Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Coccomyxa_20sp._20LA000219_20[genbank_20GCA_5F000812005.1_202015-01- 02] 106 sequences; 48,546,496 total letters Query= NC_020486.1 Length=171211 Score E Sequences producing significant alignments: (Bits) Value seq18 816 0.0 seq17 652 0.0 >seq18 Length=145863 Score = 816 bits (904), Expect = 0.0 Identities = 778/987 (79%), Gaps = 6/987 (1%) Strand=Plus/Minus Query 160876 TTTTGTAACTGGGTCACCAGCACCGACAACCGCCTTTATGTTGGTTGGTTCGGCGTCCTG 160935 || ||| | ||||| || ||||| || ||||||||||| |||||||||| || || || Sbjct 120631 TTCTGTGAATGGGTTACTAGCACTGAAAACCGCCTTTACATTGGTTGGTTTGGTGTTCTA 120572 Query 160936 ATGATTCCCTGCT-TGCTCGCTGCTACCATTTGT-TTCATCATTGCCTTCGTTGGTGCTC 160993 ||||| |||| || | | |||| || | ||| ||||| || || || |||| ||| | Sbjct 120571 ATGAT-CCCTACTCTTTTAACTGCAACT-TCTGTGTTCATTATCGCATTTGTTGCTGCAC 120514 Query 160994 CCCCTGTGGACATCGACGGCATTCGTGAACCCGTCGCTGGTTCGCTCATGTATGGAAACA 161053 | ||||| |||||||| || || ||||| || || | ||||| || | || || |||| Sbjct 120513 CTCCTGTAGACATCGATGGTATCCGTGAGCCTGTATCAGGTTCTCTACTTTACGGTAACA 120454 Query 161054 ACATCATCTCTGGTGCTGTTATCCCTTCTTCTAACGCTATCGGTCTGCACTTCTACCCCA 161113 ||||||| |||||||||||| | ||| | || ||||| || ||||||||||||||||| | Sbjct 120453 ACATCATTTCTGGTGCTGTTGTTCCTACATCAAACGCAATTGGTCTGCACTTCTACCCAA 120394 Query 161114 TCTGGGAAGCAGCAAGTCTGGACGAATGGCTCTACAACGGTGGTCCTTTCCAACTCGTTG 161173 | |||||||| || || ||||||||||| |||||||||||||||| |||||| | | Sbjct 120393 TTTGGGAAGCTGCTTCACTTGACGAATGGCTTTACAACGGTGGTCCTTACCAACTAATCG 120334 Query 161174 TGTTCCACTTCCTGATTGGCATCTA-TGCTTACATGGGTCGTGAGTGGGAACTTTCTTAC 161232 | | |||||| | | ||||| | |||| ||||||||||||||||||||||||||| | Sbjct 120333 TATGTCACTTCTTCCTAGGCATTTGCTGCT-ACATGGGTCGTGAGTGGGAACTTTCTTTC 120275 Query 161233 CGTCTGGGAATGCGTCCTTGGATTTGCGTAGCATACTCTGCTCCTGTCGCTGCAGCGAGT 161292 ||| | ||||||||||| ||||| ||||| |||||||| || || || || || | | Sbjct 120274 CGTTTAGGAATGCGTCCATGGATCGCTGTAGCTTACTCTGCACCAGTTGCAGCTGCTACT 120215 Query 161293 GCAGTGTTCCTGGTCTATCCTTTCGGTCAAGGTTCTTTCTCTGATGCAATGCCTCTGGGC 161352 || || ||| | |||| ||| ||||||||||||| ||||| |||| |||||| |||| Sbjct 120214 GCTGTATTCATCATCTACCCTATCGGTCAAGGTTCATTCTCAGATGGTATGCCTTTGGGT 120155 Query 161353 ATCTCTGGTACGTTCAACTACATGCTTGTCTTCCAAGCAGAGCACAACATTCTCATGCAC 161412 || || || || ||||||| |||| |||| |||||||| ||||||||||| || |||||| Sbjct 120154 ATTTCAGGAACTTTCAACTTCATGATTGTTTTCCAAGCTGAGCACAACATCCTTATGCAC 120095 Query 161413 CCCTTCCATATGCTCGGCGTAGCAGGTGTGTTTGGCGGTTCTCTGTTCAGTGCAATGCAC 161472 || ||||| ||||| || || || |||||||| || ||||| || ||| || |||||| Sbjct 120094 CCATTCCACATGCTTGGTGTTGCTGGTGTGTTCGGTGGTTCACTTTTCTCAGCTATGCAC 120035 Query 161473 