Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Coccomyxa_20sp._20LA000219_20[genbank_20GCA_5F000812005.1_202015-01- 02] 106 sequences; 48,546,496 total letters Query= NC_019516.1 Length=161440 Score E Sequences producing significant alignments: (Bits) Value seq18 843 0.0 seq17 545 2e-150 >seq18 Length=145863 Score = 843 bits (934), Expect = 0.0 Identities = 779/985 (79%), Gaps = 4/985 (0%) Strand=Plus/Minus Query 8248 TTTTGCGAATGGGTCACTTCGACCAATAATCGCTTGTATGTCGGCTGGTTTGGCGTTCTC 8307 || || |||||||| ||| || | || ||| | || | || |||||||| ||||| Sbjct 120631 TTCTGTGAATGGGTTACTAGCACTGAAAACCGCCTTTACATTGGTTGGTTTGGTGTTCTA 120572 Query 8308 ATGATCCCAACCCTTCTTGCCGCTACAATTTGCTTCATTACCGCATTCGTTGCTGCTCCT 8367 |||||||| || ||| | | || || | ||||||| |||||| |||||||| ||| Sbjct 120571 ATGATCCCTACTCTTTTAACTGCAACTTCTGTGTTCATTATCGCATTTGTTGCTGCACCT 120512 Query 8368 CCTGTGGACATCGACGGCATCCGCGAACCAGTTGCTGGATCTCTCATGTACGGTAACAAC 8427 ||||| |||||||| || ||||| || || || | || ||||| | |||||||||||| Sbjct 120511 CCTGTAGACATCGATGGTATCCGTGAGCCTGTATCAGGTTCTCTACTTTACGGTAACAAC 120452 Query 8428 ATCATCTCTGGTGCAGTTGTTCCCAGCTCTAACGCAATTGGCCTCCACTTCTACCCCATC 8487 ||||| |||||||| |||||||| | || ||||||||||| || ||||||||||| || Sbjct 120451 ATCATTTCTGGTGCTGTTGTTCCTACATCAAACGCAATTGGTCTGCACTTCTACCCAATT 120392 Query 8488 TGGGAAGCCGCTTCTCTTGATGAGTGGCTCTACAACGGTGGTCCTTACCAGCTTGTAGTT 8547 |||||||| ||||| ||||| || ||||| |||||||||||||||||||| || | || Sbjct 120391 TGGGAAGCTGCTTCACTTGACGAATGGCTTTACAACGGTGGTCCTTACCAACTAATCGTA 120332 Query 8548 TTCCACTTCCTCCTTGGCGTCTTTGCT--TATATGGGTCGTGAATGGGAACTTTCTTACC 8605 | |||||| |||| ||| | ||||| || ||||||||||| ||||||||||||| || Sbjct 120331 TGTCACTTCTTCCTAGGCAT--TTGCTGCTACATGGGTCGTGAGTGGGAACTTTCTTTCC 120274 Query 8606 GCCTTGGCATGCGTCCTTGGATCTGTGTTGCATACTCTGCTCCTGTTGCCGCTGCTTCTG 8665 | | || |||||||| |||||| ||| || |||||||| || ||||| |||||| ||| Sbjct 120273 GTTTAGGAATGCGTCCATGGATCGCTGTAGCTTACTCTGCACCAGTTGCAGCTGCTACTG 120214 Query 8666 CTGTATTCCTTGTCTATCCTTTTGGTCAAGGTTCGTTCTCTGATGGTATGCCTCTTGGTA 8725 |||||||| | |||| ||| | ||||||||||| ||||| |||||||||||| | |||| Sbjct 120213 CTGTATTCATCATCTACCCTATCGGTCAAGGTTCATTCTCAGATGGTATGCCTTTGGGTA 120154 Query 8726 TCTCCGGTACGTTCAACTATATGCTTGTCTTCCAGGCTGAGCACAACATCCTGATGCACC 8785 | || || || ||||||| ||| |||| ||||| ||||||||||||||||| ||||||| Sbjct 120153 TTTCAGGAACTTTCAACTTCATGATTGTTTTCCAAGCTGAGCACAACATCCTTATGCACC 120094 Query 8786 CCTTCCACATGCTTGGTGTTGCTGGTGTCTTCGGCGGATCTCTCTTTTCCGCAATGCATG 8845 | |||||||||||||||||||||||||| ||||| || || || || || || ||||| | Sbjct 120093 CATTCCACATGCTTGGTGTTGCTGGTGTGTTCGGTGGTTCACTTTTCTCAGCTATGCACG 120034 Query 8846 GTTCACTCGTTACTTCTTCGCTGGTTCGTGAGACCACCGAAACCGAGTCTCAAAACTATG 8905 |||| || || |||||||| || | ||||| || || || | ||| || |||| || Sbjct 