Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Coccomyxa_20sp._20LA000219_20[genbank_20GCA_5F000812005.1_202015-01- 02] 106 sequences; 48,546,496 total letters Query= NC_020845.1 Length=180977 Score E Sequences producing significant alignments: (Bits) Value seq18 717 0.0 seq17 497 1e-135 >seq18 Length=145863 Score = 717 bits (794), Expect = 0.0 Identities = 757/989 (77%), Gaps = 6/989 (1%) Strand=Plus/Plus Query 124046 GATGCTAGGTCTAGTGGGAAGTTGTGTGCATTTCTTTCATGCATAACTTCCATACCCAAG 124105 || || ||||||||||||||||||||||| |||||||| ||||| ||||||||||| | | Sbjct 119646 GAAGCAAGGTCTAGTGGGAAGTTGTGTGCGTTTCTTTCGTGCATTACTTCCATACCAAGG 119705 Query 124106 TTTGCTCTGTTTAGAACATCACCCCATGTTGGGACGATTTTTCCGTTAGCATCAACAACT 124165 || || | ||| | | |||||||| || || | || | || || |||||| Sbjct 119706 TTGGCACGGTTGATGATGTCACCCCAAGTGTTGATAACGCGACCTTGAGAGTCTACAACT 119765 Query 124166 GATTGGTTAAAGTTGAAACCATTCAAGTTGAATGCCATTGTGCAGATACCCATAGAGGTT 124225 || ||||| |||||||| || || | |||||||||||| || ||||||| | || || Sbjct 119766 GACTGGTTGAAGTTGAATCCGTTAAGGTTGAATGCCATAGTAGAGATACCAAGAGCAGTA 119825 Query 124226 AACCATACACATACAACAGGGAAAACTGCTAGGAAGAAGTGAAGACTTCTTGAGTTGTTG 124285 ||||| | || || ||||| || | || |||||||||||||| | ||||||||| Sbjct 119826 AACCAGATACCAACTACAGGCCAAGCAGCAAGGAAGAAGTGAAGTGAACGAGAGTTGTTG 119885 Query 124286 AATGAAGCATACTGGAAGATAAGACGACCAAAGTAACCGTGTGCTGCTACTATGTTGTAT 124345 |||||||| || |||||||| ||||||||||||||||||||||| || || |||||||| Sbjct 119886 AATGAAGCGTATTGGAAGATTAGACGACCAAAGTAACCGTGTGCAGCAACAATGTTGTAA 119945 Query 124346 GTTTCTTCTTCTTGTCCGAACTTATAACCATAGTTCTGTGACTCTTGCTCTGTTGTTTCT 124405 |||||||||||||| ||||| || |||||| ||| ||| || | ||| || ||||| Sbjct 119946 GTTTCTTCTTCTTGACCGAATTTGTAACCAGCGTTTGCTGATTCGTTCTCAGTAGTTTCA 120005 Query 124406 CTGATTAGAGAAGATGTAACAAGAGAACCATGCATTGCTGAGAATAAAGATCCTCCGAAC 124465 | ||| || ||||| || || |||||||| ||||| |||||||| | || || |||||| Sbjct 120006 CGGATAAGTGAAGAAGTTACTAGAGAACCGTGCATAGCTGAGAAAAGTGAACCACCGAAC 120065 Query 124466 ATTCCTGCTACTCCTGCCATGTGGAAAGGATGCATTAGAATGTTATGCTCTGCTTGGAAA 124525 | || || || || ||||||||| || ||||| || ||||| ||||| ||||||||| Sbjct 120066 ACACCAGCAACACCAAGCATGTGGAATGGGTGCATAAGGATGTTGTGCTCAGCTTGGAAA 120125 Query 124526 ACGAACATAAAGTTGAAAGTACCTGAGATACCAAGTGGCATACCATCAGAGAATGAACCC 124585 || | ||| ||||||||||| ||||| ||||| | ||||||||||| ||||||||||| Sbjct 120126 ACAATCATGAAGTTGAAAGTTCCTGAAATACCCAAAGGCATACCATCTGAGAATGAACCT 120185 Query 124586 TGACCAAATGGGTATACTAAGAATACAGCGAATGCAGCAGATACTGGTGCTGAATAAGCA 124645 ||||| | ||||| | | ||||||||| ||||| | |||||||| || ||||| Sbjct 120186 TGACCGATAGGGTAGATGATGAATACAGCAGTAGCAGCTGCAACTGGTGCAGAGTAAGCT 120245 Query 124646 ACACAGATCCAAGGACGCATTCCTAATCTGTATGATAGTTCCCACTGTCTTCCCATGTAT 