Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Coccomyxa_20sp._20LA000219_20[genbank_20GCA_5F000812005.1_202015-01- 02] 106 sequences; 48,546,496 total letters Query= NC_020851.1 Length=208007 Score E Sequences producing significant alignments: (Bits) Value seq18 827 0.0 seq17 524 1e-143 >seq18 Length=145863 Score = 827 bits (916), Expect = 0.0 Identities = 778/986 (79%), Gaps = 4/986 (0%) Strand=Plus/Plus Query 26733 AGCAAGATCCAATGGAAAATTATGGGCGTTCCTTTCGTGAATCACCTCTAATCCAAGACC 26792 |||||| || | ||| || || || ||||| |||||||| || || || | ||||| Sbjct 119648 AGCAAGGTCTAGTGGGAAGTTGTGTGCGTTTCTTTCGTGCATTACTTCCATACCAAGGTT 119707 Query 26793 AGCACGGTTGAGAACGTCTGCCCAAGTGTTGAGCACACGACCCTGTGAATCAATCACAGA 26852 |||||||||| | ||| |||||||||||| || ||||| || || || | || || Sbjct 119708 GGCACGGTTGATGATGTCACCCCAAGTGTTGATAACGCGACCTTGAGAGTCTACAACTGA 119767 Query 26853 CTGATTGAAGTTGAAACCGTTGAGATTGAAAGCCATCGTGGATACACCAAGTGCGGTGAA 26912 ||| ||||||||||| ||||| || ||||| ||||| || || | |||||| || || || Sbjct 119768 CTGGTTGAAGTTGAATCCGTTAAGGTTGAATGCCATAGTAGAGATACCAAGAGCAGTAAA 119827 Query 26913 CCAGATGCCAACAACGGGCCATGCAGCAAGGAAGAAGTGCAAGGAACGTGAGTTGTTGAA 26972 |||||| ||||| || ||||| ||||||||||||||||| | ||||| ||||||||||| Sbjct 119828 CCAGATACCAACTACAGGCCAAGCAGCAAGGAAGAAGTGAAGTGAACGAGAGTTGTTGAA 119887 Query 26973 TGAAGCATATTGGAAGATCAAACGACCGAAGTAGCCATGTGCTGCGACGATGTTGTAGGT 27032 |||||| ||||||||||| | |||||| ||||| || ||||| || || |||||||| || Sbjct 119888 TGAAGCGTATTGGAAGATTAGACGACCAAAGTAACCGTGTGCAGCAACAATGTTGTAAGT 119947 Query 27033 CTCTTCTTCTTGACCGAACTTATAACCATAGTTCTGTGACTCAGTTTCAGTCGTCTCACG 27092 ||||||||||||||||| || |||||| ||| ||| || | ||||| || ||||| Sbjct 119948 TTCTTCTTCTTGACCGAATTTGTAACCAGCGTTTGCTGATTCGTTCTCAGTAGTTTCACG 120007 Query 27093 GACGAGTGAAGATGTAACCAGACTTCCGTGCATAGCAGAGAAAAGAGATCCACCGAATAC 27152 || |||||||| || || ||| ||||||||||| |||||||| || |||||||| || Sbjct 120008 GATAAGTGAAGAAGTTACTAGAGAACCGTGCATAGCTGAGAAAAGTGAACCACCGAACAC 120067 Query 27153 CCCAGCAACACCGAGCATGTGGAACGGGTGCATAAGGATATTGTGTTCTGCCTGGAATAC 27212 ||||||||||| ||||||||||| |||||||||||||| ||||| || || ||||| || Sbjct 120068 ACCAGCAACACCAAGCATGTGGAATGGGTGCATAAGGATGTTGTGCTCAGCTTGGAAAAC 120127 Query 27213 AAGCATGTAGTTAAAAGTACCAGAGATACCAAGAGGCATAGCATCGGAGAAAGAACCTTG 27272 || |||| |||| ||||| || || ||||| | ||||||| |||| ||||| |||||||| Sbjct 120128 AATCATGAAGTTGAAAGTTCCTGAAATACCCAAAGGCATACCATCTGAGAATGAACCTTG 120187 Query 27273 ACCGAAAGGATAGACGAGGAATACTGCACTCGCAGCAGCGACTGGAGCAGAATATGCTAC 27332 ||||| ||| |||| || |||||| ||| | ||||| || ||||| ||||| || ||||| Sbjct 120188 