Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Coccomyxa_20sp._20LA000219_20[genbank_20GCA_5F000812005.1_202015-01- 02] 106 sequences; 48,546,496 total letters Query= NC_020855.1 Length=192497 Score E Sequences producing significant alignments: (Bits) Value seq18 637 6e-178 >seq18 Length=145863 Score = 637 bits (706), Expect = 6e-178 Identities = 735/987 (74%), Gaps = 2/987 (0%) Strand=Plus/Plus Query 7888 GATGCTAAGTCTAATGGGAAGTTGTGTGCATTTCTTTCATGCATAACTTCCATACCTAAG 7947 || || | ||||| ||||||||||||||| |||||||| ||||| ||||||||||| | | Sbjct 119646 GAAGCAAGGTCTAGTGGGAAGTTGTGTGCGTTTCTTTCGTGCATTACTTCCATACCAAGG 119705 Query 7948 TTTGCTCTGTTTAATACGTCACCCCATGTAGGAATGATTTTACCATTAACATCAACAACT 8007 || || | ||| | | ||||||||| || || | ||| | | || |||||| Sbjct 119706 TTGGCACGGTTGATGATGTCACCCCAAGTGTTGATAACGCGACCTTGAGAGTCTACAACT 119765 Query 8008 GATTGGTTAAAGTTAAATCCGTTAAGGTTAAATGCCATTGTGCAAATACCCATAGAAGTT 8067 || ||||| ||||| |||||||||||||| |||||||| || | ||||| | || ||| Sbjct 119766 GACTGGTTGAAGTTGAATCCGTTAAGGTTGAATGCCATAGTAGAGATACCAAGAGCAGTA 119825 Query 8068 AACCAAACACATACAACTGGGAATGTAGCGAGGAAGAAGTGAAGACTTCTACTGTTGTTA 8127 ||||| | || || || || | | ||| |||||||||||||| | | |||||| Sbjct 119826 AACCAGATACCAACTACAGGCCAAGCAGCAAGGAAGAAGTGAAGTGAACGAGAGTTGTTG 119885 Query 8128 AACGATGCATACTGGAAGATTAATCTACCAAAGTATCCATGAGCAGCAACAATATTATAG 8187 || || || || |||||||||| | ||||||||| || || ||||||||||| || || Sbjct 119886 AATGAAGCGTATTGGAAGATTAGACGACCAAAGTAACCGTGTGCAGCAACAATGTTGTAA 119945 Query 8188 GTCTCTTCTTCTTGACCAAACTTATAACCATAGTTCTGAGACTCTTCTTCAGTTGTCTCT 8247 || |||||||||||||| || || |||||| ||| || || | ||||| || || Sbjct 119946 GTTTCTTCTTCTTGACCGAATTTGTAACCAGCGTTTGCTGATTCGTTCTCAGTAGTTTCA 120005 Query 8248 CTGATTAGAGAAGATGTAACTAAAGAACCGTGCATAGCACTGAAGAGTGATCCACCGAAC 8307 | ||| || ||||| || |||| ||||||||||||||| ||| ||||| ||||||||| Sbjct 120006 CGGATAAGTGAAGAAGTTACTAGAGAACCGTGCATAGCTGAGAAAAGTGAACCACCGAAC 120065 Query 8308 ATACCTGCTACCCCTGCCATATGGAAAGGATGCATAAGAATGTTATGCTCTGCTTGGAAT 8367 | ||| || || || ||| ||||| || |||||||| ||||| ||||| |||||||| Sbjct 120066 ACACCAGCAACACCAAGCATGTGGAATGGGTGCATAAGGATGTTGTGCTCAGCTTGGAAA 120125 Query 8368 ACGAACATGAAGTTAAACGTACCAGAAATACCTAGAGGCATTCCATCAGAGAATGAACCC 8427 || | ||||||||| || || || |||||||| | |||||| ||||| ||||||||||| Sbjct 120126 ACAATCATGAAGTTGAAAGTTCCTGAAATACCCAAAGGCATACCATCTGAGAATGAACCT 120185 Query 8428 TGACCAAATGGATATACTAAGAACACTGCGAAAGCAGCAGATACTGGAGCACTATATGCT 8487 ||||| | || || | | ||| || || |||||| | ||||| ||| || ||| Sbjct 120186 TGACCGATAGGGTAGATGATGAATACAGCAGTAGCAGCTGCAACTGGTGCAGAGTAAGCT 120245 Query 8488 ACACAGATCCATGGTCTCATACCTAAGCGGTATGATAACTCCCACTGTCTACCCATGTAA 8547 ||| ||||||||| | ||| ||||| ||| | || | ||||||| | |||||||| | Sbjct 120246 ACAGCGATCCATGGACGCATTCCTAAACGGAAAGAAAGTTCCCACTCACGACCCATGT-A 120304 Query 8548 GCAG-AAATTCCAATAAGGAAGTGGAAGATAACCAACTGATATGGACCTCCGTTATACAA 8606 |||| |||| || | | |||||| | | | | || || ||||| ||||| || | Sbjct 120305 GCAGCAAATGCCTAGGAAGAAGTGACATACGATTAGTTGGTAAGGACCACCGTTGTAAAG 120364 Query 8607 CCACTCATCTAATGTGGCAGCTTCCCAAATGGGATAGAAGTGTAATCCAATAGCGTTGGA 8666 ||| || || | || |||||||||||||| || |||||||| | ||||| ||||| || Sbjct 120365 CCATTCGTCAAGTGAAGCAGCTTCCCAAATTGGGTAGAAGTGCAGACCAATTGCGTTTGA 120424 Query 8667 AGATGGAACGACAGCACCAGAGATGATGTTGTTTCCATACATGAATGAACCTGCAACAGG 8726 | ||||| ||||||||||| ||||||||||| || || | | ||||||| ||||| Sbjct 120425 TGTAGGAACAACAGCACCAGAAATGATGTTGTTACCGTAAAGTAGAGAACCTGATACAGG 120484 Query 8727 TTCACGAATACCGTCGATATCGACAGGTGGAGCAGCAATAAATGCCACGATAAAGCAAGT 8786 ||||| ||||| ||||| || ||||| || ||||||| |||||| | || || || Sbjct 120485 CTCACGGATACCATCGATGTCTACAGGAGGTGCAGCAACAAATGCGATAATGAACACAGA 120544 Query 8787 AGCAGCAGCTAACAAGCAAGGAATCATTAGAACTCCAAACCAACCGACATAAAGTCTGTT 8846 || |||| ||| | ||| ||||||||||| ||||||||||| | ||||| | ||| Sbjct 120545 AGTTGCAGTTAAAAGAGTAGGGATCATTAGAACACCAAACCAACCAATGTAAAGGCGGTT 120604 Query 8847 GTTTGTACTTGTAACCCACTCGCAAAA 8873 | || || |||||||| || || || Sbjct 120605 TTCAGTGCTAGTAACCCATTCACAGAA 120631 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 615861583982320