124705 ||| |||||| |||||||||||||| | | | || |||||||||| | |||||||| Sbjct 120246 ACAGCGATCCATGGACGCATTCCTAAACGGAAAGAAAGTTCCCACTCACGACCCATGTA- 120304 Query 124706 GCTG-AAATACCAATAAGGAAGTGGAAAATTACCAACTGATAAGGACCACCATTATACAA 124764 || | |||| || | | |||||| | | | | || ||||||||||| || || | Sbjct 120305 GCAGCAAATGCCTAGGAAGAAGTGACATACGATTAGTTGGTAAGGACCACCGTTGTAAAG 120364 Query 124765 CCATTCATCAACAGTTGCTGCTTCCCAGATTGGGTAGAAGTGTAGTCCGATAGCGTTTGA 124824 |||||| |||| | || |||||||| |||||||||||||| || || || |||||||| Sbjct 120365 CCATTCGTCAAGTGAAGCAGCTTCCCAAATTGGGTAGAAGTGCAGACCAATTGCGTTTGA 120424 Query 124825 TGATGGAACAACTGCACCAGAGATGATGTTGTTACCATATAAGAAAGAACCCGCTACTGG 124884 || |||||||| |||||||| |||||||||||||| || | | |||||| | ||| || Sbjct 120425 TGTAGGAACAACAGCACCAGAAATGATGTTGTTACCGTAAAGTAGAGAACCTGATACAGG 120484 Query 124885 TTCTCTGATTCCGTCGATATCGACAGGAGGTGCTGCAATAAATGCAACGATGAA-ACATG 124943 || | ||| || ||||| || ||||||||||| |||| |||||| | ||||| ||| | Sbjct 120485 CTCACGGATACCATCGATGTCTACAGGAGGTGCAGCAACAAATGCGATAATGAACACA-G 120543 Query 124944 CTGCTGCTGTGAGTA-AGCATGGAATCATTAGAACACCAAACCAACCAACATAAATTCTG 125002 | ||| || | | || | || ||||||||||||||||||||||||| |||| | | Sbjct 120544 AAGTTGCAGTTAAAAGAGTA-GGGATCATTAGAACACCAAACCAACCAATGTAAAGGCGG 120602 Query 125003 TTGTTTGTTGATGTTACCCACTCACAGAA 125031 || | || || ||||| |||||||| Sbjct 120603 TTTTCAGTGCTAGTAACCCATTCACAGAA 120631 >seq17 Length=88650 Score = 497 bits (550), Expect = 1e-135 Identities = 739/1047 (71%), Gaps = 31/1047 (3%) Strand=Plus/Plus Query 122866 TTAAAGTGCGTTACCTCTTGGTAACACTTCTTCTGGGAATACAAAATTCTCATGCGGTTG 122925 |||||| ||||| || | |||||| || || ||||||||||||| || ||||| || || Sbjct 86611 TTAAAGAGCGTTTCCACGTGGTAAAACCTCCTCTGGGAATACAAGTTTTTCATGTGGCTG 86670 Query 122926 GTCAACAGATGACATCCATGCTCTCATGCCTTCATTAAGAAGAATGTTCTTCGTATAGAA 122985 ||| || | |||||||||||| || ||||| || ||||||||||| || || ||||| Sbjct 86671 GTCCTGAGCCGCCATCCATGCTCTAATACCTTCGTTTAGAAGAATGTTTTTTGTGTAGAA 86730 Query 122986 AGTCTCGAACTCTGGGTCTTCTGCTGCTCTTATCTCTTGAGATACAAAGTCGTATGCTCT 123045 ||||||||| || ||||| || ||||| | |||||||| || |||||||| ||||||| Sbjct 86731 AGTCTCGAATTCAGGGTCCTCAGCTGCACGGATCTCTTGTGAAACAAAGTCATATGCTCG 86790 Query 123046 GAGGTTAAGTGCTAGACCTACGATACCTATAGATGATGTCCACATACCCATGACAGGAAC 123105 | |||||| || || || | | ||| || | |||| | ||| | ||||| || Sbjct 86791 TAAGTTAAGAGCAAGTCCGATAACACCAATTGCACTCATCCAAAGACCAGTTACAGGGAC 86850 Query 123106 GAACAACATAAGGAAGTGTAAGAATCTTTTGTTAGAAAATGCGATACCAAATATCTGTGA 123165 || | ||||| ||| || | | | |||||| || || || | |||||| || ||||| Sbjct 86851 AAAAAGCATAAAGAAATGAAGCCAACGTTTGTTTGAGAAAGCTACACCAAAGATTTGTGA 86910 Query 123166 CCAGAATCTGTTCGCTGTAATCATACTATAAGTTTCTTCTTCCTGTGTAGGATCGAATGC 