Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Coccomyxa_20sp._20LA000219_20[genbank_20GCA_5F000812005.1_202015-01- 02] 106 sequences; 48,546,496 total letters Query= NC_020838.1 Length=45728 Score E Sequences producing significant alignments: (Bits) Value seq18 670 0.0 >seq18 Length=145863 Score = 670 bits (742), Expect = 0.0 Identities = 737/976 (76%), Gaps = 10/976 (1%) Strand=Plus/Plus Query 21462 TCCACGGATGCAAGGTCAAGCGGGAAGTTGTGTGCGTTCCGCTCATGCATCACCTCAAAG 21521 || || || |||||||| || ||||||||||||||||| | || ||||| || || | Sbjct 119640 TCTACTGAAGCAAGGTCTAGTGGGAAGTTGTGTGCGTTTCTTTCGTGCATTACTTCCATA 119699 Query 21522 CCAAGGTTGGCACGGTTAAGAATGTCAGCCCAGGTGTTGATCACCTGTCCATCAGCAGCT 21581 ||||||||||||||||| | |||||| |||| |||||||| || | || | || || Sbjct 119700 CCAAGGTTGGCACGGTTGATGATGTCACCCCAAGTGTTGATAACGCGACCTTGAGAGTCT 119759 Query 21582 AGCAGAGATTGGTTAAAGTTGAAACCATTCAAGTTGAAAGCCATGGTAGACACGCCAAGC 21641 | | || ||||| |||||||| || || | |||||| ||||| ||||| | ||||| Sbjct 119760 ACAACTGACTGGTTGAAGTTGAATCCGTTAAGGTTGAATGCCATAGTAGAGATACCAAGA 119819 Query 21642 GCAGCAAACCAAATACCTACAACAGGCCAGGCAGCAAGAAAGAAATGAAGACTACGGGAA 21701 |||| |||||| ||||| || |||||||| |||||||| ||||| ||||| ||| || Sbjct 119820 GCAGTAAACCAGATACCAACTACAGGCCAAGCAGCAAGGAAGAAGTGAAGTGAACGAGAG 119879 Query 21702 TTATTAAAGCTAGCATATTGGAAGATAAGCCGACCAAAATAGCCGTGAGCAGCAACAATA 21761 || || || ||| ||||||||||| || |||||||| || ||||| ||||||||||| Sbjct 119880 TTGTTGAATGAAGCGTATTGGAAGATTAGACGACCAAAGTAACCGTGTGCAGCAACAATG 119939 Query 21762 TTGTAAGTCTCTTCCTCTTGACCAAACTTGTAACCATAGTTCTGTGAAACCTCTTCAGTC 21821 |||||||| ||||| |||||||| || ||||||||| ||| ||| | | ||||| Sbjct 119940 TTGTAAGTTTCTTCTTCTTGACCGAATTTGTAACCAGCGTTTGCTGATTCGTTCTCAGTA 119999 Query 21822 GTCTCACGAATGAGTGACGACGTGACCAGGCTACCGTGCATAGCAGAGAACAAACTCCCA 21881 || ||||| || ||||| || || || || |||||||||||| ||||| | ||| Sbjct 120000 GTTTCACGGATAAGTGAAGAAGTTACTAGAGAACCGTGCATAGCTGAGAAAAGTGAACCA 120059 Query 21882 CCAAATACGCCGGCCACACCCAGCATGTGAAAAGGATGCATAAGAATATTGTGCTCAGCC 21941 || || || || || ||||| |||||||| || || |||||||| || ||||||||||| Sbjct 120060 CCGAACACACCAGCAACACCAAGCATGTGGAATGGGTGCATAAGGATGTTGTGCTCAGCT 120119 Query 21942 TGGAACACCAGCATGTAGTTGAAGGTGCCGGATATCCCCAAGGGCATAGCATCAGAAAAA 22001 ||||| || | |||| ||||||| || || || || ||||| |||||| |||| || || Sbjct 120120 TGGAAAACAATCATGAAGTTGAAAGTTCCTGAAATACCCAAAGGCATACCATCTGAGAAT 120179 Query 22002 GAGCCCTGTCCAAACGGATAAACAAGGAACACAGCAGTCGCAGCGGCGACAGGAGCAGAG 22061 || || || || | || || | | ||| |||||||| ||||| || || || |||||| Sbjct 120180 GAACCTTGACCGATAGGGTAGATGATGAATACAGCAGTAGCAGCTGCAACTGGTGCAGAG 120239 Query 22062 TACGCAACAAAGATCCAGGGCCTCATCCCTAGTCGATAGCTAAGTTCCCACTCTCGTCCC 22121 || || ||| |||||| || | ||| |||| || | |||||||||||| || ||| Sbjct 120240 TAAGCTACAGCGATCCATGGACGCATTCCTAAACGGAAAGAAAGTTCCCACTCACGACCC 120299 Query 22122 ATGTA--AGCAAAGACGCCAATGAGGAAGTGGAATACGGTGAGTTGGAATGGACCGCCGT 22179 ||||| ||||| | ||| | || |||||| ||||| | |||||| | ||||| |||| Sbjct 120300 ATGTAGCAGCAA--ATGCCTAGGAAGAAGTGACATACGATTAGTTGGTAAGGACCACCGT 120357 Query 22180 TGTACAGCCATTCATCAAGTGTAGCAGCTTCCCAAATTGGGTAGAAGTGTAGTCCGATGG 22239 |||| |||||||| ||||||| ||||||||||||||||||||||||||| || || || | Sbjct 120358 TGTAAAGCCATTCGTCAAGTGAAGCAGCTTCCCAAATTGGGTAGAAGTGCAGACCAATTG 120417 Query 22240 CATTACTGCTCGGAACGACGGCTCCTGATATGATGTTGTTACCATACAACAGGGAGCCAG 22299 | || | ||||| || || || || |||||||||||||| || | || || || | Sbjct 120418 CGTTTGATGTAGGAACAACAGCACCAGAAATGATGTTGTTACCGTAAAGTAGAGAACCTG 120477 Query 22300 CGACGGGTTCTCGGATTCCATCGATGTCAACAGGTGGTGCGCCAACAAAGGCGATAATAA 22359 || || || ||||| ||||||||||| ||||| ||||| ||||||| |||||||| | Sbjct 120478 ATACAGGCTCACGGATACCATCGATGTCTACAGGAGGTGCAGCAACAAATGCGATAATGA 120537 Query 22360 A---ACAAGTTGTAGCGGCAAGGAGGCACGGAATCATAAGGACTCCGAACCATCCTACAT 22416 | | |||||| || || ||| || ||||| || || || ||||| || | | Sbjct 120538 ACACAGAAGTTGCAG-TTAAAAGAG--TAGGGATCATTAGAACACCAAACCAACCAATGT 120594 Query 22417 AAAGACGGTTATTAGT 22432 |||| ||||| | ||| Sbjct 120595 AAAGGCGGTTTTCAGT 120610 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 146207815960680