ACCGATAGGGTAGATGATGAATACAGCAGTAGCAGCTGCAACTGGTGCAGAGTAAGCTAC 120247 Query 27333 ACAGATCCATGGACGCATACCTAAACGATATGAGAGTTCCCACTCACGTCCCATATAAGC 27392 | ||||||||||||||| |||||||| | || |||||||||||||| ||||| | ||| Sbjct 120248 AGCGATCCATGGACGCATTCCTAAACGGAAAGAAAGTTCCCACTCACGACCCATGT-AGC 120306 Query 27393 A-TAGATGCCGATAAGGAAGTGGAAGACTACCAGTTGGAAAGGACCACCGTTATACAACC 27451 | | ||||| | | |||||| | || | |||||| ||||||||||||| || | || Sbjct 120307 AGCAAATGCCTAGGAAGAAGTGACATACGATTAGTTGGTAAGGACCACCGTTGTAAAGCC 120366 Query 27452 ACTCATCGAGTGATGCTGCTTCCCAGATTGGGTAGAAGTGGAGACCGATTGCATTTGAAC 27511 | || || ||||| || |||||||| |||||||||||||| ||||| ||||| ||||| Sbjct 120367 ATTCGTCAAGTGAAGCAGCTTCCCAAATTGGGTAGAAGTGCAGACCAATTGCGTTTGATG 120426 Query 27512 TTGGGACAACTGCACCAGAAATGATGTTGTTGCCATACATAAGTGAACCAGCAACGGGTT 27571 | || ||||| |||||||||||||||||||| || || | || ||||| | || || | Sbjct 120427 TAGGAACAACAGCACCAGAAATGATGTTGTTACCGTAAAGTAGAGAACCTGATACAGGCT 120486 Query 27572 CACGAATACCGTCAATATCGACGGGTGGTGCTGCGATGAATGCGACAATGAA-GCAGACA 27630 |||| ||||| || || || || || ||||| || | ||||||| |||||| |||| | Sbjct 120487 CACGGATACCATCGATGTCTACAGGAGGTGCAGCAACAAATGCGATAATGAACACAGA-A 120545 Query 27631 GTTGCTGCTAACAGTGTTGGGATCATCAGTACACCGAACCAACCAACATACAAACGGTTG 27690 ||||| | ||| || || |||||||| || ||||| |||||||||| || | ||||| Sbjct 120546 GTTGCAGTTAAAAGAGTAGGGATCATTAGAACACCAAACCAACCAATGTAAAGGCGGTTT 120605 Query 27691 TTAGTTGATGTCACCCACTCACAGAA 27716 | ||| || ||||| |||||||| Sbjct 120606 TCAGTGCTAGTAACCCATTCACAGAA 120631 >seq17 Length=88650 Score = 524 bits (580), Expect = 1e-143 Identities = 692/952 (73%), Gaps = 16/952 (2%) Strand=Plus/Plus Query 23433 TTTTCGTGTGGTTGGTCAATAGTCATCATCCATTCACGGAGGCCATTGTTCAACAAAATA 23492 ||||| ||||| ||||| || | ||||||| | | | || | ||| | | ||| Sbjct 86657 TTTTCATGTGGCTGGTCCTGAGCCGCCATCCATGCTCTAATACCTTCGTTTAGAAGAATG 86716 Query 23493 TTTTTCGTGTAGAAGGTCTCATACGAACCATCTTCAGCAGCACGAATCTCTTGACTCACA 23552 ||||| |||||||| ||||| | | || ||||| ||||| |||||||| ||| Sbjct 86717 TTTTTTGTGTAGAAAGTCTCGAATTCAGGGTCCTCAGCTGCACGGATCTCTTGTGAAACA 86776 Query 23553 AAATCATAAGCACGAAGATTAAGAGCAAGCCCAATGATGCCAATAGAAGAGACCCAAAGA 23612 || ||||| || || | ||||||||||| || || | ||||| | | | ||||||| Sbjct 86777 AAGTCATATGCTCGTAAGTTAAGAGCAAGTCCGATAACACCAATTGCACTCATCCAAAGA 86836 Query 23613 CCCATGACAGGAACAAACAACATAAAGAAGTGCAACCAACGCTTATTGCTAAACGCAACC 23672 || | ||||| ||||| | ||||||||| || | |||||| || || || || || Sbjct 86837 CCAGTTACAGGGACAAAAAGCATAAAGAAATGAAGCCAACGTTTGTTTGAGAAAGCTACA 86896 Query 23673 CCGAAGATTTGTGACCAAAAACGATTTGCTGTAACCATCGAATAGGTCTCCTCCTCCTGA 23732 || |||||||||||||||||||| || ||||| ||||| || || ||||| || | || Sbjct 86897 CCAAAGATTTGTGACCAAAAACGGTTAGCTGTTACCATAGAGTATGTCTCTTCGGCTTGC 86956 Query 23733 GTGGAATCGAACGCTTTAAAAGTGTTTGCCTGTTCTCCATCTTCATACAGTGTATTCTCG 23792 || | | ||| || |||||||| || || ||||||||| | || || ||||| Sbjct 86957 GTTGGGTTGAATGCACGGAAAGTGTTCGCACCGTCACCATCTTCAAAAAGAGTGTTCTCT 87016 Query 23793 ACAGTAACTCCATGAATAGCAGAGAGAAGTGCTCCTCCCAGTATACCAGCAACTCCCATC 23852 || || |||| ||||| ||| | |||||||| | || || | ||| || || |||||| Sbjct 87017 ACTGTTGCTCCGTGAATTGCACATAGAAGTGCAGCACCTAGAACACCTGCCACACCCATC 87076 Query 23853 ATATGGAAGGGGTTGAGCGTCCAGTTATGAAAGCCCTGGAGGAAGAGAAGGAACCTGAAA 23912 || ||||| ||||| ||||||||||| || || || |||| ||| |||| || | ||| Sbjct 87077 ATGTGGAAAGGGTTAAGCGTCCAGTTGTGGAAACCTTGGAAGAAAAGAATAAATCGGAAG 87136 Query 23913 ATCGCCGCAACACCGAAACTCGGCGCAAAGAACCAAGATGACTGTCCCAAAGGATAGATG 23972 || ||||| ||||| || || |||||||||||||| ||| ||||||||||||||||| Sbjct 87137 ATTGCCGCTACACCAAAGCTAGGCGCAAAGAACCAGCCTGATTGTCCCAAAGGATAGATA 87196 Query 23973 AGGAATACAGACACGAATACAGCAATAGGACCAGAAAAAGCAATCGCATTGTAGGGACGG 24032 ||||| || || ||||| ||||||||||| | || || ||||| || ||||| ||||| Sbjct 87197 AGGAAGACTGATACGAAGACAGCAATAGGTGCTGAGAAGGCAATAGCGTTGTAAGGACGA 87256 Query 24033 A----TTCCAATTAGACGTGCCAGTTCAAACTGACGTAACATAAAACCTATAAGTGCAAA 24088 | | || || | ||| ||||||||||| |||| |||||| || ||||| ||||| Sbjct 87257 AGCTTTACCGAT----CTTGCAAGTTCAAACTGTCGTAGCATAAACCCAATAAGCGCAAA 87312 Query 24089 GGCACCGTGGAGAGCAACAAAGGACCAAAGCCCTCCAAGTTGGAGCCACCGTTGAAAGTC 24148 |||||| || | ||| || || | ||| || || || | || ||| || |||||| Sbjct 87313 GGCACCATGTAAAGCTACGAAAGCCCACAGACCACCCAACTGACACCAGCGAGTAAAGTC 87372 Query 24149 CCCTTGAGACTCAGGACCCCAAAGTAGAAGAAGA--GAATGACCCATAGCGTCAGCAGGC 24206 ||||| | |||||| ||||| || ||| || | || |||||||| || || || Sbjct 87373 ACCTTGTGCCTCAGGCCCCCATAG--GAACAACAATGAGTGACCCATGCTGTTTGCTGGA 87430 Query 24207 GTCGAGACAGCTGCCGTAAGAAAGTTAGCA-CCCTCAAGATAGGAACTAGCAAGTCCATG 24265 || || || ||||| || | ||||| ||| || || | || ||||| ||||||||||| Sbjct 87431 GTTGAAACGGCTGCTGTTAAGAAGTT-GCATCCTTCTAAGTAAGAACTTGCAAGTCCATG 87489 Query 24266 GGTGTACCAACTCGTAACAAAAGCTGTGCCAGTAAGCCAACCGCCAATGGCAAGATAAGC 24325 ||||||||| ||||| || | || || || | ||| || || | ||||| ||||| Sbjct 87490 TGTGTACCAAGATGTAACGAATGTGGTTCCTGTCAACCAGCCACCTAATGCAAGGTAAGC 87549 Query 24326 AGT-GGGAAGAAGTAGGAGTCCAGACCAACCCACAAAGACAAAGCGATCCCG 24376 || |||||| |||| || |||||||| || || || ||||| || || || Sbjct 87550 TGTAGGGAAG-AGTAACAGACCAGACCAGCCAACGAACACAAATCGTTCACG 87600 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 665493518219920