Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Coccomyxa_20sp._20LA000219_20[genbank_20GCA_5F000812005.1_202015-01- 02] 106 sequences; 48,546,496 total letters Query= NC_020835.1 Length=47325 Score E Sequences producing significant alignments: (Bits) Value seq18 623 3e-174 >seq18 Length=145863 Score = 623 bits (690), Expect = 3e-174 Identities = 737/991 (74%), Gaps = 8/991 (1%) Strand=Plus/Plus Query 17831 TGAAGCTAAATCTAGCGGGAAGTTATGAGCATTACGCTCGTGCATAACTTCAAAGCCAAG 17890 |||||| | ||||| |||||||| || || || | |||||||| ||||| | ||||| Sbjct 119645 TGAAGCAAGGTCTAGTGGGAAGTTGTGTGCGTTTCTTTCGTGCATTACTTCCATACCAAG 119704 Query 17891 GTTAGCTCTGTTGAGTACGTCAGCCCA--TGTAGGTACGACTTGTCCTCCAGCTGCTACA 17948 ||| || | ||||| | |||| |||| ||| | || || | ||| || ||||| Sbjct 119705 GTTGGCACGGTTGATGATGTCACCCCAAGTGTTGATA--ACGCGACCTTGAGAGTCTACA 119762 Query 17949 ATGGATTGGTTGAAGTTGAATCCATTGAGATTAAAAGCCATAGTGGAGATTCCCATAGAG 18008 | || ||||||||||||||||| || || || || |||||||| ||||| || | || Sbjct 119763 ACTGACTGGTTGAAGTTGAATCCGTTAAGGTTGAATGCCATAGTAGAGATACCAAGAGCA 119822 Query 18009 GTAAGCCATATGCAAGTGACGGGCCAAGCAGCCAAGAAGAAATGTAGACTCCTGCTATTG 18068 |||| ||| || | | || ||||||||||| | |||||| || || | ||| Sbjct 119823 GTAAACCAGATACCAACTACAGGCCAAGCAGCAAGGAAGAAGTGAAGTGAACGAGAGTTG 119882 Query 18069 TTAAAGCTAGCATACTGGAAGATGAGTCTCCCAAAGTAGCCATGAGCCGCAACAATATTA 18128 || || ||| || |||||||| || | |||||||| || || || |||||||| || Sbjct 119883 TTGAATGAAGCGTATTGGAAGATTAGACGACCAAAGTAACCGTGTGCAGCAACAATGTTG 119942 Query 18129 TACGTCTCTTCTTCTTGGCCAAATTTATATCCATAGTTCTGAGACTCAAGCTCAGTCGTT 18188 || || ||||||||||| || ||||| || ||| ||| || || |||||| ||| Sbjct 119943 TAAGTTTCTTCTTCTTGACCGAATTTGTAACCAGCGTTTGCTGATTCGTTCTCAGTAGTT 120002 Query 18189 TCTCTAATAAGTGAGGAAGTAACAAGACTTCCGTGCATAGCAGCGAATAAAGCTCCACCG 18248 || | |||||||| ||||| || ||| ||||||||||| | ||| | | |||||| Sbjct 120003 TCACGGATAAGTGAAGAAGTTACTAGAGAACCGTGCATAGCTGAGAAAAGTGAACCACCG 120062 Query 18249 AATACCCCTGCAACACCGAGCATATGGAACGGATGCATAAGGATATTGTGTTCGGCTTGG 18308 || || || |||||||| ||||| ||||| || ||||||||||| ||||| || |||||| Sbjct 120063 AACACACCAGCAACACCAAGCATGTGGAATGGGTGCATAAGGATGTTGTGCTCAGCTTGG 120122 Query 18309 AATACGAACATGAAATTGAAAGTACCGCTAATACCAAGAGGCATACCATCAGAGAAACTC 18368 || || | |||||| |||||||| || |||||| | |||||||||||| ||||| Sbjct 120123 AAAACAATCATGAAGTTGAAAGTTCCTGAAATACCCAAAGGCATACCATCTGAGAATGAA 120182 Query 18369 CCTTGTCCAAAAGGATAAACGAGAAATACTG-AGAAGGCAGCTGCTACTGGTGCGGAATA 18427 ||||| || | ||| || | || ||||| | || | |||||||| |||||||| || || Sbjct 120183 CCTTGACCGATAGGGTAGATGATGAATACAGCAGTA-GCAGCTGCAACTGGTGCAGAGTA 120241 Query 18428 AGCAACACAAATCCACGGGCGCATACCTAGTCTATAACTAAGTTCCCATTGTCGTCCCAT 18487 ||| ||| ||||| || ||||| |||| | || ||||||||| | || ||||| Sbjct 120242 AGCTACAGCGATCCATGGACGCATTCCTAAACGGAAAGAAAGTTCCCACTCACGACCCAT 120301 Query 18488 GTAAGCTGC-GATGCCGATGAGAAAGTGGAACACAATGAGTTGATATGGTCCTCCGTTAT 18546 || ||| || ||||| | || ||||| | || || ||||| || || || ||||| | Sbjct 120302 GT-AGCAGCAAATGCCTAGGAAGAAGTGACATACGATTAGTTGGTAAGGACCACCGTTGT 120360 Query 18547 ATAACCACTCGTCGAGGGTTGCAGCTTCCCAGATTGGGTAGAAGTGAAGACCGATTGCGT 18606 | | ||| ||||| || | ||||||||||| |||||||||||||| ||||| ||||||| Sbjct 120361 AAAGCCATTCGTCAAGTGAAGCAGCTTCCCAAATTGGGTAGAAGTGCAGACCAATTGCGT 120420 Query 18607 TAGATGACGGGACGATTGCCCCTGATATGATGTTGTTTCCATAGAGTAAGGCTCCTGAGA 18666 | |||| || || | || || || ||||||||||| || || |||| | ||||| | Sbjct 120421 TTGATGTAGGAACAACAGCACCAGAAATGATGTTGTTACCGTAAAGTAGAGAACCTGATA 120480 Query 18667 CAGGCTCACGAATACCATCTATGTCAACGGGAGGAGCAGCAACAAATGCAATCAAAAATG 18726 |||||||||| |||||||| ||||| || ||||| |||||||||||||| || | || Sbjct 120481 CAGGCTCACGGATACCATCGATGTCTACAGGAGGTGCAGCAACAAATGCGATAATGAACA 120540 Query 18727 CTGTAGCTGCGGTTAAAAGTGCAGGGATCATAAGTACCCCAAACCACCCCACGTAGAGGC 18786 | | || ||| |||||||| | ||||||||| || || |||||||| || | ||| |||| Sbjct 120541 CAGAAGTTGCAGTTAAAAGAGTAGGGATCATTAGAACACCAAACCAACCAATGTAAAGGC 120600 Query 18787 GGTTGTTTGTACTCGTAACCCAGTCACATAA 18817 |||| | || || |||||||| ||||| || Sbjct 120601 GGTTTTCAGTGCTAGTAACCCATTCACAGAA 120631 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 151318209527964