Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Coccomyxa_20sp._20LA000219_20[genbank_20GCA_5F000812005.1_202015-01- 02] 106 sequences; 48,546,496 total letters Query= NC_020837.1 Length=198013 Score E Sequences producing significant alignments: (Bits) Value seq18 735 0.0 seq17 574 6e-159 >seq18 Length=145863 Score = 735 bits (814), Expect = 0.0 Identities = 762/1003 (76%), Gaps = 4/1003 (0%) Strand=Plus/Plus Query 103166 TCTGCAGCAGCAAGGTCAAGGGGGAAGTTGTGAGCGTTACGCTCGTGCATGACTTCCATA 103225 ||| | | ||||||||| || ||||||||||| ||||| | |||||||| ||||||||| Sbjct 119640 TCTACTGAAGCAAGGTCTAGTGGGAAGTTGTGTGCGTTTCTTTCGTGCATTACTTCCATA 119699 Query 103226 CCCAGACCAGCGCGGTTGAGAACGTCTGCCCAGGTGTTCAACACACGACCCTGACCATCA 103285 || || || ||||||| | ||| |||| ||||| | || ||||| ||| || Sbjct 119700 CCAAGGTTGGCACGGTTGATGATGTCACCCCAAGTGTTGATAACGCGACCTTGAGAGTCT 119759 Query 103286 AGGATGGACTGGTTGAAGTTGAATCCGTTCAGGTTGAACGCCATGGTGCTAACACCAAGT 103345 | | ||||||||||||||||||||||| |||||||| ||||| || | |||||| Sbjct 119760 ACAACTGACTGGTTGAAGTTGAATCCGTTAAGGTTGAATGCCATAGTAGAGATACCAAGA 119819 Query 103346 GCGGTGAACCAGATACCCACTACTGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGGAG 103405 || || ||||||||||| ||||| || | ||| Sbjct 119820 GCAGTAAACCAGATACCAACTACAGGCCAAGCAGCAAGGAAGAAGTGAAGTGAACGAGAG 119879 Query 103406 TTGTTGAATGATGCGTATTGGAAGATCAAACGACCGAAGTAACCATGAGCGGCTACGATG 103465 ||||||||||| |||||||||||||| | |||||| |||||||| || || || || ||| Sbjct 119880 TTGTTGAATGAAGCGTATTGGAAGATTAGACGACCAAAGTAACCGTGTGCAGCAACAATG 119939 Query 103466 TTGTATGTCTCTTCCTCTTGTCCGAACTTGTAACCATAGTTTTGAGATTCAGTTTCAGTC 103525 ||||| || ||||| ||||| ||||| ||||||||| |||| ||||| | ||||| Sbjct 119940 TTGTAAGTTTCTTCTTCTTGACCGAATTTGTAACCAGCGTTTGCTGATTCGTTCTCAGTA 119999 Query 103526 GTCTCACGAACCAGCGAGGACGTAACAAGCGAACCGTGCATAGCACTGAACAGTGAACCA 103585 || ||||| | || || || || || || |||||||||||||| ||| ||||||||| Sbjct 120000 GTTTCACGGATAAGTGAAGAAGTTACTAGAGAACCGTGCATAGCTGAGAAAAGTGAACCA 120059 Query 103586 CCGAAGACTCCAGCAACGCCCAGCATGTGGAAGGGGTGCATGAGAATGTTATGTTCGGCT 103645 ||||| || |||||||| || ||||||||||| |||||||| || ||||| || || ||| Sbjct 120060 CCGAACACACCAGCAACACCAAGCATGTGGAATGGGTGCATAAGGATGTTGTGCTCAGCT 120119 Query 103646 TGGAAGACCAGCATGTAGTTGAAGGTTCCCGAAATACCCAAAGGCATAGCATCGGAGAAC 103705 ||||| || | |||| ||||||| ||||| |||||||||||||||||| |||| ||||| Sbjct 120120 TGGAAAACAATCATGAAGTTGAAAGTTCCTGAAATACCCAAAGGCATACCATCTGAGAAT 120179 Query 103706 GAACCTTGACCAAAGGGGTAGACCAAGAATACTGCGGACGCAGCCGCAACAGGAGCAGAG 103765 ||||||||||| | ||||||| | |||||| || | ||||| ||||| || |||||| Sbjct 120180 GAACCTTGACCGATAGGGTAGATGATGAATACAGCAGTAGCAGCTGCAACTGGTGCAGAG 120239 Query 103766 