Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Coccomyxa_20sp._20LA000219_20[genbank_20GCA_5F000812005.1_202015-01- 02] 106 sequences; 48,546,496 total letters Query= NC_019495.1 Length=290304 Score E Sequences producing significant alignments: (Bits) Value seq106 123 5e-23 seq102 114 2e-20 >seq106 Length=3132237 Score = 123 bits (136), Expect = 5e-23 Identities = 163/220 (74%), Gaps = 7/220 (3%) Strand=Plus/Minus Query 25824 GAAGGCGCGGTGGGCCATGAAGTGGATCAACAGCCAGAGCGCTACGTTTGGCGAGCGGCT 25883 |||||||| |||||| | | |||||| |||| ||| | |||| ||||| || Sbjct 1548091 GAAGGCGCAGTGGGCGCAGCACTGGATCGGCAGCGCCAGC---AGCTTTGCGGAGCGCCT 1548035 Query 25884 GGTAGCCTTTGC-TGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTT-TGCGGCCATCTTC 25941 ||| || || || ||| |||||||||||| |||||||| || || |||| |||||||| Sbjct 1548034 GGTGGCGTTCGCCTGC-GTGGAGGGCATCCACTTCAGCGGCTCCTTCTGCG-CCATCTTC 1547977 Query 25942 TGGCTCAAGCAGAAGGGGACCATGCCCGGGCTGTACTTTTCCAACGAGCTCATCAGCAGG 26001 ||||||||| || | ||||||||| || ||| ||||||||||||||| | Sbjct 1547976 TGGCTCAAGAAGCGCCTGCTCATGCCCGGCCTCACCTTCTCCAACGAGCTCATCTCGCGC 1547917 Query 26002 GACGAGGGTCTCCACAGAGATTTTGCCTGCCTGCTCTACA 26041 |||||||| || |||| || || |||||||| || |||| Sbjct 1547916 GACGAGGGCCTGCACACCGACTTCGCCTGCCTCCTGTACA 1547877 >seq102 Length=2901463 Score = 114 bits (126), Expect = 2e-20 Identities = 134/176 (76%), Gaps = 4/176 (2%) Strand=Plus/Plus Query 25870 TTTGGCGAGCGGCTGGTAGCCTTTGC-TGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTT 25928 |||| ||||||||||| || | || ||| |||||||||||||| |||||||| || Sbjct 1633624 TTTGCGGAGCGGCTGGTGGCGTGGGCCTGC-GTGGAGGGCATCTTCTTCAGCGGCAGCTT 1633682 Query 25929 -TGCGGCCATCTTCTGGCTCAAGCAGAAGGGGACCATGCCCGGGCTGTACTTTTCCAACG 25987 ||| || |||||||||||||| || || ||||| ||| || ||| ||||||| Sbjct 1633683 CTGCAGCG-TCTTCTGGCTCAAGAAGCGCGGCCTCATGCACGGCCTCACCTTCTCCAACG 1633741 Query 25988 AGCTCATCAGCAGGGACGAGGGTCTCCACAGAGATTTTGCCTGCCTGCTCTACACG 26043 |||||||| | | |||||||| |||||| | || || |||||||| || ||| || Sbjct 1633742 AGCTCATCTCCCGCGACGAGGGCCTCCACTGCGACTTCGCCTGCCTCCTGTACTCG 1633797 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 928843569280640