120033 GTTCTCTAGTAACTTCTTCACTTATCCGTGAAACTACTGAGAACGAATCAGCAAACGCTG 119974 Query 8906 GCTACAAGTTCGGTCAAGAAGAGGAAACTTACAACATTGTTGCCGCTCATGGCTACTTTG 8965 | ||||| |||||||||||||| |||||||||||||||||||| || || || ||||||| Sbjct 119973 GTTACAAATTCGGTCAAGAAGAAGAAACTTACAACATTGTTGCTGCACACGGTTACTTTG 119914 Query 8966 GTCGCTTGATCTTCCAATATGCATCTTTTAACAATTCTAGAAGCTTGCATTTCTTCCTCG 9025 |||| | ||||||||||| || || || ||||| ||| | | || |||||||| | Sbjct 119913 GTCGTCTAATCTTCCAATACGCTTCATTCAACAACTCTCGTTCACTTCACTTCTTCCTTG 119854 Query 9026 CTGCGTGGCCTGTGGTGGGAATCTGGTTTACCGCCCTCGGCGTCTCGACCATGGCTTTCA 9085 |||| |||||||| || || ||||||||||| || || || |||| || ||||| |||| Sbjct 119853 CTGCTTGGCCTGTAGTTGGTATCTGGTTTACTGCTCTTGGTATCTCTACTATGGCATTCA 119794 Query 9086 ACCTCAATGGCTTCAACTTCAACCAGTCCATTATCGACGGACAAGGACGAGTGCTCAACA 9145 |||| || || ||||||||||||||||| || | ||| ||||| || || |||||| Sbjct 119793 ACCTTAACGGATTCAACTTCAACCAGTCAGTTGTAGACTCTCAAGGTCGCGTTATCAACA 119734 Query 9146 CCTGGGCAGACGTACTTAACCGCGCAGGACTCGGTATGGAAGTCATGCACGAAAGAAACG 9205 | |||| ||| | | ||||| || || ||||||||||| |||||||||||||||| Sbjct 119733 CTTGGGGTGACATCATCAACCGTGCCAACCTTGGTATGGAAGTAATGCACGAAAGAAACG 119674 Query 9206 CACACAACTTCCCGCTTGACCTTGC 9230 ||||||||||||| || |||||||| Sbjct 119673 CACACAACTTCCCACTAGACCTTGC 119649 Score = 89.7 bits (98), Expect = 5e-13 Identities = 67/79 (85%), Gaps = 0/79 (0%) Strand=Plus/Minus Query 15403 GGGAATTAGCGCAGTTTGGTAGCGCGCCTGCTTTGGGAGCAGGATGCCACAGGTTCAAAT 15462 |||| ||||||||||||||||||| |||| ||||||| ||||| | | ||||||||||| Sbjct 27332 GGGATGTAGCGCAGTTTGGTAGCGCTCCTGTTTTGGGAACAGGAGGTCGCAGGTTCAAAT 27273 Query 15463 CCTGTATTCCCGACTCATA 15481 ||||| |||| || |||| Sbjct 27272 CCTGTCATCCCTACACATA 27254 >seq17 Length=88650 Score = 545 bits (604), Expect = 2e-150 Identities = 714/984 (73%), Gaps = 6/984 (1%) Strand=Plus/Minus Query 9827 GATGACTGGCTTAAACGAGATCGCTTTGTTTTTGTGGGTTGGTCTGGACTACTTCTTTTT 9886 ||||||||| | || || || ||||| || || || |||||||| || | || || Sbjct 87615 GATGACTGGTTGCGCCGTGAACGATTTGTGTTCGTTGGCTGGTCTGGTCTGTTACTCTTC 87556 Query 9887 CCCACTGCTTATCTTGCAATTGGTGGCTGGCTTACTGGCACTACGTTTGTCACGAGTTGG 9946 || || ||||| |||||| | ||||||||| | || || || || || || || |||| Sbjct 87555 CCTACAGCTTACCTTGCATTAGGTGGCTGGTTGACAGGAACCACATTCGTTACATCTTGG 87496 Query 9947 TACACTCACGGACTTGCAAGTAGTTACCTTGAGGG-TGCTAATTTCCTTACAGCGGCTGT 10005 ||||| || |||||||||||| |||| | || || ||| || ||| | ||||| || || Sbjct 87495 TACACACATGGACTTGCAAGTTCTTACTTAGAAGGATGC-AACTTCTTAACAGCAGCCGT 87437 Query 10006 CTCAACGCCTGCTGATGCTATGGGTCATTC--TCTTCTTCTACTTTGGGGTCCTGAGTCT 10063 ||||| || || | |||||||| || | || ||| || ||||| |||||| | Sbjct 87436 TTCAACTCCAGCAAACAGCATGGGTCACTCATTGTTGTTC--CTATGGGGGCCTGAGGCA 87379 Query 10064 