TATGCGACACAGATCCAGGGGCGCATGCCCAGACGGTAGGACAATTCCCACTCACGTCCC 103825 || || ||| |||||| || ||||| || | |||| | || | |||||||||||| ||| Sbjct 120240 TAAGCTACAGCGATCCATGGACGCATTCCTAAACGGAAAGAAAGTTCCCACTCACGACCC 120299 Query 103826 ATATATGCA-TAGATGCCAATGAGGAAGTGGAATACTACAAGTTGGAAAGGACCACCGTT 103884 || || ||| | ||||| | || |||||| |||| | |||||| ||||||||||||| Sbjct 120300 ATGTA-GCAGCAAATGCCTAGGAAGAAGTGACATACGATTAGTTGGTAAGGACCACCGTT 120358 Query 103885 ATACAGCCACTCATCAAGAGATGCTGCTTCCCAAATGGGATAGAAGTGAAGACCAATTGC 103944 || ||||| || ||||| || || ||||||||||| || |||||||| ||||||||||| Sbjct 120359 GTAAAGCCATTCGTCAAGTGAAGCAGCTTCCCAAATTGGGTAGAAGTGCAGACCAATTGC 120418 Query 103945 GTTGGAGGAGGGAACAACTGCACCAGAGATGATGTTGTTACCGTACATGAGTGAACCAGC 104004 ||| || | |||||||| |||||||| ||||||||||||||||| | || ||||| | Sbjct 120419 GTTTGATGTAGGAACAACAGCACCAGAAATGATGTTGTTACCGTAAAGTAGAGAACCTGA 120478 Query 104005 GACGGGTTCACGAATGCCGTCGATATCGACGGGAGGTGCTGCTACGAAAGCAACGATGAA 104064 || || ||||| || || ||||| || || |||||||| || || || || | ||||| Sbjct 120479 TACAGGCTCACGGATACCATCGATGTCTACAGGAGGTGCAGCAACAAATGCGATAATGAA 120538 Query 104065 -GCAGATGGTTGCCGCCAACAGAGTTGGGATCATCAGCACACCGAACCAACCAACATAGA 104123 |||| ||||| | || ||||| |||||||| || ||||| |||||||||| || | Sbjct 120539 CACAGA-AGTTGCAGTTAAAAGAGTAGGGATCATTAGAACACCAAACCAACCAATGTAAA 120597 Query 104124 GACGGTTGTTTGTCGATGTAACCCACTCGCAGAAGTTATCCCA 104166 | ||||| | || |||||||| || |||||| | |||| Sbjct 120598 GGCGGTTTTCAGTGCTAGTAACCCATTCACAGAAGCGAGCCCA 120640 >seq17 Length=88650 Score = 574 bits (636), Expect = 6e-159 Identities = 741/1011 (73%), Gaps = 20/1011 (2%) Strand=Plus/Plus Query 101710 AGAGCGTTGCCTCTTGGCAATACCTCTTCAGGAAATACAAAGTTTTCATGCGGTTGATCG 101769 |||||||| || | ||| || ||||| || || ||||||| |||||||| || || || Sbjct 86615 AGAGCGTTTCCACGTGGTAAAACCTCCTCTGGGAATACAAGTTTTTCATGTGGCTGGTCC 86674 Query 101770 ACTGGTGCCAACCATGCACGTAGACCTTCATTCAATAGGATGTTCTTTGTGTAGAACGTC 101829 | |||| |||||| | | |||||| || | || ||||| ||||||||||| ||| Sbjct 86675 TGAGCCGCCATCCATGCTCTAATACCTTCGTTTAGAAGAATGTTTTTTGTGTAGAAAGTC 86734 Query 101830 TCGAACTCTGGATCTTCTGCTGCTCTGATCTCTTGGGATACAAAGTCATAAGCACGAAGG 101889 ||||| || || || || ||||| | ||||||||| || ||||||||||| || || | | Sbjct 86735 TCGAATTCAGGGTCCTCAGCTGCACGGATCTCTTGTGAAACAAAGTCATATGCTCGTAAG 86794 Query 101890 TTGAGAGCAAGACCAATAATACCGATGGAACTTGTCCACAGACCCATAACAGGAACAAAG 101949 || |||||||| || |||| ||| || | ||| |||| ||||| | ||||| ||||| Sbjct 86795 TTAAGAGCAAGTCCGATAACACCAATTGCACTCATCCAAAGACCAGTTACAGGGACAAAA 86854 Query 101950 AGCATAAAGAAATGCAACCACCTCTTATTACTAAATGCAATACCAAAGATTTGAGACCAG 102009 |||||||||||||| | ||| | || || || || | |||||||||||| ||||| Sbjct 86855 AGCATAAAGAAATGAAGCCAACGTTTGTTTGAGAAAGCTACACCAAAGATTTGTGACCAA 