Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Coccomyxa_20sp._20LA000219_20[genbank_20GCA_5F000812005.1_202015-01- 02] 106 sequences; 48,546,496 total letters Query= NC_020859.1 Length=175430 Score E Sequences producing significant alignments: (Bits) Value seq18 805 0.0 seq17 580 1e-160 >seq18 Length=145863 Score = 805 bits (892), Expect = 0.0 Identities = 774/988 (78%), Gaps = 6/988 (1%) Strand=Plus/Minus Query 165768 CTTCTGCGAATGGGTTACCAGCACAAATAACCGTCTGTATGTCGGTTGGTTTGGTACGCT 165827 |||||| ||||||||||| ||||| | ||||| || || | |||||||||||| || Sbjct 120632 CTTCTGTGAATGGGTTACTAGCACTGAAAACCGCCTTTACATTGGTTGGTTTGGTGTTCT 120573 Query 165828 GATGATTCCAACTCTGTTGGCAGCAACTATCTGC-TTCATCGTCGCCTTCATCGCTGCTC 165886 ||||| || ||||| || | |||||| |||| ||||| |||| || | ||||| | Sbjct 120572 AATGATCCCTACTCTTTTAACTGCAACT-TCTGTGTTCATTATCGCATTTGTTGCTGCAC 120514 Query 165887 CCCCTGTGGACATCGACGGCATCCGTGAACCCGTCGCTGGTTCTCTGATGTATGGTAACA 165946 | ||||| |||||||| || |||||||| || || | |||||||| | || ||||||| Sbjct 120513 CTCCTGTAGACATCGATGGTATCCGTGAGCCTGTATCAGGTTCTCTACTTTACGGTAACA 120454 Query 165947 ACATCATCTCTGGTGCAGTTGTTCCCTCTTCCAACGCAATTGGTCTACACTTCTATCCCA 166006 ||||||| |||||||| |||||||| | || |||||||||||||| |||||||| || | Sbjct 120453 ACATCATTTCTGGTGCTGTTGTTCCTACATCAAACGCAATTGGTCTGCACTTCTACCCAA 120394 Query 166007 TCTGGGAAGCCGCATCGCTTGACGAATGGCTCTATAACGGTGGTCCTTTCCAACTGGTTG 166066 | |||||||| || || |||||||||||||| || ||||||||||||| |||||| | | Sbjct 120393 TTTGGGAAGCTGCTTCACTTGACGAATGGCTTTACAACGGTGGTCCTTACCAACTAATCG 120334 Query 166067 TCTTCCACTTCCTGATTGGCATCTATGCCTACATGGGTCGTGAGTGGGAACTGTCTTACC 166126 | | |||||| | | ||||| | |||||||||||||||||||||||| |||| || Sbjct 120333 TATGTCACTTCTTCCTAGGCATTTGCTGCTACATGGGTCGTGAGTGGGAACTTTCTTTCC 120274 Query 166127 GTCTAGGTATGCGTCCATGGATCTGTGTTGCTTACTCAGCACCAGTCGCTGCTGCGAGTG 166186 || |||| ||||||||||||||| ||| |||||||| |||||||| || ||||| | || Sbjct 120273 GTTTAGGAATGCGTCCATGGATCGCTGTAGCTTACTCTGCACCAGTTGCAGCTGCTACTG 120214 Query 166187 CAGTATTCCTAGTATATCCTTTCGGTCAAGGTAGTTTCTCTGATGCAATGCCACTCGGAA 166246 | |||||| | | || ||| ||||||||||| ||||| |||| ||||| | || | Sbjct 120213 CTGTATTCATCATCTACCCTATCGGTCAAGGTTCATTCTCAGATGGTATGCCTTTGGGTA 120154 Query 166247 TCTCAGGAACATTCAACTACATGTTGGTCTTCCAAGCTGAGCACAATATTCTCATGCATC 166306 | |||||||| ||||||| |||| | || ||||||||||||||||| || || ||||| | Sbjct 120153 TTTCAGGAACTTTCAACTTCATGATTGTTTTCCAAGCTGAGCACAACATCCTTATGCACC 120094 Query 166307 CCTTCCATATGCTCGGCGTTGCTGGGGTATTTGGTGG--CAGTTTGTTTAGTGCTATGCA 166364 | ||||| ||||| || |||||||| || || ||||| || ||| | | |||||||| Sbjct 120093 CATTCCACATGCTTGGTGTTGCTGGTGTGTTCGGTGGTTCACTTTTCTCA--GCTATGCA 120036 Query 166365 CGGAAGTTTGGTTACTTCTTCTCTCGTTAGAGAGACGACTGAAACCGAATCCCAAAACTA 166424 ||| | | || |||||||| || | | || || ||||| | |||||| |||| Sbjct 120035 CGGTTCTCTAGTAACTTCTTCACTTATCCGTGAAACTACTGAGAACGAATCAGCAAACGC 