123225 ||| || | ||| ||||| | |||| || || ||||| | || || || | |||||| Sbjct 86911 CCAAAAACGGTTAGCTGTTACCATAGAGTATGTCTCTTCGGCTTGCGTTGGGTTGAATGC 86970 Query 123226 TCTGAAAGTTGTAGATTGAATCTTACCTTCAGTATATTGTGATGTGTCTTCATACAATGT 123285 | |||||| || || ||| ||| || ||||| | | || Sbjct 86971 ACGGAAAGT-GT--------TCGCACCGTCACCAT------------CTTCAAAAAGAGT 87009 Query 123286 GTTCTGCACTGTTGCACCATGAATGGCACATAGTAATGCTCCACCTAGTATTCCTGCAAC 123345 ||||| |||||||| || ||||| |||||||| | ||| ||||||| | ||||| || Sbjct 87010 GTTCTCTACTGTTGCTCCGTGAATTGCACATAGAAGTGCAGCACCTAGAACACCTGCCAC 87069 Query 123346 ACCCATCATGTGAAATGGATTCAATGTAATGTTGTGGAAACCTTGTATGAATAAGATATA 123405 |||||||||||| || || || | || ||||||||||||||| | ||| | ||| | Sbjct 87070 ACCCATCATGTGGAAAGGGTTAAGCGTCCAGTTGTGGAAACCTTGGAAGAAAAGAATAAA 87129 Query 123406 ACGAAAGATTGCTGCGACACCGAATGATGGTGCGAAGAACCAACTGTGCTGACCTAGTGG 123465 || |||||||| || ||||| || || || |||||||| | || || | || Sbjct 87130 TCGGAAGATTGCCGCTACACCAAAGCTAGGCGCAAAGAACCAGCCTGATTGTCCCAAAGG 87189 Query 123466 ATAGATCAGAAAGA-TGCTAGTGAAGACTGCGATAACAGCAGAGAATGCGAGTGCGTTGT 123524 |||||| || |||| || || |||||| || ||| || ||||| || | ||||||| Sbjct 87190 ATAGATAAGGAAGACTGATA-CGAAGACAGCAATAGGTGCTGAGAAGGCAATAGCGTTGT 87248 Query 123525 AAGGTCTAATGCCTACAAGTCCTGCGATCTCAAATTGTCTGAGCATGAAACCTATGAGTC 123584 |||| | || ||| || ||| | ||||| |||| ||||| || || || || Sbjct 87249 AAGGACGAAGCTTTACCGATCTTGCAAGTTCAAACTGTCGTAGCATAAACCCAATAAGCG 87308 Query 123585 CAAAGACTCCATGTAATGCTACAAAGTTCCATAGACCTCCGAGTTGTAACCAACGAACGA 123644 ||||| | |||||||| ||||| || ||| ||||| || | || |||| ||| | Sbjct 87309 CAAAGGCACCATGTAAAGCTACGAAAGCCCACAGACCACCCAACTGACACCAGCGAGTAA 87368 Query 123645 ATGATCCTTGTGCTTCAGGTCCCCAAAGGAAC----ATGAGACTATGACCCATTGCGTCA 123700 | |||||||| ||||| ||||| |||||| ||||| |||||||| || Sbjct 87369 AGTCACCTTGTGCCTCAGGCCCCCATAGGAACAACAATGAG----TGACCCATGCTGTTT 87424 Query 123701 CCAGGTGTGGAGACTGCTGCTGTTAAGAAGTTTGCTCCCTCAAGATATGAAGATGCAATA 123760 | || || || || ||||||||||||||||| ||| || | || ||| ||||| Sbjct 87425 GCTGGAGTTGAAACGGCTGCTGTTAAGAAGTTGCATCCTTCTAAGTAAGAACTTGCAAGT 87484 Query 123761 CCATGTGTATACCATGATGTAACGAAGGTAGTTCCTAAGAACCAACCACCGATTGATAGA 123820 |||||||| ||||| ||||||||||| || |||||| ||||| ||||| | || || Sbjct 87485 CCATGTGTGTACCAAGATGTAACGAATGTGGTTCCTGTCAACCAGCCACCTAATGCAAGG 87544 Query 123821 TACGCACAAGGCAGAAGTAAAAGACCAGACCATCCTATGAATACAAAACGATCTCTCTTT 123880 || || ||| | ||||| ||||||||||| || | ||| ||||| || || | Sbjct 87545 TAAGCTGTAGGGAAGAGTAACAGACCAGACCAGCCAACGAACACAAATCGTTCACGGCGC 87604 Query 123881 AACCAGTCGTCAAGAACATCAAACCAA 123907 |||||||| || | ||||||||||| Sbjct 87605 AACCAGTCATCTACTTCATCAAACCAA 87631 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 578997632827120