86914 Query 102010 AAACGGTTTGCTGTAACCATTGAATAAGTCTCTTCCTCTTGTGTGGAATCGAATGCTTTG 102069 |||||||| ||||| ||||| || || |||||||| |||| || | | |||||| | Sbjct 86915 AAACGGTTAGCTGTTACCATAGAGTATGTCTCTTCGGCTTGCGTTGGGTTGAATGCACGG 86974 Query 102070 AAAGTGTTTGCTTGATCACCATCTTCATACAGAGTGTTCTCCACAGTGACACCGTGGATT 102129 |||||||| || |||||||||||| | ||||||||||| || || | ||||| ||| Sbjct 86975 AAAGTGTTCGCACCGTCACCATCTTCAAAAAGAGTGTTCTCTACTGTTGCTCCGTGAATT 87034 Query 102130 GCTGACAGCAGTGCTCCTCCCAGGATACCTGCAACACCCATCATATGGAATGGGTTGAGC 102189 || | || ||||| | || || | |||||| ||||||||||| ||||| ||||| ||| Sbjct 87035 GCACATAGAAGTGCAGCACCTAGAACACCTGCCACACCCATCATGTGGAAAGGGTTAAGC 87094 Query 102190 GTCCAGTTATGGAAGCCCTGTAGGAAGAGTAGGAATCTAAATATCGCTGCAACACCAAAC 102249 |||||||| ||||| || || | ||| || | |||| || || || || |||||||| Sbjct 87095 GTCCAGTTGTGGAAACCTTGGAAGAAAAGAATAAATCGGAAGATTGCCGCTACACCAAAG 87154 Query 102250 GAGGGCGCAAAGAACCAACTGGACTGTCCGAGAGGATAGATGAGAAACACACTGACAAAA 102309 |||||||||||||| | || ||||| | ||||||||| || || || || || Sbjct 87155 CTAGGCGCAAAGAACCAGCCTGATTGTCCCAAAGGATAGATAAGGAAGACTGATACGAAG 87214 Query 102310 ACAGCGATAGGCCCAGAGAACGCAATAGCATTGTACGGACGAA----TTCCAATTAACCT 102365 ||||| ||||| | ||||| |||||||| ||||| ||||||| | || || || Sbjct 87215 ACAGCAATAGGTGCTGAGAAGGCAATAGCGTTGTAAGGACGAAGCTTTACCGAT----CT 87270 Query 102366 AGCCAACTCGAATTGACGAAGCATGAAACCAATGAGGGCAAATGCACCGTGGAGAGCCAC 102425 || | || || || || ||||| || ||||| || ||||| ||||| || | ||| || Sbjct 87271 TGCAAGTTCAAACTGTCGTAGCATAAACCCAATAAGCGCAAAGGCACCATGTAAAGCTAC 87330 Query 102426 AAAAGCCCAGAGTCC-CCCAAGTTGGAC-CCACCTGACGAAA-TCTCCTTGAGCTTCAGG 102482 |||||||| || || ||||| | ||| ||| | || ||| || ||||| || ||||| Sbjct 87331 GAAAGCCCACAGACCACCCAACT--GACACCAGC-GAGTAAAGTCACCTTGTGCCTCAGG 87387 Query 102483 ACCCCAAAGTAGAAGAAGA--GAATGACCCATAGAGTCAGCAGGCGTTGACACAGCAGCT 102540 ||||| || ||| || | || |||||||| || || || ||||| || || ||| Sbjct 87388 CCCCCATAG--GAACAACAATGAGTGACCCATGCTGTTTGCTGGAGTTGAAACGGCTGCT 87445 Query 102541 GTAAGGAAATTAGCA-CCTTCAAGGTAACTAGACGCAAGCCCGTGGGTATACCAGGAAGT 102599 || | ||| || ||| ||||| | |||| | ||||| || || || ||||| || || Sbjct 87446 GTTAAGAAGTT-GCATCCTTCTAAGTAAGAACTTGCAAGTCCATGTGTGTACCAAGATGT 87504 Query 102600 AGCAAACGTCGTGCCAGTAAGCCAGCCCCCAATTGCGAGATAAGCAGTGGGAAAAAGAAG 102659 | | || || || || || | |||||| || | ||| || ||||| || || || || | Sbjct 87505 AACGAATGTGGTTCCTGTCAACCAGCCACCTAATGCAAGGTAAGCTGTAGGGAAGAGTAA 87564 Query 102660 TAGTCCAGACCAACCCACAAAGACAAAGCGATCTCGTTTAATCCAGTCATC 102710 || |||||||| || || || ||||| || || || | ||||||||| Sbjct 87565 CAGACCAGACCAGCCAACGAACACAAATCGTTCACGGCGCAACCAGTCATC 87615 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 633512760594480