GGTTCGCTGGTTACCTCTTCGCTGGTTCGTGAAACCACCGAAAACGAGTCCCAGAACTAT 161532 ||||| || || || ||||| || | |||||||| || || ||||| || ||| | Sbjct 120034 GGTTCTCTAGTAACTTCTTCACTTATCCGTGAAACTACTGAGAACGAATCAGCAAACGCT 119975 Query 161533 GGTTACAAGTTCGGTCAAGAAGAAGAGACCTACAACATCGTTGCTGCCCACGGGTACTTC 161592 |||||||| ||||||||||||||||| || |||||||| |||||||| ||||| ||||| Sbjct 119974 GGTTACAAATTCGGTCAAGAAGAAGAAACTTACAACATTGTTGCTGCACACGGTTACTTT 119915 Query 161593 GGTCGTCTGATTTTCCAATACGCTTCCTTCAACAACTCCCGCTCGCTGCACTTCTTCCTT 161652 |||||||| || |||||||||||||| ||||||||||| || || || |||||||||||| Sbjct 119914 GGTCGTCTAATCTTCCAATACGCTTCATTCAACAACTCTCGTTCACTTCACTTCTTCCTT 119855 Query 161653 GCTGCTTGGCCTGTTGTTGGCATCTGGTTCACTGCACTGGGCGTAAGCACCATGGCATTC 161712 |||||||||||||| ||||| |||||||| ||||| || || | || ||||||||| Sbjct 119854 GCTGCTTGGCCTGTAGTTGGTATCTGGTTTACTGCTCTTGGTATCTCTACTATGGCATTC 119795 Query 161713 AACCTGAATGGTTTCAACTTCAACCAGTCTATCGTTGATAGTCAGGGTAAAGTTATCAAC 161772 ||||| || || ||||||||||||||||| | || || ||| ||| ||||||||| Sbjct 119794 AACCTTAACGGATTCAACTTCAACCAGTCAGTTGTAGACTCTCAAGGTCGCGTTATCAAC 119735 Query 161773 ACCTGGGCAGACGTTCTCAACCGTGCTGGTCTTGGCATGGAAGTGATGCACGAGCGCAAT 161832 || |||| ||| | |||||||||| ||||| |||||||| |||||||| | || Sbjct 119734 ACTTGGGGTGACATCATCAACCGTGCCAACCTTGGTATGGAAGTAATGCACGAAAGAAAC 119675 Query 161833 GCTCACAACTTCCCTCTTGACCTTGCT 161859 || ||||||||||| || ||||||||| Sbjct 119674 GCACACAACTTCCCACTAGACCTTGCT 119648 >seq17 Length=88650 Score = 652 bits (722), Expect = 0.0 Identities = 759/1021 (74%), Gaps = 10/1021 (1%) Strand=Plus/Minus Query 162114 TGGTTTGATGTCCTTGACGACTGGCTTAAAAGAGACCGTTTCGTTTTTGTTGGCTGGTCT 162173 |||||||||| | || |||||| | | || || || || || |||||||||||| Sbjct 87630 TGGTTTGATGAAGTAGATGACTGGTTGCGCCGTGAACGATTTGTGTTCGTTGGCTGGTCT 87571 Query 162174 GGACTTCTTCTTTTTCCCACTGCTTATCTTGCTCTTGGGGGTTGGCTTACTGGGACTACT 162233 || || | || || || || ||||| ||||| | || || ||| | || || || || Sbjct 87570 GGTCTGTTACTCTTCCCTACAGCTTACCTTGCATTAGGTGGCTGGTTGACAGGAACCACA 87511 Query 162234 TTCGTCACGAGTTGGTATACTCACGGACTTGCGAGTTCCTATCTTGAGGG-TGCAAACTT 162292 ||||| || |||||| || || |||||||| ||||| || | || || ||||| ||| Sbjct 87510 TTCGTTACATCTTGGTACACACATGGACTTGCAAGTTCTTACTTAGAAGGATGCAA-CTT 87452 Query 162293 TCTTACTGCGGCAGTTTCTACTCCAGCAGACGCTATGGGTCATTCTCTTCTGCTTCTATG 162352 | || || || ||||| ||||||||| || |||||||| || | || | ||||| Sbjct 87451 CTTAACAGCAGCCGTTTCAACTCCAGCAAACAGCATGGGTCACTCATTGTTGTTCCTATG 87392 Query 162353 GGGTCCTGAGTCTCAAGGGGACTTCATCCGCTGGTGCCAACTTGGGGGACTCTGGACTTT 162412 ||| |||||| | ||||| ||||| | |||||||| || | || || || ||| |||| Sbjct 87391 GGGGCCTGAGGCACAAGGTGACTTTACTCGCTGGTGTCAGTTGGGTGGTCTGTGGGCTTT 87332 Query 162413 TGTGGCGCTCCACGGAGCCTTTGCACTTATAGGTTTCATGCTTCGCCAGTTTGAACTGGC 