119976 Query 166425 CGGTTACAAGTTCGGACAAGAAGAAGAAACATACAACATCGTAGCCGCTCATGGTTACTT 166484 |||||||| ||||| |||||||||||||| |||||||| || || || || |||||||| Sbjct 119975 TGGTTACAAATTCGGTCAAGAAGAAGAAACTTACAACATTGTTGCTGCACACGGTTACTT 119916 Query 166485 CGGTCGTTTGATCTTCCAATACGCTTCATTCAACAACTCCCGCTCCTTGCACTTCTTCCT 166544 |||||| | ||||||||||||||||||||||||||||| || || | ||||||||||| Sbjct 119915 TGGTCGTCTAATCTTCCAATACGCTTCATTCAACAACTCTCGTTCACTTCACTTCTTCCT 119856 Query 166545 TGCTGCATGGCCTGTTGTCGGCATCTGGTTCACCGCCCTTGGCGTCTCCACGATGGCATT 166604 |||||| |||||||| || || |||||||| || || ||||| |||| || |||||||| Sbjct 119855 TGCTGCTTGGCCTGTAGTTGGTATCTGGTTTACTGCTCTTGGTATCTCTACTATGGCATT 119796 Query 166605 CAACCTGAACGGTTTCAACTTCAACCAGTCCATCCTTGATGGTCAGGGTCGTGTGTTGAA 166664 |||||| ||||| ||||||||||||||||| | | || ||| ||||| || | || Sbjct 119795 CAACCTTAACGGATTCAACTTCAACCAGTCAGTTGTAGACTCTCAAGGTCGCGTTATCAA 119736 Query 166665 CACCTGGGCAGATGTTCTTAACCGCGCTGGTCTCGGTATGGAAGTTATGCATGAGCGTAA 166724 ||| |||| || | | ||||| || || ||||||||||| ||||| || | || Sbjct 119735 CACTTGGGGTGACATCATCAACCGTGCCAACCTTGGTATGGAAGTAATGCACGAAAGAAA 119676 Query 166725 CGCACACAACTTCCCCCTCGACCTCGCT 166752 ||||||||||||||| || ||||| ||| Sbjct 119675 CGCACACAACTTCCCACTAGACCTTGCT 119648 >seq17 Length=88650 Score = 580 bits (642), Expect = 1e-160 Identities = 750/1028 (73%), Gaps = 16/1028 (2%) Strand=Plus/Minus Query 167011 TGGTTTGATGTCCTCGATGACTGGCTTAAAAGGGATCGTTTTGTTTTTGTTGGCTGGTCT 167070 |||||||||| | ||||||||| | | || || ||||| || |||||||||||| Sbjct 87630 TGGTTTGATGAAGTAGATGACTGGTTGCGCCGTGAACGATTTGTGTTCGTTGGCTGGTCT 87571 Query 167071 GGACTTCTTCTTTTTCCCACTGCTTATCTTGCTATTGGCGGTTGGCTTACTGGGACTACT 167130 || || | || || || || ||||| ||||| | || || ||| | || || || || Sbjct 87570 GGTCTGTTACTCTTCCCTACAGCTTACCTTGCATTAGGTGGCTGGTTGACAGGAACCACA 87511 Query 167131 TTCGTCACGAGTTGGTATACTCATGGACTCGC--GTCCAGTTATCTTGAGGG-TGCGAAC 167187 ||||| || |||||| || |||||||| || || | ||| | || || ||| ||| Sbjct 87510 TTCGTTACATCTTGGTACACACATGGACTTGCAAGTTC--TTACTTAGAAGGATGC-AAC 87454 Query 167188 TTTCTTACTGCGGCAGTTAGTACTCCAGCAGATTCTATGGGTCATTCTTTACTTCTTCTA 167247 || | || || || ||| ||||||||| | |||||||| || || | | ||| Sbjct 87453 TTCTTAACAGCAGCCGTTTCAACTCCAGCAAACAGCATGGGTCACTCATTGTTGTTCCTA 87394 Query 167248 TGGGGTCCTGAATCTCAAGGGGA-TTTCGTCAGGTGGCTCCAACTTGGGGGACTCTGGGC 167306 ||||| ||||| | ||||| || ||| || | ||| || | || || || ||||| Sbjct 87393 TGGGGGCCTGAGGCACAAGGTGACTTTACTC-GCTGGTGTCAGTTGGGTGGTCTGTGGGC 87335 Query 167307 TTTTGTGGCGCTCCACGGAGCCTTTGCTCTCATTGGTTTCATGCTTCGACAGTTTGAACT 167366 ||| || || | || || |||||||| || ||||| || ||||| |||||||||||||| Sbjct 87334 TTTCGTAGCTTTACATGGTGCCTTTGCGCTTATTGGGTTTATGCTACGACAGTTTGAACT 87275 Query 167367 TGCTCGCCTGATTGGTA----TCCGTCCCTACAATGCTATTGCTTTCTCTGGTCCTATTG 167422 ||| | || |||| | ||||| ||||| |||||||| ||||| | ||||||| Sbjct 