CAGGGAGATTTCGTCCGCTGGATCCAGCTTGGGGGACTCTGGGCTTTTGTGGCGCTCCAC 10123 || || || || |||||| ||| | || || || |||||||| || || | || Sbjct 87378 CAAGGTGACTTTACTCGCTGGTGTCAGTTGGGTGGTCTGTGGGCTTTCGTAGCTTTACAT 87319 Query 10124 GGAGCCTTCGCTTTAATCGGCTTTATGTTACGCCAGTTTGAGCTGGCGAGATTAATTGGA 10183 || ||||| || | || || |||||| |||| |||||||| || || |||| | Sbjct 87318 GGTGCCTTTGCGCTTATTGGGTTTATGCTACGACAGTTTGAACTTGCAAGATCGGTAAAG 87259 Query 10184 ATCCGACCTTACAATGCTATCGCGTTTTCTGGGCCTATTGCTGTTTTTGTCAGTGTTTTC 10243 | || |||||||| ||||| || || || | ||||||||||| || || || ||| Sbjct 87258 CTTCGTCCTTACAACGCTATTGCCTTCTCAGCACCTATTGCTGTCTTCGTATCAGTCTTC 87199 Query 10244 CTCATCTATCCACTCGGACAGTCTAGTTGGTTCTTTGCGCCGAGTTTCGGCGTCGCGGCG 10303 || |||||||| | ||||| || | |||||||||||||| || || || || ||||| Sbjct 87198 CTTATCTATCCTTTGGGACAATCAGGCTGGTTCTTTGCGCCTAGCTTTGGTGTAGCGGCA 87139 Query 10304 ATTTTCCGCTTCCTTCTCTTCCTCCAGGGCTTTCATAATTGGACGCTCAATCCCTTCCAT 10363 || ||||| || |||| ||| |||| || || || || |||||||| || || ||||| Sbjct 87138 ATCTTCCGATTTATTCTTTTCTTCCAAGGTTTCCACAACTGGACGCTTAACCCTTTCCAC 87079 Query 10364 ATGATGGGAGTTGCTGGTATACTGGGAGGGGCGCTCCTATCAGCAATCCACGGAGTCACT 10423 |||||||| || || ||| | || || | || || |||| ||||| ||||||| || Sbjct 87078 ATGATGGGTGTGGCAGGTGTTCTAGGTGCTGCACTTCTATGTGCAATTCACGGAGCAACA 87019 Query 10424 GTAGAAAACACACTTTATCAAGATGGCGAACAAGCAAACACTTTCAAAGCTTTTGATAGC 10483 ||||| ||||| |||| | ||||||| || || ||||||||| || || | Sbjct 87018 GTAGAGAACACTCTTTTTGAAGATGGTGACGGTGCGAACACTTTCCGTGCATTCAACCCA 86959 Query 10484 ACTCAAGAAGAAGAGACCTATTCGATGGTTACTGCTAACCGTTTCTGGTCCCAGATATTT 10543 || |||| |||||||| || || ||||| || ||||||||||| ||||| || || ||| Sbjct 86958 ACGCAAGCCGAAGAGACATACTCTATGGTAACAGCTAACCGTTTTTGGTCACAAATCTTT 86899 Query 10544 GGAATTGCTTTTAGCAATAAACGCTGGCTTCATTTCTTTATGCTGTTTGTACCTGTTATG 10603 || | ||||| || ||||| |||||||||||||||||||| ||||| ||||| | Sbjct 86898 GGTGTAGCTTTCTCAAACAAACGTTGGCTTCATTTCTTTATGCTTTTTGTCCCTGTAACT 86839 Query 10604 GGTCTTTGGACCTCTTCTATTGGAATCATTGGTCTTGCTCTCAATCTTCGTGCTTACGAT 10663 |||||||||| | | ||||| | || || |||||||| || | || || || || Sbjct 86838 GGTCTTTGGATGAGTGCAATTGGTGTTATCGGACTTGCTCTTAACTTACGAGCATATGAC 86779 Query 10664 TTTGTATCTCAAGAGATCAGGGCGTCAGAAGATCCTGAATTTGAGACGTTCTATACGAAG 10723 ||||| || ||||||||| | || | || || |||||||| ||||| ||||| || || Sbjct 86778 TTTGTTTCACAAGAGATCCGTGCAGCTGAGGACCCTGAATTCGAGACTTTCTACACAAAA 86719 Query 10724 AATATCCTTCTGAACGAAGGTCTTCGTGCATGGATGGCACCAGTTGACCAACCACACGAA 10783 || || ||||| ||||||||| || | ||||||||||| | ||||| ||||| ||| Sbjct 86718 AACATTCTTCTAAACGAAGGTATTAGAGCATGGATGGCGGCTCAGGACCAGCCACATGAA 86659 Query 10784 AGCTTTGTTTTCCCAGAAGAAGTT 10807 | |||| |||||||| || ||| Sbjct 86658 AAACTTGTATTCCCAGAGGAGGTT 86635 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 516479315664000