162472 || || | || || |||||||| ||||| || || ||||| || ||||||||||| || Sbjct 87331 CGTAGCTTTACATGGTGCCTTTGCGCTTATTGGGTTTATGCTACGACAGTTTGAACTTGC 87272 Query 162473 ACGACTTATCGGTA----TTCGTCCTTACAATGCTATTGCTTTCTCAGGTCCTATTGCTG 162528 | || |||||| ||||||||||||| |||||||| ||||||| |||||||||| Sbjct 87271 AAGA----TCGGTAAAGCTTCGTCCTTACAACGCTATTGCCTTCTCAGCACCTATTGCTG 87216 Query 162529 TATTCGTTAGTGTTTTTCTTATCTATCCTTTGGGACAATCGTCCTGGTTCTTCGCACCGT 162588 | ||||| || || ||||||||||||||||||||||| ||||||||| || || Sbjct 87215 TCTTCGTATCAGTCTTCCTTATCTATCCTTTGGGACAATCAGGCTGGTTCTTTGCGCCTA 87156 Query 162589 CGTTCGGGGTCGCAGCAATCTTCCGATTCCTGCTCTTCCTCCAAGGGTTCCATAACTGGA 162648 || || || || |||||||||||||| | || ||| ||||||| ||||| ||||||| Sbjct 87155 GCTTTGGTGTAGCGGCAATCTTCCGATTTATTCTTTTCTTCCAAGGTTTCCACAACTGGA 87096 Query 162649 CGCTAAATCCTTTTCACATGATGGGCGTAGCAGGTATCCTTGGTGGTGCATTGCTCTCTG 162708 |||| || ||||| ||||||||||| || |||||| | || |||| |||| | || | || Sbjct 87095 CGCTTAACCCTTTCCACATGATGGGTGTGGCAGGTGTTCTAGGTGCTGCACTTCTATGTG 87036 Query 162709 CTATTCATGGAGTGACAGTTGAAAATACACTGTACGAAGATGGCGAACAAGCAAACACTT 162768 | ||||| |||| ||||| || || || || | |||||||| || || ||||||| Sbjct 87035 CAATTCACGGAGCAACAGTAGAGAACACTCTTTTTGAAGATGGTGACGGTGCGAACACTT 86976 Query 162769 TTAAAGCATTTGACTCCACACAGGAGGAAGAAACGTATTCGATGGTTACTGCGAACCGCT 162828 | ||||| || | || || | ||||| || || || ||||| || || ||||| | Sbjct 86975 TCCGTGCATTCAACCCAACGCAAGCCGAAGAGACATACTCTATGGTAACAGCTAACCGTT 86916 Query 162829 TCTGGTCACAGATTTTCGGTATTGCTTTTAGTAACAAGCGTTGGTTGCATTTCTTTATGC 162888 | |||||||| || || ||| | ||||| ||||| |||||| | ||||||||||||| Sbjct 86915 TTTGGTCACAAATCTTTGGTGTAGCTTTCTCAAACAAACGTTGGCTTCATTTCTTTATGC 86856 Query 162889 TCTTTGTTCCCGTCATGGGTCTCTGGACAAGTTCTATCGGTATTATTGGACTCGCTCTCA 162948 | ||||| || || | ||||| |||| ||| | || ||| |||| ||||| ||||| | Sbjct 86855 TTTTTGTCCCTGTAACTGGTCTTTGGATGAGTGCAATTGGTGTTATCGGACTTGCTCTTA 86796 Query 162949 ATCTTCGTGCTTACGACTTTGTATCTCAAGAAGTTCGTGCGGCAGAAGACCCTGAGTTTG 163008 | | || || || |||||||| || ||||| | ||||| || || |||||||| || | Sbjct 86795 ACTTACGAGCATATGACTTTGTTTCACAAGAGATCCGTGCAGCTGAGGACCCTGAATTCG 86736 Query 163009 AGACGTTCTATACAAAGAACATTCTTCTGAATGAAGGACTTCGAGCATGGTTAGCACCAG 163068 |||| ||||| ||||| ||||||||||| || ||||| || |||||||| | || | Sbjct 86735 AGACTTTCTACACAAAAAACATTCTTCTAAACGAAGGTATTAGAGCATGGATGGCGGCTC 86676 Query 163069 TGGACCAACCTCATGAGAACTTTGTGTTCCCTGAAGAGGTCTTGCCAAGAGGCAACGCTC 163128 |||||| || ||||| || |||| ||||| || ||||| || ||| | || ||||||| Sbjct 86675 AGGACCAGCCACATGAAAAACTTGTATTCCCAGAGGAGGTTTTACCACGTGGAAACGCTC 86616 Query 163129 T 163129 | Sbjct 86615 T 86615 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547746474234960