87274 TGCAAG----ATCGGTAAAGCTTCGTCCTTACAACGCTATTGCCTTCTCAGCACCTATTG 87219 Query 167423 CTGTCTTCGTTAGCGTTTTCCTTCTCTATCCCCTCGGTCAAAGCAGCTGGTTCTTTGCCC 167482 |||||||||| || |||||| ||||||| | || ||| ||||||||||||| | Sbjct 87218 CTGTCTTCGTATCAGTCTTCCTTATCTATCCTTTGGGACAATCAGGCTGGTTCTTTGCGC 87159 Query 167483 CGTCCTTCGGAGTCGCCGCCATCTTCCGATTCCTCCTCTTCCTCCAAGGATTCCACAACT 167542 | ||| || || || || ||||||||||| | || ||| ||||||| |||||||||| Sbjct 87158 CTAGCTTTGGTGTAGCGGCAATCTTCCGATTTATTCTTTTCTTCCAAGGTTTCCACAACT 87099 Query 167543 GGACACTGAATCCATTTCATATGATGGGTGTAGCAGGTATCCTGGGTGGTGCATTGCTTT 167602 |||| || || || || || ||||||||||| |||||| | || |||| |||| | || | Sbjct 87098 GGACGCTTAACCCTTTCCACATGATGGGTGTGGCAGGTGTTCTAGGTGCTGCACTTCTAT 87039 Query 167603 CTGCAATCCATGGTGTTACAGTAGAGAATACTTTGTATGAAGATGGTGAGCAAGCAAACA 167662 |||||| || || | ||||||||||| ||| | | |||||||||||| || |||| Sbjct 87038 GTGCAATTCACGGAGCAACAGTAGAGAACACTCTTTTTGAAGATGGTGACGGTGCGAACA 86979 Query 167663 CTTTTAAGGCATTCGATTCTACTCAGGAAGAAGAGACTTATTCAATGGTTACAGCAAACC 167722 |||| |||||| | | || || | |||||||| || || ||||| ||||| |||| Sbjct 86978 CTTTCCGTGCATTCAACCCAACGCAAGCCGAAGAGACATACTCTATGGTAACAGCTAACC 86919 Query 167723 GATTCTGGTCTCAGATCTTCGGCATTGCTTTCAGCAACAAACGCTGGCTTCATTTCTTTA 167782 | || ||||| || ||||| || | |||||| |||||||| |||||||||||||||| Sbjct 86918 GTTTTTGGTCACAAATCTTTGGTGTAGCTTTCTCAAACAAACGTTGGCTTCATTTCTTTA 86859 Query 167783 TGTTATTCGTTCCCGTTATGGGACTTTGGACATCATCGATTGGCATCATTGGTCTGGCTC 167842 || | || || || || | || ||||||| | ||||| | || || || |||| Sbjct 86858 TGCTTTTTGTCCCTGTAACTGGTCTTTGGATGAGTGCAATTGGTGTTATCGGACTTGCTC 86799 Query 167843 TTAATCTTCGTGCTTACGATTTCGTTTCTCAAGAGATCAGAGCGGCGGAGGATCCAGAGT 167902 |||| | || || || || || ||||| ||||||||| | || || ||||| || || | Sbjct 86798 TTAACTTACGAGCATATGACTTTGTTTCACAAGAGATCCGTGCAGCTGAGGACCCTGAAT 86739 Query 167903 TTGAAACTTTCTATACTAAAAACATCCTTCTGAATGAAGGTCTTCGAGCATGGTTAGCAC 167962 | || |||||||| || |||||||| ||||| || |||||| || |||||||| | || Sbjct 86738 TCGAGACTTTCTACACAAAAAACATTCTTCTAAACGAAGGTATTAGAGCATGGATGGCGG 86679 Query 167963 CTATCGATCAACCTCATGAGAACTTTGTGTTCCCAGAGGAAGTTCTCCCACGAGGCAACG 168022 || || || || ||||| || |||| ||||||||||| ||| | ||||| || |||| Sbjct 86678 CTCAGGACCAGCCACATGAAAAACTTGTATTCCCAGAGGAGGTTTTACCACGTGGAAACG 86619 Query 168023 CACTATAA 168030 | || ||| Sbjct 86618 CTCTTTAA 86611 Score = 89.7 bits (98), Expect = 6e-13 Identities = 66/77 (86%), Gaps = 0/77 (0%) Strand=Plus/Plus Query 18129 TCCTCAGTAGCTCAGCGGCAGAGCCATCGACTGTTAATCGATTGGTCGTAGGTTCAAATC 18188 |||| |||||||||| || ||||| | || ||||||| || |||||||||||||||| || Sbjct 47897 TCCTTAGTAGCTCAGTGGTAGAGCGACCGGCTGTTAACCGGTTGGTCGTAGGTTCAAGTC 47956 Query 18189 CTACCTGGGGAGTTGTT 18205 |||||| ||||||||| Sbjct 47957 CTACCTAAGGAGTTGTT 47973 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 561247256346400