 919 AATCTCACTGCACAGATTGGAGCTGCGGATGGTCCCCAAGTTGCTCTGGTTGGACTTCCG 978 Query 213599 GTTGGCAGAATCCTTGTAGAGCATGTAGGGGGACCCGGTCTCTAGCTGGGACACCAGTAT 213658 |||| | ||||||| |||||| ||| || | ||||||||| | ||| || ||||| || Sbjct 979 GTTGCAGGCATCCTTGAAGAGCAGGTACGGTGTCCCGGTCTCGATCTGCGAGACCAGGAT 1038 Query 213659 CTGGCTCCAGAGGTACCTGGCCTTGACCACCCG--CCTGACAGCTCCGGGCGTAGCCTCG 213716 | | |||| || || || | |||| || || || || | || |||||| Sbjct 1039 CGCGTTCCACAGCGTCCGTGCGTCGACCTGGCGAACC---CACCTAC--TCGACGCCTCG 1093 Query 213717 TACTGTTCGTAGAGCTCGTTGAATTCGTGGCCCCAGACCCTGTC---CAGTCCCGGACAG 213773 || ||||| ||| ||||| || || ||| ||| ||| || || ||||| Sbjct 1094 TAACCCTCGTACAGCAGCTTGAAGTCCTGCCCC---ACCGCGTCAGGGAGCCCGGGACAC 1150 Query 213774 GATGCGGGACACATGAGGCTCC----AGTCCCCGTCATCTCTGACTCTCTGCATGAACAG 213829 | ||| ||| ||||||| |||||| | | | || | || |||||| || Sbjct 1151 GCGCTGGGGTCCATCAGGCTCCATTGAGTCCCTGACTGC----ACGCGCTCCATGAAGAG 1206 Query 213830 GTCCGGGACCCACAGCGCGGTGAACAGGTCCCTGGTCCTCCTCTCGTCCACTCCAGAGTT 213889 |||||| ||||||| ||| ||| || || | | || |||||| || | || || Sbjct 1207 GTCCGGTACCCACATGGCGTAGAAGAGATCGCGCGCCCGCCTCTCCTCGTCACCGTGATT 1266 Query 213890 TTTGCGCAGATCTAGAAAGTCAAAGATGTCCGCGTGCCACGGCTCCATGTAGATGGCAAA 213949 || || || || ||||| |||| ||| |||||||| ||||| |||||||| || || Sbjct 1267 CTTCTTGAGGTCCAGGAAGTCGAAGACGTCTGCGTGCCATGGCTCGATGTAGATTGCGAA 1326 Query 213950 G 213950 | Sbjct 1327 G 1327 >seq106 Length=3132237 Score = 104 bits (114), Expect = 4e-17 Identities = 184/262 (70%), Gaps = 10/262 (4%) Strand=Plus/Plus Query 48108 GCAGGTGCTTGGCATAGAGCATGCAGGCAAAGTCCCTGTGCAAGCCTTCGTCCCGGCTGA 48167 |||| || ||| || || | |||||| ||||| |||||| ||| ||||| || || Sbjct 1547868 GCAGCTGGTTG---TACAGGAGGCAGGCGAAGTCGGTGTGCAGGCCCTCGTCGCGCGAGA 1547924 Query 48168 TGAGCACGTTGGAGAAGCAGAGACCAGGCATGACCCCCCTCTGTTTGAGCCAGAAAATTG 48227 ||||| ||||||||||| ||| || ||||||| | | || ||||||||||| || | Sbjct 1547925 TGAGCTCGTTGGAGAAGGTGAGGCCGGGCATGAGCAGGCGCTTCTTGAGCCAGAAGATGG 1547984 Query 48228 CCGCGAAAGAGCCAGAGAAGAAGATGCCCTCCACTGCCGCGAACGCGGTGAGCCTCTCTC 48287 | ||| ||||| |||| |||||||||||| |||||||| || | ||| Sbjct 1547985 CGCAGAAGGAGCCGCTGAAGTGGATGCCCTCCACGCAGGCGAACGCCACCAG--GCGCTC 1548042 Query 48288 CGAAAGAAGCGTTCTTG-TCTG-AGATCCAGGAAAGCGCCCAGTCTGCCTTCTTCTTGAT 48345 || | |||| | || | ||| ||||||| ||||||| | |||||||| | Sbjct 1548043 CGCA--AAGC-TGCTGGCGCTGCCGATCCAGTGCTGCGCCCACTGCGCCTTCTTGGCCAC 1548099 Query 48346 GCATGGCATCGTCTCTATGGCC 48367 |||||||| ||||| ||||| Sbjct 1548100 GCATGGCAGCGTCTGGGTGGCC 1548121 >seq2 Length=534433 Score = 104 bits (114), Expect = 4e-17 Identities = 95/120 (79%), Gaps = 0/120 (0%) Strand=Plus/Minus Query 213527 TGTGTACTCCATGATCTCGGTGCACAGGTTGCTGCATCGGATGGTGCCCAGGTTCTGGTG 213586 ||||||||||| ||||| ||||| || |||||||| |||||||||||| ||||| || Sbjct 280765 TGTGTACTCCACAATCTCAGTGCAGAGATTGCTGCACTTGATGGTGCCCAGATTCTGCTG 280706 Query 213587 GTTTGACTTTGCGTTGGCAGAATCCTTGTAGAGCATGTAGGGGGACCCGGTCTCTAGCTG 213646 |||||||| |||| || ||||||||||||||||| ||| || ||||| | ||| Sbjct 280705 ATTTGACTTCCTGTTGCAGGAGTCCTTGTAGAGCATGTATGGGTTGCCTGTCTCAACCTG 280646 >seq102 Length=2901463 Score = 89.7 bits (98), Expect = 1e-12 Identities = 106/141 (75%), Gaps = 2/141 (1%) Strand=Plus/Minus Query 48122 TAGAGCATGCAGGCAAAGTCCCTGTGCAAGCCTTCGTCCCGGCTGATGAGCACGTTGGAG 48181 || || | |||||| ||||| | ||| | ||| ||||| ||| ||||||| |||||||| Sbjct 1633793 TACAGGAGGCAGGCGAAGTCGCAGTGGAGGCCCTCGTCGCGGGAGATGAGCTCGTTGGAG 1633734 Query 48182 AAGCAGAGACCAGGCATGACCCCCCTCTGTTTGAGCCAGAAAATTGCCGC-GAAAGAGCC 48240 ||| ||| || |||||| || | || ||||||||||| | || || ||| ||| Sbjct 1633733 AAGGTGAGGCCGTGCATGAGGCCGCGCTTCTTGAGCCAGAAGA-CGCTGCAGAAGCTGCC 1633675 Query 48241 AGAGAAGAAGATGCCCTCCAC 48261 |||||||||||||||||| Sbjct 1633674 GCTGAAGAAGATGCCCTCCAC 1633654 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 931531565719040